TCONS_00072115 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072115
Unique NameTCONS_00072115
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2070

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072115 ID=TCONS_00072115|Name=TCONS_00072115|organism=Clytia hemisphaerica|type=transcript|length=2070bp
tttcaaaaaacgcGAAAGAGAattcagaaaataaaattttcagatatAAA
TCAACattcaaactaaaaatatttgtaaatgtTTGTAATTCAAATCATAA
AACGAAGCAAACAAAATATTAACAGTAATTTTAGCAATTTATCGCATTTT
TTTCGAATGCTAACAAGCTTTGGCTAGAAATCAGTTTTGTGAAAGCAACT
GGTGAACAtgcagaaaatgtttgaaagaaTTATATTGTTGCTAGCTTTTG
GACTCGTTATTACTACTACCGCTTCTTCAACCATGAATAATACGGAAAGC
TTGAGATCAGTCGATGACAATACTTTTGACCGTATTCAAACGATCAAcca
gaagtacggagAAAAAGATGACCTTGTTGAGGCAGACATCAAGATGAatc
caaaaatccaaaaattacTGAGTCAGCAAAATGAGCAAACCAGTGGTGAT
AAACAACAAACTGGATCGaaacgaaagatttttcaataCATGCTTAACCA
ATGGCCAAACGCAACTGTACCTTATGTTTTCGCCTCCGCATTCGaatGGC
GAAAAGAAGTGAAACAAGCGATTGGAATAATCGAATCAGTTTCGTGTATC
CGATTTATACGCAGAACCGATGAGAAGAACTACATCCGATTCGTTCACAG
TCTCGGGTGTTGGTCATTGGTGGGAAAATTTCGTTATCCGACGCGTCAAC
ATATTTCACTTGGTCCTGGCTGCAACAACCAAGGCATAATATTACACGAG
CTACTACACGCACTTGGATTTTTCCATGAAATCTCAAGAGAGGATAGAAA
TAAATATGTCAAAATTAACTGGGATAATGTAAAGGGAggaataaaaaata
tcaacttttcgAGATGGAAAATATCGAGCAGTGAatattttggcgggaaa
tttGATACCCAATCGATTATGATGTACGGAAACTATGCCTTTGCGAAAGA
CTCTAACTACATGACAATGATTTCTAAAGAGAGGCCAACAGATCTTCTTG
GACAACGCGAGGGTTTATCACAAAATGACATCGTACAACTAAACAACAAG
TATAAATGCGATAAAAACTTATGTAGAGACAAATTTGGTATTTGCTCCAA
ATATAAGCACATGTGTAATGATGCAACGTGGTTCGAATTTCGTCCAAACT
GTGCTCTAACATGCAAAGTGTGCAAGCCGCAAAAAGATACACATACGGAT
AACTCAACTGAAGTAAAAGGTACTGACAGTATCATATTGAGTGATTCAAA
AGGACCGACCACAAACAAAACGACCACCTTTAAAAAGACAACGACCATTC
CTACGAATGACGAAAATATTGACaccgaatttgaaatttcatgGTAACTT
GTTTGAGGATTTGAGGTATATATCCGTCGGCACTACATTCGATTATTTCA
CTATTCGACATCTAGTTGACAAGAGCATATTCTAATCAATCTTttagatt
acacgttttttttatttggaaaagTCCTTTAGGAGATATTTTGAGTAGTG
TGGAGTGGCACTCTATGGAATAAAGAAACATAGAAGCTTGTTTTAAAATG
ACACTGCTGAATTTTATTCAAAGCTGTACCTTTCAAAGATCCACTGAGGG
CGAGGCTGGACAACCCGCCCAGATACCATACATCTATCAGGTCGTCTATA
AAGTCTATAACACAGGGACAGTGCTAGACTAGCCTGTGGGTTATTTCTTT
CATAGCTGGCAGACCCATGGGGCCTCTGTTAGACAAGCCCCGGGTACCTT
CTAGGAGTGACCCTAATACTTCCGCTAACACTTATTATATAGCATTCCTT
AAATATACTTTAGAATACATATAATCAGGGTCAAAAGACTCACTCTGTGT
CAATCTCTTGTCTCCCGGCTCAAAGCTACTATGCTTGAAATCAGGACGTT
AAAAAAACAATTACCTCATCCAGCTCaagactttttttgaaaatgggccA
AGGTTCAATCTCGTTCATTCCACTGAAATTTCGGCaaatggcatttttga
tttctgatgtTGGAGGTTTTCCATCATATTTCTTTGCCAAACAAAATACC
AGTTTGATCAGgctgaaaaa
Run BLAST on NCBI

protein sequence of TCONS_00072115-protein

>TCONS_00072115-protein ID=TCONS_00072115-protein|Name=TCONS_00072115-protein|organism=Clytia hemisphaerica|type=polypeptide|length=379bp
MQKMFERIILLLAFGLVITTTASSTMNNTESLRSVDDNTFDRIQTINQKY
GEKDDLVEADIKMNPKIQKLLSQQNEQTSGDKQQTGSKRKIFQYMLNQWP
NATVPYVFASAFEWRKEVKQAIGIIESVSCIRFIRRTDEKNYIRFVHSLG
CWSLVGKFRYPTRQHISLGPGCNNQGIILHELLHALGFFHEISREDRNKY
