TCONS_00072116 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072116
Unique NameTCONS_00072116
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2458

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072116 ID=TCONS_00072116|Name=TCONS_00072116|organism=Clytia hemisphaerica|type=transcript|length=2458bp
caaaaaacgcGAAAGAGAattcagaaaataaaattttcagatatAAATCA
ACattcaaactaaaaatatttgtaaatgtTTGTAATTCAAATCATAAAAC
GAAGCAAACAAAATATTAACAGTAATTTTAGCAATTTATCGCATTTTTTT
CGAATGCTAACAAGCTTTGGCTAGAAATCAGTTTTGTGAAAGCAACTGGT
GAACAtgcagaaaatgtttgaaagaaTTATATTGTTGCTAGCTTTTGGAC
TCGTTATTACTACTACCGCTTCTTCAACCATGAATAATACGGAAAGCTTG
AGATCAGTCGATGACAATACTTTTGACCGTATTCAAACGATCAAccagaa
gtacggagAAAAAGATGACCTTGTTGAGGCAGACATCAAGATGAatccaa
aaatccaaaaattacTGAGTCAGCAAAATGAGCAAACCAGTGGTGATAAA
CAACAAACTGGATCGaaacgaaagatttttcaataCATGCTTAACCAATG
GCCAAACGCAACTGTACCTTATGTTTTCGCCTCCGCATTCGaatGGCGAA
AAGAAGTGAAACAAGCGATTGGAATAATCGAATCAGTTTCGTGTATCCGA
TTTATACGCAGAACCGATGAGAAGAACTACATCCGATTCGTTCACAGTCT
CGGGTAATTTTTTGTATGAATATACTTTATGAGAATATTAATAATGCAAA
ATTGGCCCAAAAGAGTAACAATATAGTAAGAATAACACCATCATGGTATT
TGGTCACTGAACCTaaaagaatgccattttttagagaatttttaacggta
aattgccaattattccccagcaatgctaaatagttcaacaaaatttttgc
ttgagGTATGATTTACATGCTTGATTTTGACTGGAATTGGATCCAGACCT
AAGAAGACTAACCGTAACAAACCTTTTTAGTCAGCAGAGAAGAGTTTGGT
AAGGCTATATAGAGGCAGAAGTGTCCTATTATAAATGTTTTGAGCTGTTT
GGAAGAGAATGAATTCATAAACATTTCATATATTGGAATTAAAGGTGTTG
GTCATTGGTGGGAAAATTTCGTTATCCGACGCGTCAACATATTTCACTTG
GTCCTGGCTGCAACAACCAAGGCATAATATTACACGAGCTACTACACGCA
CTTGGATTTTTCCATGAAATCTCAAGAGAGGATAGAAATAAATATGTCAA
AATTAACTGGGATAATGTAAAGGGAggaataaaaaatatcaacttttcgA
GATGGAAAATATCGAGCAGTGAatattttggcgggaaatttGATACCCAA
TCGATTATGATGTACGGAAACTATGCCTTTGCGAAAGACTCTAACTACAT
GACAATGATTTCTAAAGAGAGGCCAACAGATCTTCTTGGACAACGCGAGG
GTTTATCACAAAATGACATCGTACAACTAAACAACAAGTATAAATGCGAT
AAAAACTTATGTAGAGACAAATTTGGTATTTGCTCCAAATATAAGCACAT
GTGTAATGATGCAACGTGGTTCGAATTTCGTCCAAACTGTGCTCTAACAT
GCAAAGTGTGCAAGCCGCAAAAAGATACACATACGGATAACTCAACTGAA
GTAAAAGGTACTGACAGTATCATATTGAGTGATTCAAAAGGACCGACCAC
AAACAAAACGACCACCTTTAAAAAGACAACGACCATTCCTACGAATGACG
AAAATATTGACaccgaatttgaaatttcatgGTAACTTGTTTGAGGATTT
GAGGTATATATCCGTCGGCACTACATTCGATTATTTCACTATTCGACATC
TAGTTGACAAGAGCATATTCTAATCAATCTTttagattacacgttttttt
tatttggaaaagTCCTTTAGGAGATATTTTGAGTAGTGTGGAGTGGCACT
CTATGGAATAAAGAAACATAGAAGCTTGTTTTAAAATGACACTGCTGAAT
TTTATTCAAAGCTGTACCTTTCAAAGATCCACTGAGGGCGAGGCTGGACA
ACCCGCCCAGATACCATACATCTATCAGGTCGTCTATAAAGTCTATAACA
CAGGGACAGTGCTAGACTAGCCTGTGGGTTATTTCTTTCATAGCTGGCAG
ACCCATGGGGCCTCTGTTAGACAAGCCCCGGGTACCTTCTAGGAGTGACC
CTAATACTTCCGCTAACACTTATTATATAGCATTCCTTAAATATACTTTA
