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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072112 ID=TCONS_00072112|Name=TCONS_00072112|organism=Clytia hemisphaerica|type=transcript|length=1803bp
tttaaatatttaatttttctgtattttttacGCGAAAATTCTCTATGAGT
TTTatgatttattcattttttttattataaacaaGTAATACATCTAATAg
aagaataaaaatttaaattttgatcatgtgacagtgttagaaaaaaattg
ttaatgtttttgtgtgaattcTACTGTTCGTATTATGTCATTCTATGTCT
AGCCGACAAGCATCATCTCACAGTTTGAACGGGTCAAATCAGTCATCAAA
ATCCATAAATTCTTGAATTTGAACAACTGATTAAAATCACGTCTATCACT
ATACCATGATACCAGCAATGGTGTGTCTCATGCTGTCACAAATATTCTTC
TTGTAAAGTCACATACCCCTNgatgcaatttttttttaaatatttaattt
ttctgtattttttacGCGAAAATTCTCTATGAGTTTTatgatttattcat
tttttttattataaacaaGTAATACATCTAATAgaagaataaaaatttaa
attttgatcatgtgacagtgttagaaaaaaattgttaatgtttttgtgtg
aattcTACTGTTCGTATTATGTCATTCTATGTCTAGCCGACAAGCATCAT
CTCACAGTTTGAACGGGTCAAATCAGTCATCAAAATCCATAAATTCTTGA
ATTTGAACAACTGATTAAAATCACGTCTATCACTATACCATGATACCAGC
AATGGTGTGTCTCATGCTGTCACAAATATTCTTCTTGTAAAGTCACATAC
CCCTTAGCTCTTTTATTTACTCTCGGGTAGCTATTAGCCGCggggtttgg
aaaaaatctcaaaacttaataagcgggtggggttggaataaaatggtgta
aaattttcgaaaaggagaCCAATACAGcaaaattagggcaaaagagggaa
ctttgaaaagaaattttccaaaaaccaATAAgcaccccccccccggctat
taggtacccgagagtaaggcTCTCATGGATTatctaggctgcacgcatcc
atCTCNaaaaagccccccccccccggctattaggtacccgagagtaaggc
TCTCATGGATTatctaggctgcacgcatccatCTCCTTTGATATGTCAAA
GGCCTCAAAAAGTGACCTTTTCGAGTGTAGCCTAGGATTAGCCCGAGTAT
TTCTAAGAAGGGTACACCTTACATCTGCTTTATTTCCAACTTAATTTTCA
AAGTGCCGTAAGTTggtttaatatcgacatccctcttctaattccgacac
ccttctttggGATAGGAATAGTAGGAAGGccagaatcactgatagacaaa
agacCTTTTCCTCTCTGAAAGCTAAGCAAAGaaatagtttccatcagcga
ttccgaccgtCCTAATATTCCCAAGTCTAAAGACGAATGTCGAGCTTata
tgagggatgtcgacattaggcTTAAGGAACAATAGAGCAGCAAGAAGGTA
GTGACTCTAAGAAATAATGCGTTGTTTGATTTGTTGGTAAGCCAATACAA
AGATTGTTATCACTTATTGTTGACCACCAGAAGATATGCTCTAAAGAAAA
TTATCCACCAACGTTATCCAACTGTATTACAGAGTCGAACAAACAATCAA
GCTCTAACATTAAAAACGCATCTTTACGTTTCTAATTAAAGATTGAGGCA
GCCCATGAACCGCGAGTCCTTTTATGTAAGCGATCTTGAACATAAGTTAA
ATCCGGTAAATTAGTACAGTTCCCTATAGCAGCCATTGATGGTTTTGTGG
CCAACATTTCTTCTGAGATGCGACGTAAATCCTCGCTAGTCACAGcatct
gaa Run BLAST on NCBI transcript from alignment at scaffold_71:377615..379549+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072112 ID=TCONS_00072112|Name=TCONS_00072112|organism=Clytia hemisphaerica|type=transcript|length=1935bp|location=Sequence derived from alignment at scaffold_71:377615..379549+ (Clytia hemisphaerica)
tttaaatatttaatttttctgtattttttacGCGAAAATTCTCTATGAGT
TTTatgatttattcattttttttattataaacaaGTAATACATCTAATAg
aagaataaaaatttaaattttgatcatgtgacagtgttagaaaaaaattg
ttaatgtttttgtgtgaattcTACTGTTCGTATTATGTCATTCTATGTCT
AGCCGACAAGCATCATCTCACAGTTTGAACGGGTCAAATCAGTCATCAAA