VKINWDNVKGGIKNINFSRWKISSSEYFGGKFDTQSIMMYGNYAFAKDSN
YMTMISKERPTDLLGQREGLSQNDIVQLNNKYKCDKNLCRDKFGICSKYK
HMCNDATWFEFRPNCALTCKVCKPQKDTHTDNSTEVKGTDSIILSDSKGP
TTNKTTTFKKTTTIPTNDENIDTEFEISW
Run BLAST on NCBI

transcript from alignment at scaffold_71:542101..547740+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072115 ID=TCONS_00072115|Name=TCONS_00072115|organism=Clytia hemisphaerica|type=transcript|length=5640bp|location=Sequence derived from alignment at scaffold_71:542101..547740+ (Clytia hemisphaerica)
tttcaaaaaacgcGAAAGAGAattcagaaaataaaattttcagatatAAA
TCAACattcaaactaaaaatatttgtaaatgtTTGTAATTCAAATCATAA
AACGAAGCAAACAAAATATTAACAGTAATTTTAGCAATTTATCGCATTTT
TTTCGAATGCTAACAAGCTTTGGCTAGAAATCAGTTTTGTGAAAGCAACT
GGTGAACAtgcagaaaatgtttgaaagaaTTATATTGTTGCTAGCTTTTG
GACTCGTTATTACTACTACCGGTAGGTGATAAGCTTTTCACAAATAATtt
ttcagatgagatggagctTTCATAacatactttaataattggtcatttaa
agtaataaaaatgacgcattctttagaaaaagtaacaaaatcgttttatt
actggttaacgaccaaccaaatcaaataagagcttgtaaaaactccatct
cgtccctaaTTTTTCAGAACGAATTTAGGGTCATCGCTTTAGACAACGTC
CGGGTCAGATAACGTCCGGGGAATTGAATAAAATGGTCCTGATTGCTACT
GCTTGTCCCCTtgcagtctgttcctctaaagaatcctgcattgtaacaca
catgcgtaatttgtcgttcttttaaaccacatgcagtaaattcccgtgat
aaacaaagaggaatgaatcagTAGGGGTGCtacagtcactttcagtcggG
TTTGTGGACGGGGAAATATGtcgtttttaatgaaatttgtcgttcttttt
gtctatttttagtaatgcaggattatTTAGATAAACCCACTCCTTGgttg
ttttttaattgaaaattcaagagtgggaaattcttttttctataagagcc
agtaaaattttctataagagccagtaaaattttgctaaggcttcttattt
ttttggcactttgaaccccaaattgttcttatcctgttcttatttatagg
gtgtgATTGATGTATTTTAGACGTTATACCTAACCTTTACTACTTTACTA
CTAACCCCTAAATCACTTGAAATTGAGTGATTCCCAGGTTCAgcgttgtt
cttaaattgttctcattttatggccattttgagcctcattgttcttataa
aattcttccaataaaaaaataagtgtaagggatatttttatttttctaca
gCGCTGTAAATAAGGGCAACATCACATGCCGTTTTTCTGGGCCTTGAGTA
GGGACATAgctcatctaacgtttccagttCACCCAAATAGAAACGCAAGC
GTATTTTATCGTTCTTTAAACCGTTGAACAGCGTAAAATATGAAAAGTAA
TAAATACAAAGGGGTGGTGTCACTTTTAAGGTCGGGGGAGGGGATGGTTA
AATATGtcgtcttttgtcttttttttaaatgtaatttGTCGTTTATTTTA
GATGGCCTGGAAACGTTAGTTGAACAGTCTGTTTTATAACCCCACTGCCC
CctataaatgtttttaaagctTAAAAACTTCGACTACCTTGTAGCTTCTT
CAACCATGAATAATACGGAAAGCTTGAGATCAGTCGATGACAATACTTTT
GACCGTATTCAAACGATCAAccagaagtacggaggtaatgcACATTCAAT
TTCAGCTGTAATAGCTTTACAGGGGGACAGGAGGCAAGTGTCCCCTTATT
AACGTGGAGAGGTgggaattttataagaacatccaaaatttcttaAACCT
TTaaggatgttcttagctttttgagtttgagcctaaaaatgttcttaaaa
ggTTCTTAATGTGCagtttttttagtatttttgcccatttacCTAAGAAG
TTGGGTGTTTTagggtctgcaaagccttaaactgTTCTTcagttgttctt
aatattttaaccattatatagtttgtttttatgaagaaaaaaacgtgtGA
TTCCTACATGGGAAGTATATTAACAACAGTTTGCGATTCCAACTACAGAA
GATAACTGGTTGAAGGCCAAAAAgctcatttttttaatgaaaagcccCAA
ACAGTTTTTATCAGTCATCCTTTTGACCTCCCAAATTAAACAAATTAGCG
AGAAATAtcagaagaaaattttaaaagcctatctgaaactgaaaatttca
aaaaatatgaacAATTTGAACCAAGATATATCGGTTGTTATAAAAATCAT
TTAGTACTAGGGGTACAATGAATTAATCTATAAAACTTTTTCTTGaccac
agtcggaggcgacccgaaggctcctttttCGATAGTTATCTAACCGAAGg