GAATACATATAATCAGGGTCAAAAGACTCACTCTGTGTCAATCTCTTGTC
TCCCGGCTCAAAGCTACTATGCTTGAAATCAGGACGTTAAAAAAACAATT
ACCTCATCCAGCTCaagactttttttgaaaatgggccAAGGTTCAATCTC
GTTCATTCCACTGAAATTTCGGCaaatggcatttttgatttctgatgtTG
GAGGTTTTCCATCATATTTCTTTGCCAAACAAAATACCAGTTTGATCAGg
ctgaaaaa
Run BLAST on NCBI

transcript from alignment at scaffold_71:542104..547740+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072116 ID=TCONS_00072116|Name=TCONS_00072116|organism=Clytia hemisphaerica|type=transcript|length=5637bp|location=Sequence derived from alignment at scaffold_71:542104..547740+ (Clytia hemisphaerica)
caaaaaacgcGAAAGAGAattcagaaaataaaattttcagatatAAATCA
ACattcaaactaaaaatatttgtaaatgtTTGTAATTCAAATCATAAAAC
GAAGCAAACAAAATATTAACAGTAATTTTAGCAATTTATCGCATTTTTTT
CGAATGCTAACAAGCTTTGGCTAGAAATCAGTTTTGTGAAAGCAACTGGT
GAACAtgcagaaaatgtttgaaagaaTTATATTGTTGCTAGCTTTTGGAC
TCGTTATTACTACTACCGGTAGGTGATAAGCTTTTCACAAATAATttttc
agatgagatggagctTTCATAacatactttaataattggtcatttaaagt
aataaaaatgacgcattctttagaaaaagtaacaaaatcgttttattact
ggttaacgaccaaccaaatcaaataagagcttgtaaaaactccatctcgt
ccctaaTTTTTCAGAACGAATTTAGGGTCATCGCTTTAGACAACGTCCGG
GTCAGATAACGTCCGGGGAATTGAATAAAATGGTCCTGATTGCTACTGCT
TGTCCCCTtgcagtctgttcctctaaagaatcctgcattgtaacacacat
gcgtaatttgtcgttcttttaaaccacatgcagtaaattcccgtgataaa
caaagaggaatgaatcagTAGGGGTGCtacagtcactttcagtcggGTTT
GTGGACGGGGAAATATGtcgtttttaatgaaatttgtcgttctttttgtc
tatttttagtaatgcaggattatTTAGATAAACCCACTCCTTGgttgttt
tttaattgaaaattcaagagtgggaaattcttttttctataagagccagt
aaaattttctataagagccagtaaaattttgctaaggcttcttatttttt
tggcactttgaaccccaaattgttcttatcctgttcttatttatagggtg
tgATTGATGTATTTTAGACGTTATACCTAACCTTTACTACTTTACTACTA
ACCCCTAAATCACTTGAAATTGAGTGATTCCCAGGTTCAgcgttgttctt
aaattgttctcattttatggccattttgagcctcattgttcttataaaat
tcttccaataaaaaaataagtgtaagggatatttttatttttctacagCG
CTGTAAATAAGGGCAACATCACATGCCGTTTTTCTGGGCCTTGAGTAGGG
ACATAgctcatctaacgtttccagttCACCCAAATAGAAACGCAAGCGTA
TTTTATCGTTCTTTAAACCGTTGAACAGCGTAAAATATGAAAAGTAATAA
ATACAAAGGGGTGGTGTCACTTTTAAGGTCGGGGGAGGGGATGGTTAAAT
ATGtcgtcttttgtcttttttttaaatgtaatttGTCGTTTATTTTAGAT
GGCCTGGAAACGTTAGTTGAACAGTCTGTTTTATAACCCCACTGCCCCct
ataaatgtttttaaagctTAAAAACTTCGACTACCTTGTAGCTTCTTCAA
CCATGAATAATACGGAAAGCTTGAGATCAGTCGATGACAATACTTTTGAC
CGTATTCAAACGATCAAccagaagtacggaggtaatgcACATTCAATTTC
AGCTGTAATAGCTTTACAGGGGGACAGGAGGCAAGTGTCCCCTTATTAAC
GTGGAGAGGTgggaattttataagaacatccaaaatttcttaAACCTTTa
aggatgttcttagctttttgagtttgagcctaaaaatgttcttaaaaggT
TCTTAATGTGCagtttttttagtatttttgcccatttacCTAAGAAGTTG
GGTGTTTTagggtctgcaaagccttaaactgTTCTTcagttgttcttaat
attttaaccattatatagtttgtttttatgaagaaaaaaacgtgtGATTC