aaggggagggcgccactctttctcacTGGATTGCTTCACTTCACACCANT
CTAACCGAAGGAAGGGGAGGACGCCACTCTTTCTcactggattgctccac
ttacccttgatccttctcttaattgctgagcatcaagctgataggcatca
agtaccattttaggAATCATGGGTATGACCAAGCTTcggattgaacccac
aaccttgcgcacagTGGCCGGAtcctctaccactgcactacgatCGCTTT
CTTATTATAAACATTACAGAAAAAGATGACCTTGTTGAGGCAGACATCAA
GATGAatccaaaaatccaaaaattacTGAGTCAGCAAAATGAGCAAACCA
GTGGTGATAAACAACAAACTGGATCGaaacgaaagatttttcaataCATG
CTTAACCAATGGCCAAACGCAACTGTACCTTATGTTTTCGCCTCCGCATT
CGGTAAGGAAAGCCCTTATTCAAGATTATTTATCTGCAATTTCATCACAA
ACTTTTAACGGCTACACGGACGAGTAGAGTTTAGTATTGTTTTAAGCCTA
CGGGTGTATTTGACTTTTCTagttttaaggctaaaaatgttcactatttt
ttgaatgttttttgtgCGATTCCCTAATAAATTGGGTGTTTTTTTTAGTC
CgcgaagccttgaaatgttgttaacttgttcttaataataTCTTGGCCAt
taaagccttatgtttttatgaaaaacctTCACTTTAccataacatttttt
ttttacttcagaatGGCGAAAAGAAGTGAAACAAGCGATTGGAATAATCG
AATCAGTTTCGTGTATCCGATTTATACGCAGAACCGATGAGAAGAACTAC
ATCCGATTCGTTCACAGTCTCGGGTAATTTTTTGTATGAATATACTTTAT
GAGAATATTAATAATGCAAAATTGGCCCAAAAGAGTAACAATATAGTAAG
AATAACACCATCATGGTATTTGGTCACTGAACCTaaaagaatgccatttt
ttagagaatttttaacggtaaattgccaattattccccagcaatgctaaa
tagttcaacaaaatttttgcttgagGTATGATTTACATGCTTGATTTTGA
CTGGAATTGGATCCAGACCTAAGAAGACTAACCGTAACAAACCTTTTTAG
TCAGCAGAGAAGAGTTTGGTAAGGCTATATAGAGGCAGAAGTGTCCTATT
ATAAATGTTTTGAGCTGTTTGGAAGAGAATGAATTCATAAACATTTCATA
TATTGGAATTAAAGGTGTTGGTCATTGGTGGGAAAATTTCGTTATCCGAC
GCGTCAACATATTTCACTTGGTCCTGGCTGCAACAACCAAGGCATAATAT
TACACGAGCTACTACACGCACTTGGATTTTTCCATGAAATCTCAAGAGAG
GATAGAAATAAATATGTCAAAATTAACTGGGATAATGTAAAGGGTGAGCG
CTTAACTGTGTGTATTATATTCTTTCTGAGAAAGGATTGTTGCTAGAGAT
AAGGTTGGATAAGACCCTAATGGCAGTTTCTATTATATTTGGTGAGTACG
TCAACTTGGGATATGTAAAGAAGAGCTGAAGGTCGATTTTGGACGTAATA
ATTGTGGCCCAAATTTAGCATATATTCTATCAATAGATTGAACGTTGTTA
ACATTCTTGAAAATTATGGTCAAATTATGGTCAAAGATAATTTTGTGTAG
CCAATTTTGACCCTCAGCTTGCGGAGAAAGGAAAGTATCATTAGATTTTC
AACACTAGCAGCCAGTCATCCAAAACAGACGCTAACAAAGTACTTTTTCA
CTTTCTAGGAggaataaaaaatatcaacttttcgAGATGGAAAATATCGA
GCAGTGAatattttggcgggaaatttGATACCCAATCGATTATGATGTAC
GGAAAGTAAGTTCAAAACTGCTTCTCTTTGTTTGACccaaaagaaaataa
acaaattgaATTCTGGTCAAGACATACAAAATTCTCGGGAGATCTCTTGA
AGGGTTAGGTGGTAACACCAATCACGATTCTGGtttattttcaaaaggtt
tATAGACGCCCACCTCGGGCCTGTGAGCTTGTATACTTTATAATAACGAC
CATCAAGGCTCTTAGACGTGATTTTTGTCATGGTCCAAGTATTGGAGCCA
TTTATAGAAAGAATATGCTCGACGGgacttttgaaagtttaaagtttGAT
AGTGTTAGTGTTAATGAAATAAATATTGATTCTTCTCTGCTTGATATTTC
AGCTATGCCTTTGCGAAAGACTCTAACTACATGACAATGATTTCTAAAGA
GAGGCCAACAGATCTTCTTGGACAACGCGAGGGTTTATCACAAAATGACA
TCGTACAACTAAACAACAAGTATAAATGCGATAAAAACTTATGTAGAGAC
AAATTTGGTATTTGCTCCAAATATAAGCACATGTGTAATGATGCAACGTG
GTTCGAATTTCGTCCAAACTGTGCTCTAACATGCAAAGTGTGCAAGCCGC
AAAAAGATACACATACGGATAACTCAACTGAAGTAAAAGGTACTGACAGT
ATCATATTGAGTGATTCAAAAGGACCGACCACAAACAAAACGACCACCTT
TAAAAAGACAACGACCATTCCTACGAATGACGAAAATATTGACaccgaat
ttgaaatttcatgGTAACTTGTTTGAGGATTTGAGGTATATATCCGTCGG
CACTACATTCGATTATTTCACTATTCGACATCTAGTTGACAAGAGCATAT
TCTAATCAATCTTttagattacacgttttttttatttggaaaagTCCTTT
AGGAGATATTTTGAGTAGTGTGGAGTGGCACTCTATGGAATAAAGAAACA
TAGAAGCTTGTTTTAAAATGACACTGCTGAATTTTATTCAAAGCTGTACC
TTTCAAAGATCCACTGAGGGCGAGGCTGGACAACCCGCCCAGATACCATA
CATCTATCAGGTCGTCTATAAAGTCTATAACACAGGGACAGTGCTAGACT
AGCCTGTGGGTTATTTCTTTCATAGCTGGCAGACCCATGGGGCCTCTGTT
AGACAAGCCCCGGGTACCTTCTAGGAGTGACCCTAATACTTCCGCTAACA
CTTATTATATAGCATTCCTTAAATATACTTTAGAATACATATAATCAGGG
TCAAAAGACTCACTCTGTGTCAATCTCTTGTCTCCCGGCTCAAAGCTACT
ATGCTTGAAATCAGGACGTTAAAAAAACAATTACCTCATCCAGCTCaaga
ctttttttgaaaatgggccAAGGTTCAATCTCGTTCATTCCACTGAAATT
TCGGCaaatggcatttttgatttctgatgtTGGAGGTTTTCCATCATATT
TCTTTGCCAAACAAAATACCAGTTTGATCAGgctgaaaaa

Coding sequence (CDS) from alignment at scaffold_71:542101..547740+

>TCONS_00072115 ID=TCONS_00072115|Name=TCONS_00072115|organism=Clytia hemisphaerica|type=CDS|length=7980bp|location=Sequence derived from alignment at scaffold_71:542101..547740+ (Clytia hemisphaerica)
AtgcagaaaatgtttgaaagaaTTATATTGTTGCTAGCTTTTGGACTCGT
TATTACTACTACCGCTTCTTCAACCATGAATAATACGGAAAGCTTGAGAT
CAGTCGATGACAATACTTTTGACCGTATTCAAACGATCAAccagaagtac
ggagAAAAAGATGACCTTGTTGAGGCAGACATCAAGATGAatccaaaaat
ccaaaaattacTGAGTCAGCAAAATGAGCAAACCAGTGGTGATAAACAAC
AAACTGGATCGaaacgaaagatttttcaataCATGCTTAACCAATGGCCA
AACGCAACTGTACCTTATGTTTTCGCCTCCGCATTCGaatGGCGAAAAGA
AGTGAAACAAGCGATTGGAATAATCGAATCAGTTTCGTGTATCCGATTTA
TACGCAGAACCGATGAGAAGAACTACATCCGATTCGTTCACAGTCTCGGG
TGTTGGTCATTGGTGGGAAAATTTCGTTATCCGACGCGTCAACATATTTC
ACTTGGTCCTGGCTGCAACAACCAAGGCATAATATTACACGAGCTACTAC
ACGCACTTGGATTTTTCCATGAAATCTCAAGAGAGGATAGAAATAAATAT
GTCAAAATTAACTGGGATAATGTAAAGGGAggaataaaaaatatcaactt
ttcgAGATGGAAAATATCGAGCAGTGAatattttggcgggaaatttGATA
CCCAATCGATTATGATGTACGGAAACTATGCCTTTGCGAAAGACTCTAAC
TACATGACAATGATTTCTAAAGAGAGGCCAACAGATCTTCTTGGACAACG
CGAGGGTTTATCACAAAATGACATCGTACAACTAAACAACAAGTATAAAT
GCGATAAAAACTTATGTAGAGACAAATTTGGTATTTGCTCCAAATATAAG
CACATGTGTAATGATGCAACGTGGTTCGAATTTCGTCCAAACTGTGCTCT
AACATGCAAAGTGTGCAAGCCGCAAAAAGATACACATACGGATAACTCAA
CTGAAGTAAAAGGTACTGACAGTATCATATTGAGTGATTCAAAAGGACCG
ACCACAAACAAAACGACCACCTTTAAAAAGACAACGACCATTCCTACGAA
TGACGAAAATATTGACaccgaatttgaaatttcatgGTAAAtgcagaaaa
tgtttgaaagaaTTATATTGTTGCTAGCTTTTGGACTCGTTATTACTACT
ACCGCTTCTTCAACCATGAATAATACGGAAAGCTTGAGATCAGTCGATGA
CAATACTTTTGACCGTATTCAAACGATCAAccagaagtacggagAAAAAG
ATGACCTTGTTGAGGCAGACATCAAGATGAatccaaaaatccaaaaatta
cTGAGTCAGCAAAATGAGCAAACCAGTGGTGATAAACAACAAACTGGATC
GaaacgaaagatttttcaataCATGCTTAACCAATGGCCAAACGCAACTG
TACCTTATGTTTTCGCCTCCGCATTCGaatGGCGAAAAGAAGTGAAACAA
GCGATTGGAATAATCGAATCAGTTTCGTGTATCCGATTTATACGCAGAAC
CGATGAGAAGAACTACATCCGATTCGTTCACAGTCTCGGGTGTTGGTCAT
TGGTGGGAAAATTTCGTTATCCGACGCGTCAACATATTTCACTTGGTCCT
GGCTGCAACAACCAAGGCATAATATTACACGAGCTACTACACGCACTTGG
ATTTTTCCATGAAATCTCAAGAGAGGATAGAAATAAATATGTCAAAATTA
ACTGGGATAATGTAAAGGGAggaataaaaaatatcaacttttcgAGATGG
AAAATATCGAGCAGTGAatattttggcgggaaatttGATACCCAATCGAT
TATGATGTACGGAAACTATGCCTTTGCGAAAGACTCTAACTACATGACAA