CTACATGGGAAGTATATTAACAACAGTTTGCGATTCCAACTACAGAAGAT
AACTGGTTGAAGGCCAAAAAgctcatttttttaatgaaaagcccCAAACA
GTTTTTATCAGTCATCCTTTTGACCTCCCAAATTAAACAAATTAGCGAGA
AATAtcagaagaaaattttaaaagcctatctgaaactgaaaatttcaaaa
aatatgaacAATTTGAACCAAGATATATCGGTTGTTATAAAAATCATTTA
GTACTAGGGGTACAATGAATTAATCTATAAAACTTTTTCTTGaccacagt
cggaggcgacccgaaggctcctttttCGATAGTTATCTAACCGAAGgaag
gggagggcgccactctttctcacTGGATTGCTTCACTTCACACCANTCTA
ACCGAAGGAAGGGGAGGACGCCACTCTTTCTcactggattgctccactta
cccttgatccttctcttaattgctgagcatcaagctgataggcatcaagt
accattttaggAATCATGGGTATGACCAAGCTTcggattgaacccacaac
cttgcgcacagTGGCCGGAtcctctaccactgcactacgatCGCTTTCTT
ATTATAAACATTACAGAAAAAGATGACCTTGTTGAGGCAGACATCAAGAT
GAatccaaaaatccaaaaattacTGAGTCAGCAAAATGAGCAAACCAGTG
GTGATAAACAACAAACTGGATCGaaacgaaagatttttcaataCATGCTT
AACCAATGGCCAAACGCAACTGTACCTTATGTTTTCGCCTCCGCATTCGG
TAAGGAAAGCCCTTATTCAAGATTATTTATCTGCAATTTCATCACAAACT
TTTAACGGCTACACGGACGAGTAGAGTTTAGTATTGTTTTAAGCCTACGG
GTGTATTTGACTTTTCTagttttaaggctaaaaatgttcactattttttg
aatgttttttgtgCGATTCCCTAATAAATTGGGTGTTTTTTTTAGTCCgc
gaagccttgaaatgttgttaacttgttcttaataataTCTTGGCCAttaa
agccttatgtttttatgaaaaacctTCACTTTAccataacattttttttt
tacttcagaatGGCGAAAAGAAGTGAAACAAGCGATTGGAATAATCGAAT
CAGTTTCGTGTATCCGATTTATACGCAGAACCGATGAGAAGAACTACATC
CGATTCGTTCACAGTCTCGGGTAATTTTTTGTATGAATATACTTTATGAG
AATATTAATAATGCAAAATTGGCCCAAAAGAGTAACAATATAGTAAGAAT
AACACCATCATGGTATTTGGTCACTGAACCTaaaagaatgccatttttta
gagaatttttaacggtaaattgccaattattccccagcaatgctaaatag
ttcaacaaaatttttgcttgagGTATGATTTACATGCTTGATTTTGACTG
GAATTGGATCCAGACCTAAGAAGACTAACCGTAACAAACCTTTTTAGTCA
GCAGAGAAGAGTTTGGTAAGGCTATATAGAGGCAGAAGTGTCCTATTATA
AATGTTTTGAGCTGTTTGGAAGAGAATGAATTCATAAACATTTCATATAT
TGGAATTAAAGGTGTTGGTCATTGGTGGGAAAATTTCGTTATCCGACGCG
TCAACATATTTCACTTGGTCCTGGCTGCAACAACCAAGGCATAATATTAC
ACGAGCTACTACACGCACTTGGATTTTTCCATGAAATCTCAAGAGAGGAT
AGAAATAAATATGTCAAAATTAACTGGGATAATGTAAAGGGTGAGCGCTT
AACTGTGTGTATTATATTCTTTCTGAGAAAGGATTGTTGCTAGAGATAAG
GTTGGATAAGACCCTAATGGCAGTTTCTATTATATTTGGTGAGTACGTCA
ACTTGGGATATGTAAAGAAGAGCTGAAGGTCGATTTTGGACGTAATAATT
GTGGCCCAAATTTAGCATATATTCTATCAATAGATTGAACGTTGTTAACA
TTCTTGAAAATTATGGTCAAATTATGGTCAAAGATAATTTTGTGTAGCCA
ATTTTGACCCTCAGCTTGCGGAGAAAGGAAAGTATCATTAGATTTTCAAC
ACTAGCAGCCAGTCATCCAAAACAGACGCTAACAAAGTACTTTTTCACTT
TCTAGGAggaataaaaaatatcaacttttcgAGATGGAAAATATCGAGCA
GTGAatattttggcgggaaatttGATACCCAATCGATTATGATGTACGGA
AAGTAAGTTCAAAACTGCTTCTCTTTGTTTGACccaaaagaaaataaaca
aattgaATTCTGGTCAAGACATACAAAATTCTCGGGAGATCTCTTGAAGG
GTTAGGTGGTAACACCAATCACGATTCTGGtttattttcaaaaggtttAT
AGACGCCCACCTCGGGCCTGTGAGCTTGTATACTTTATAATAACGACCAT
CAAGGCTCTTAGACGTGATTTTTGTCATGGTCCAAGTATTGGAGCCATTT