TGATTTCTAAAGAGAGGCCAACAGATCTTCTTGGACAACGCGAGGGTTTA
TCACAAAATGACATCGTACAACTAAACAACAAGTATAAATGCGATAAAAA
CTTATGTAGAGACAAATTTGGTATTTGCTCCAAATATAAGCACATGTGTA
ATGATGCAACGTGGTTCGAATTTCGTCCAAACTGTGCTCTAACATGCAAA
GTGTGCAAGCCGCAAAAAGATACACATACGGATAACTCAACTGAAGTAAA
AGGTACTGACAGTATCATATTGAGTGATTCAAAAGGACCGACCACAAACA
AAACGACCACCTTTAAAAAGACAACGACCATTCCTACGAATGACGAAAAT
ATTGACaccgaatttgaaatttcatgGTAAAtgcagaaaatgtttgaaag
aaTTATATTGTTGCTAGCTTTTGGACTCGTTATTACTACTACCGCTTCTT
CAACCATGAATAATACGGAAAGCTTGAGATCAGTCGATGACAATACTTTT
GACCGTATTCAAACGATCAAccagaagtacggagAAAAAGATGACCTTGT
TGAGGCAGACATCAAGATGAatccaaaaatccaaaaattacTGAGTCAGC
AAAATGAGCAAACCAGTGGTGATAAACAACAAACTGGATCGaaacgaaag
atttttcaataCATGCTTAACCAATGGCCAAACGCAACTGTACCTTATGT
TTTCGCCTCCGCATTCGaatGGCGAAAAGAAGTGAAACAAGCGATTGGAA
TAATCGAATCAGTTTCGTGTATCCGATTTATACGCAGAACCGATGAGAAG
AACTACATCCGATTCGTTCACAGTCTCGGGTGTTGGTCATTGGTGGGAAA
ATTTCGTTATCCGACGCGTCAACATATTTCACTTGGTCCTGGCTGCAACA
ACCAAGGCATAATATTACACGAGCTACTACACGCACTTGGATTTTTCCAT
GAAATCTCAAGAGAGGATAGAAATAAATATGTCAAAATTAACTGGGATAA
TGTAAAGGGAggaataaaaaatatcaacttttcgAGATGGAAAATATCGA
GCAGTGAatattttggcgggaaatttGATACCCAATCGATTATGATGTAC
GGAAACTATGCCTTTGCGAAAGACTCTAACTACATGACAATGATTTCTAA
AGAGAGGCCAACAGATCTTCTTGGACAACGCGAGGGTTTATCACAAAATG
ACATCGTACAACTAAACAACAAGTATAAATGCGATAAAAACTTATGTAGA
GACAAATTTGGTATTTGCTCCAAATATAAGCACATGTGTAATGATGCAAC
GTGGTTCGAATTTCGTCCAAACTGTGCTCTAACATGCAAAGTGTGCAAGC
CGCAAAAAGATACACATACGGATAACTCAACTGAAGTAAAAGGTACTGAC
AGTATCATATTGAGTGATTCAAAAGGACCGACCACAAACAAAACGACCAC
CTTTAAAAAGACAACGACCATTCCTACGAATGACGAAAATATTGACaccg
aatttgaaatttcatgGTAAAtgcagaaaatgtttgaaagaaTTATATTG
TTGCTAGCTTTTGGACTCGTTATTACTACTACCGCTTCTTCAACCATGAA
TAATACGGAAAGCTTGAGATCAGTCGATGACAATACTTTTGACCGTATTC
AAACGATCAAccagaagtacggagAAAAAGATGACCTTGTTGAGGCAGAC
ATCAAGATGAatccaaaaatccaaaaattacTGAGTCAGCAAAATGAGCA
AACCAGTGGTGATAAACAACAAACTGGATCGaaacgaaagatttttcaat
aCATGCTTAACCAATGGCCAAACGCAACTGTACCTTATGTTTTCGCCTCC
GCATTCGaatGGCGAAAAGAAGTGAAACAAGCGATTGGAATAATCGAATC
AGTTTCGTGTATCCGATTTATACGCAGAACCGATGAGAAGAACTACATCC
GATTCGTTCACAGTCTCGGGTGTTGGTCATTGGTGGGAAAATTTCGTTAT
CCGACGCGTCAACATATTTCACTTGGTCCTGGCTGCAACAACCAAGGCAT
AATATTACACGAGCTACTACACGCACTTGGATTTTTCCATGAAATCTCAA
GAGAGGATAGAAATAAATATGTCAAAATTAACTGGGATAATGTAAAGGGA
ggaataaaaaatatcaacttttcgAGATGGAAAATATCGAGCAGTGAata
ttttggcgggaaatttGATACCCAATCGATTATGATGTACGGAAACTATG
CCTTTGCGAAAGACTCTAACTACATGACAATGATTTCTAAAGAGAGGCCA
ACAGATCTTCTTGGACAACGCGAGGGTTTATCACAAAATGACATCGTACA
ACTAAACAACAAGTATAAATGCGATAAAAACTTATGTAGAGACAAATTTG
GTATTTGCTCCAAATATAAGCACATGTGTAATGATGCAACGTGGTTCGAA
TTTCGTCCAAACTGTGCTCTAACATGCAAAGTGTGCAAGCCGCAAAAAGA
TACACATACGGATAACTCAACTGAAGTAAAAGGTACTGACAGTATCATAT
TGAGTGATTCAAAAGGACCGACCACAAACAAAACGACCACCTTTAAAAAG
ACAACGACCATTCCTACGAATGACGAAAATATTGACaccgaatttgaaat
ttcatgGTAAAtgcagaaaatgtttgaaagaaTTATATTGTTGCTAGCTT
TTGGACTCGTTATTACTACTACCGCTTCTTCAACCATGAATAATACGGAA
AGCTTGAGATCAGTCGATGACAATACTTTTGACCGTATTCAAACGATCAA
ccagaagtacggagAAAAAGATGACCTTGTTGAGGCAGACATCAAGATGA
atccaaaaatccaaaaattacTGAGTCAGCAAAATGAGCAAACCAGTGGT
GATAAACAACAAACTGGATCGaaacgaaagatttttcaataCATGCTTAA
CCAATGGCCAAACGCAACTGTACCTTATGTTTTCGCCTCCGCATTCGaat
GGCGAAAAGAAGTGAAACAAGCGATTGGAATAATCGAATCAGTTTCGTGT
ATCCGATTTATACGCAGAACCGATGAGAAGAACTACATCCGATTCGTTCA
CAGTCTCGGGTGTTGGTCATTGGTGGGAAAATTTCGTTATCCGACGCGTC
AACATATTTCACTTGGTCCTGGCTGCAACAACCAAGGCATAATATTACAC
GAGCTACTACACGCACTTGGATTTTTCCATGAAATCTCAAGAGAGGATAG
AAATAAATATGTCAAAATTAACTGGGATAATGTAAAGGGAggaataaaaa
atatcaacttttcgAGATGGAAAATATCGAGCAGTGAatattttggcggg
aaatttGATACCCAATCGATTATGATGTACGGAAACTATGCCTTTGCGAA
AGACTCTAACTACATGACAATGATTTCTAAAGAGAGGCCAACAGATCTTC
TTGGACAACGCGAGGGTTTATCACAAAATGACATCGTACAACTAAACAAC
AAGTATAAATGCGATAAAAACTTATGTAGAGACAAATTTGGTATTTGCTC
CAAATATAAGCACATGTGTAATGATGCAACGTGGTTCGAATTTCGTCCAA
ACTGTGCTCTAACATGCAAAGTGTGCAAGCCGCAAAAAGATACACATACG
GATAACTCAACTGAAGTAAAAGGTACTGACAGTATCATATTGAGTGATTC
AAAAGGACCGACCACAAACAAAACGACCACCTTTAAAAAGACAACGACCA
TTCCTACGAATGACGAAAATATTGACaccgaatttgaaatttcatgGTAA
AtgcagaaaatgtttgaaagaaTTATATTGTTGCTAGCTTTTGGACTCGT
TATTACTACTACCGCTTCTTCAACCATGAATAATACGGAAAGCTTGAGAT
CAGTCGATGACAATACTTTTGACCGTATTCAAACGATCAAccagaagtac
ggagAAAAAGATGACCTTGTTGAGGCAGACATCAAGATGAatccaaaaat
ccaaaaattacTGAGTCAGCAAAATGAGCAAACCAGTGGTGATAAACAAC
AAACTGGATCGaaacgaaagatttttcaataCATGCTTAACCAATGGCCA
AACGCAACTGTACCTTATGTTTTCGCCTCCGCATTCGaatGGCGAAAAGA
AGTGAAACAAGCGATTGGAATAATCGAATCAGTTTCGTGTATCCGATTTA
TACGCAGAACCGATGAGAAGAACTACATCCGATTCGTTCACAGTCTCGGG
TGTTGGTCATTGGTGGGAAAATTTCGTTATCCGACGCGTCAACATATTTC
ACTTGGTCCTGGCTGCAACAACCAAGGCATAATATTACACGAGCTACTAC
ACGCACTTGGATTTTTCCATGAAATCTCAAGAGAGGATAGAAATAAATAT
GTCAAAATTAACTGGGATAATGTAAAGGGAggaataaaaaatatcaactt
ttcgAGATGGAAAATATCGAGCAGTGAatattttggcgggaaatttGATA
CCCAATCGATTATGATGTACGGAAACTATGCCTTTGCGAAAGACTCTAAC
TACATGACAATGATTTCTAAAGAGAGGCCAACAGATCTTCTTGGACAACG
CGAGGGTTTATCACAAAATGACATCGTACAACTAAACAACAAGTATAAAT
GCGATAAAAACTTATGTAGAGACAAATTTGGTATTTGCTCCAAATATAAG
CACATGTGTAATGATGCAACGTGGTTCGAATTTCGTCCAAACTGTGCTCT
AACATGCAAAGTGTGCAAGCCGCAAAAAGATACACATACGGATAACTCAA
CTGAAGTAAAAGGTACTGACAGTATCATATTGAGTGATTCAAAAGGACCG
ACCACAAACAAAACGACCACCTTTAAAAAGACAACGACCATTCCTACGAA
TGACGAAAATATTGACaccgaatttgaaatttcatgGTAAAtgcagaaaa
tgtttgaaagaaTTATATTGTTGCTAGCTTTTGGACTCGTTATTACTACT
ACCGCTTCTTCAACCATGAATAATACGGAAAGCTTGAGATCAGTCGATGA
CAATACTTTTGACCGTATTCAAACGATCAAccagaagtacggagAAAAAG
ATGACCTTGTTGAGGCAGACATCAAGATGAatccaaaaatccaaaaatta
cTGAGTCAGCAAAATGAGCAAACCAGTGGTGATAAACAACAAACTGGATC
GaaacgaaagatttttcaataCATGCTTAACCAATGGCCAAACGCAACTG
TACCTTATGTTTTCGCCTCCGCATTCGaatGGCGAAAAGAAGTGAAACAA
GCGATTGGAATAATCGAATCAGTTTCGTGTATCCGATTTATACGCAGAAC
CGATGAGAAGAACTACATCCGATTCGTTCACAGTCTCGGGTGTTGGTCAT
TGGTGGGAAAATTTCGTTATCCGACGCGTCAACATATTTCACTTGGTCCT
GGCTGCAACAACCAAGGCATAATATTACACGAGCTACTACACGCACTTGG
ATTTTTCCATGAAATCTCAAGAGAGGATAGAAATAAATATGTCAAAATTA