ATAGAAAGAATATGCTCGACGGgacttttgaaagtttaaagtttGATAGT
GTTAGTGTTAATGAAATAAATATTGATTCTTCTCTGCTTGATATTTCAGC
TATGCCTTTGCGAAAGACTCTAACTACATGACAATGATTTCTAAAGAGAG
GCCAACAGATCTTCTTGGACAACGCGAGGGTTTATCACAAAATGACATCG
TACAACTAAACAACAAGTATAAATGCGATAAAAACTTATGTAGAGACAAA
TTTGGTATTTGCTCCAAATATAAGCACATGTGTAATGATGCAACGTGGTT
CGAATTTCGTCCAAACTGTGCTCTAACATGCAAAGTGTGCAAGCCGCAAA
AAGATACACATACGGATAACTCAACTGAAGTAAAAGGTACTGACAGTATC
ATATTGAGTGATTCAAAAGGACCGACCACAAACAAAACGACCACCTTTAA
AAAGACAACGACCATTCCTACGAATGACGAAAATATTGACaccgaatttg
aaatttcatgGTAACTTGTTTGAGGATTTGAGGTATATATCCGTCGGCAC
TACATTCGATTATTTCACTATTCGACATCTAGTTGACAAGAGCATATTCT
AATCAATCTTttagattacacgttttttttatttggaaaagTCCTTTAGG
AGATATTTTGAGTAGTGTGGAGTGGCACTCTATGGAATAAAGAAACATAG
AAGCTTGTTTTAAAATGACACTGCTGAATTTTATTCAAAGCTGTACCTTT
CAAAGATCCACTGAGGGCGAGGCTGGACAACCCGCCCAGATACCATACAT
CTATCAGGTCGTCTATAAAGTCTATAACACAGGGACAGTGCTAGACTAGC
CTGTGGGTTATTTCTTTCATAGCTGGCAGACCCATGGGGCCTCTGTTAGA
CAAGCCCCGGGTACCTTCTAGGAGTGACCCTAATACTTCCGCTAACACTT
ATTATATAGCATTCCTTAAATATACTTTAGAATACATATAATCAGGGTCA
AAAGACTCACTCTGTGTCAATCTCTTGTCTCCCGGCTCAAAGCTACTATG
CTTGAAATCAGGACGTTAAAAAAACAATTACCTCATCCAGCTCaagactt
tttttgaaaatgggccAAGGTTCAATCTCGTTCATTCCACTGAAATTTCG
GCaaatggcatttttgatttctgatgtTGGAGGTTTTCCATCATATTTCT
TTGCCAAACAAAATACCAGTTTGATCAGgctgaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044790XLOC_044790Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072116-exon-scaffold_71-1491911889:542104..542371TCONS_00072116-exon-scaffold_71-1491911889:542104..542371Clytia hemisphaericaexon
TCONS_00072116-exon-scaffold_71-1510915933:542104..542371TCONS_00072116-exon-scaffold_71-1510915933:542104..542371Clytia hemisphaericaexon
TCONS_00072116-exon-scaffold_71-1575043694:542104..542371TCONS_00072116-exon-scaffold_71-1575043694:542104..542371Clytia hemisphaericaexon
TCONS_00072116-exon-scaffold_71-1491911889:543595..543684TCONS_00072116-exon-scaffold_71-1491911889:543595..543684Clytia hemisphaericaexon
TCONS_00072116-exon-scaffold_71-1510915933:543595..543684TCONS_00072116-exon-scaffold_71-1510915933:543595..543684Clytia hemisphaericaexon
TCONS_00072116-exon-scaffold_71-1575043694:543595..543684TCONS_00072116-exon-scaffold_71-1575043694:543595..543684Clytia hemisphaericaexon
TCONS_00072116-exon-scaffold_71-1491911889:544620..544802TCONS_00072116-exon-scaffold_71-1491911889:544620..544802Clytia hemisphaericaexon
TCONS_00072116-exon-scaffold_71-1510915933:544620..544802TCONS_00072116-exon-scaffold_71-1510915933:544620..544802Clytia hemisphaericaexon
TCONS_00072116-exon-scaffold_71-1575043694:544620..544802TCONS_00072116-exon-scaffold_71-1575043694:544620..544802Clytia hemisphaericaexon
TCONS_00072116-exon-scaffold_71-1491911889:545112..545793TCONS_00072116-exon-scaffold_71-1491911889:545112..545793Clytia hemisphaericaexon
TCONS_00072116-exon-scaffold_71-1510915933:545112..545793TCONS_00072116-exon-scaffold_71-1510915933:545112..545793Clytia hemisphaericaexon
TCONS_00072116-exon-scaffold_71-1575043694:545112..545793TCONS_00072116-exon-scaffold_71-1575043694:545112..545793Clytia hemisphaericaexon
TCONS_00072116-exon-scaffold_71-1491911889:546159..546255TCONS_00072116-exon-scaffold_71-1491911889:546159..546255Clytia hemisphaericaexon
TCONS_00072116-exon-scaffold_71-1510915933:546159..546255TCONS_00072116-exon-scaffold_71-1510915933:546159..546255Clytia hemisphaericaexon
TCONS_00072116-exon-scaffold_71-1575043694:546159..546255TCONS_00072116-exon-scaffold_71-1575043694:546159..546255Clytia hemisphaericaexon
TCONS_00072116-exon-scaffold_71-1491911889:546603..547740TCONS_00072116-exon-scaffold_71-1491911889:546603..547740Clytia hemisphaericaexon
TCONS_00072116-exon-scaffold_71-1510915933:546603..547740TCONS_00072116-exon-scaffold_71-1510915933:546603..547740Clytia hemisphaericaexon
TCONS_00072116-exon-scaffold_71-1575043694:546603..547740TCONS_00072116-exon-scaffold_71-1575043694:546603..547740Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:542104..547740 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.165132	0.089166	0.414121	0.765707	0	0	0	0	0	0	0	0	0	0	0	0	0.0629508	0	0	0	0	0.120681	0.182624	0	0	0.157087	0	0	0	0
Blast
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BLAST of TCONS_00072116 vs. Swiss-Prot (Human)
Match: MEP1B (Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 5.895e-20
Identity = 50/138 (36.23%), Postives = 74/138 (53.62%), Query Frame = 2 
Query: 1046 CWSLVGKFRYPTRQHISLGPGCNNQGIILHELLHALGFFHEISREDRNKYVKINWDNVKGGIKNINFSRWKISSSEYFGGKFDTQSIMMYGNYAFAKDSNYMTMISKERPTDLLGQREGLSQNDIVQLNNKYKCDKNL 1459
            CWS VG  R   +Q +S+G  C+    + HE LHALGF+HE SR DR+ YV+I WD +  G +  NF+ +    S+     +D  S+M Y   AF   +    +       D++GQR   S +D+++LN  Y C  +L
Sbjct:  124 CWSSVGN-RRVGKQELSIGANCDRIATVQHEFLHALGFWHEQSRSDRDDYVRIMWDRILSG-REHNFNTYSDDISDSLNVPYDYTSVMHYSKTAFQNGTEPTIVTRISDFEDVIGQRMDFSDSDLLKLNQLYNCSSSL 259
The following BLAST results are available for this feature:
BLAST of TCONS_00072116 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MEP1B5.895e-2036.23Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=... [more]
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