ACTGGGATAATGTAAAGGGAggaataaaaaatatcaacttttcgAGATGG
AAAATATCGAGCAGTGAatattttggcgggaaatttGATACCCAATCGAT
TATGATGTACGGAAACTATGCCTTTGCGAAAGACTCTAACTACATGACAA
TGATTTCTAAAGAGAGGCCAACAGATCTTCTTGGACAACGCGAGGGTTTA
TCACAAAATGACATCGTACAACTAAACAACAAGTATAAATGCGATAAAAA
CTTATGTAGAGACAAATTTGGTATTTGCTCCAAATATAAGCACATGTGTA
ATGATGCAACGTGGTTCGAATTTCGTCCAAACTGTGCTCTAACATGCAAA
GTGTGCAAGCCGCAAAAAGATACACATACGGATAACTCAACTGAAGTAAA
AGGTACTGACAGTATCATATTGAGTGATTCAAAAGGACCGACCACAAACA
AAACGACCACCTTTAAAAAGACAACGACCATTCCTACGAATGACGAAAAT
ATTGACaccgaatttgaaatttcatgGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044790XLOC_044790Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072115-proteinTCONS_00072115-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072115-exon-scaffold_71-1491911889:542101..542371TCONS_00072115-exon-scaffold_71-1491911889:542101..542371Clytia hemisphaericaexon
TCONS_00072115-exon-scaffold_71-1510915933:542101..542371TCONS_00072115-exon-scaffold_71-1510915933:542101..542371Clytia hemisphaericaexon
TCONS_00072115-exon-scaffold_71-1575043694:542101..542371TCONS_00072115-exon-scaffold_71-1575043694:542101..542371Clytia hemisphaericaexon
TCONS_00072115-exon-scaffold_71-1491911889:543595..543684TCONS_00072115-exon-scaffold_71-1491911889:543595..543684Clytia hemisphaericaexon
TCONS_00072115-exon-scaffold_71-1510915933:543595..543684TCONS_00072115-exon-scaffold_71-1510915933:543595..543684Clytia hemisphaericaexon
TCONS_00072115-exon-scaffold_71-1575043694:543595..543684TCONS_00072115-exon-scaffold_71-1575043694:543595..543684Clytia hemisphaericaexon
TCONS_00072115-exon-scaffold_71-1491911889:544620..544802TCONS_00072115-exon-scaffold_71-1491911889:544620..544802Clytia hemisphaericaexon
TCONS_00072115-exon-scaffold_71-1510915933:544620..544802TCONS_00072115-exon-scaffold_71-1510915933:544620..544802Clytia hemisphaericaexon
TCONS_00072115-exon-scaffold_71-1575043694:544620..544802TCONS_00072115-exon-scaffold_71-1575043694:544620..544802Clytia hemisphaericaexon
TCONS_00072115-exon-scaffold_71-1491911889:545112..545223TCONS_00072115-exon-scaffold_71-1491911889:545112..545223Clytia hemisphaericaexon
TCONS_00072115-exon-scaffold_71-1510915933:545112..545223TCONS_00072115-exon-scaffold_71-1510915933:545112..545223Clytia hemisphaericaexon
TCONS_00072115-exon-scaffold_71-1575043694:545112..545223TCONS_00072115-exon-scaffold_71-1575043694:545112..545223Clytia hemisphaericaexon
TCONS_00072115-exon-scaffold_71-1491911889:545615..545793TCONS_00072115-exon-scaffold_71-1491911889:545615..545793Clytia hemisphaericaexon
TCONS_00072115-exon-scaffold_71-1510915933:545615..545793TCONS_00072115-exon-scaffold_71-1510915933:545615..545793Clytia hemisphaericaexon
TCONS_00072115-exon-scaffold_71-1575043694:545615..545793TCONS_00072115-exon-scaffold_71-1575043694:545615..545793Clytia hemisphaericaexon
TCONS_00072115-exon-scaffold_71-1491911889:546159..546255TCONS_00072115-exon-scaffold_71-1491911889:546159..546255Clytia hemisphaericaexon
TCONS_00072115-exon-scaffold_71-1510915933:546159..546255TCONS_00072115-exon-scaffold_71-1510915933:546159..546255Clytia hemisphaericaexon
TCONS_00072115-exon-scaffold_71-1575043694:546159..546255TCONS_00072115-exon-scaffold_71-1575043694:546159..546255Clytia hemisphaericaexon
TCONS_00072115-exon-scaffold_71-1491911889:546603..547740TCONS_00072115-exon-scaffold_71-1491911889:546603..547740Clytia hemisphaericaexon
TCONS_00072115-exon-scaffold_71-1510915933:546603..547740TCONS_00072115-exon-scaffold_71-1510915933:546603..547740Clytia hemisphaericaexon
TCONS_00072115-exon-scaffold_71-1575043694:546603..547740TCONS_00072115-exon-scaffold_71-1575043694:546603..547740Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:542101..547740 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.158776	0.0751032	0	0.0257086	0.0609459	0.269605	0.413019	0.0327341	0.0600735	0	0.0129925	0.0385716	0.132935	0	0.0354403	2.27785	1.85247	0	0.0215615	1.7828	1.79769	2.12288	1.91825	2.70177	3.7924	0.748916	0.286899	0.0218353	0.022169
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001506Peptidase_M12A
IPR006026Peptidase_Metallo
IPR024079MetalloPept_cat_dom
IPR003582ShKT_dom
IPR034035Astacin-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004222metalloendopeptidase activity
GO:0008237metallopeptidase activity
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004222 metalloendopeptidase activity
molecular_function GO:0008237 metallopeptidase activity
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00072115 vs. Swiss-Prot (Human)
Match: ASTL (Astacin-like metalloendopeptidase OS=Homo sapiens GN=ASTL PE=1 SV=4)

HSP 1 Score: 120.939 bits (302), Expect = 4.163e-29
Identity = 70/215 (32.56%), Postives = 117/215 (54.42%), Query Frame = 1 
Query:  466 SKRKIFQYMLNQWPNAT-----VPYVFASAFE--WRKEVKQAIGIIESVSCIRFIRRTDEKNYIRFVHSLGCWSLVGKFRYPTRQHISLGPGC--NNQGIILHELLHALGFFHEISREDRNKYVKINWDNVKGGIKNINFSRWKISSSEYFGGKFDTQSIMMYGNYAFAKDSNYMTMISKERPTDLLGQREGLSQNDIVQLNNKYKCDKNLCRDK 1083
            S  ++     N+WP        VP++ +S ++   R+ + +A+   E  +CIRF+   D++++I  +   GC+S VG  R    Q +SL P C    +GI+LHEL+H LGF+HE +R DR++Y+++NW+ +  G + INF +   S S      +D  S+M YG  AF++     T+     P+  +GQR  LS +DI ++   Y C  +  R +
Sbjct:   82 SPFRLLSATSNKWPMGGSGVVEVPFLLSSKYDEPSRQVILEALAEFERSTCIRFVTYQDQRDFISIIPMYGCFSSVG--RSGGMQVVSLAPTCLQKGRGIVLHELMHVLGFWHEHTRADRDRYIRVNWNEILPGFE-INFIK---SQSSNMLTPYDYSSVMHYGRLAFSRR-GLPTITPLWAPSVHIGQRWNLSASDITRVLKLYGCSPSGPRPR 289
The following BLAST results are available for this feature:
BLAST of TCONS_00072115 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ASTL4.163e-2932.56Astacin-like metalloendopeptidase OS=Homo sapiens ... [more]
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