ATCCATAAATTCTTGAATTTGAACAACTGATTAAAATCACGTCTATCACT
ATACCATGATACCAGCAATGGTGTGTCTCATGCTGTCACAAATATTCTTC
TTGTAAAGTCACATACCCCTNgatgcaatttttttttaaatatttaattt
ttctgtattttttacGCGAAAATTCTCTATGAGTTTTatgatttattcat
tttttttattataaacaaGTAATACATCTAATAgaagaataaaaatttaa
attttgatcatgtgacagtgttagaaaaaaattgttaatgtttttgtgtg
aattcTACTGTTCGTATTATGTCATTCTATGTCTAGCCGACAAGCATCAT
CTCACAGTTTGAACGGGTCAAATCAGTCATCAAAATCCATAAATTCTTGA
ATTTGAACAACTGATTAAAATCACGTCTATCACTATACCATGATACCAGC
AATGGTGTGTCTCATGCTGTCACAAATATTCTTCTTGTAAAGTCACATAC
CCCTTAGCTCTTTTATTTACTCTCGGGTAGCTATTAGCCGCggggtttgg
aaaaaatctcaaaacttaataagcgggtggggttggaataaaatggtgta
aaattttcgaaaaggagaCCAATACAGcaaaattagggcaaaagagggaa
ctttgaaaagaaattttccaaaaaccaATAAgcaccccccccccggctat
taggtacccgagagtaaggcTCTCATGGATTatctaggctgcacgcatcc
atCTCNaaaaagccccccccccccggctattaggtacccgagagtaaggc
TCTCATGGATTatctaggctgcacgcatccatCTCCTTTGATATGTCAAA
GGCCTCAAAAAGTGACCTTTTCGAGTGTAGCCTAGGATTAGCCCGAGTAT
TTCTAAGAAGGGTACACCTTACATCTGCTTTATTTCCAACTTAATTTTCA
AAGTGCCGTAAGTTggtttaatatcgacatccctcttctaattccgacac
ccttctttggGATAGGAATAGTAGGAAGGccagaatcactgatagacaaa
agacCTTTTCCTCTCTGAAAGCTAAGCAAAGaaatagtttccatcagcga
ttccgaccgtCCTAATATTCCCAAGTCTAAAGACGAATGTCGAGCTTata
tgagggatgtcgacattaggcTTAAGGAACAATAGAGCAGCAAGAAGGTA
GTGACTCTAAGAAATAATGCGTTGTTTGATTTGTTGGTAAGCCAATACAA
AGATTGTTATCACTTATTGTTGACCACCAGAAGATATGCTCTAAAGAAAA
TTATCCACCAACGTTATCCAACTGTATTACAGAGTCGAACAAACAATCAA
GCTCTAACATTAAAAACGCATCTTTACGTTTCTAATTAAAGATTGAGGCA
GCCCATGAACCGCGAGTCCTTTTATGTAAGCGATCTTGAACATAAGTTAA
ATCCGGTAAATTAGTACAGTTCCCTATAGCAGCCATTGATGGTTTTGTGG
CCAACATTTCTTCTGAGATGCGACGTAANTGCAAGGATTtccaaagctct
atttacatgtgtgtgcacttCTAAGGATCAGATCACACTTCGCATGAAGA
CATAAAGgttttttagagaaattaaaaacttNCCAACATTTCTTCTGAGA
TGCGACGTAAATCCTCGCTAGTCACAGcatctgaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072112-exon-scaffold_71-1491911889:377615..379369 | TCONS_00072112-exon-scaffold_71-1491911889:377615..379369 | Clytia hemisphaerica | exon |
| TCONS_00072112-exon-scaffold_71-1510915933:377615..379369 | TCONS_00072112-exon-scaffold_71-1510915933:377615..379369 | Clytia hemisphaerica | exon |
| TCONS_00072112-exon-scaffold_71-1575043694:377615..379369 | TCONS_00072112-exon-scaffold_71-1575043694:377615..379369 | Clytia hemisphaerica | exon |
| TCONS_00072112-exon-scaffold_71-1491911889:379502..379549 | TCONS_00072112-exon-scaffold_71-1491911889:379502..379549 | Clytia hemisphaerica | exon |
| TCONS_00072112-exon-scaffold_71-1510915933:379502..379549 | TCONS_00072112-exon-scaffold_71-1510915933:379502..379549 | Clytia hemisphaerica | exon |
| TCONS_00072112-exon-scaffold_71-1575043694:379502..379549 | TCONS_00072112-exon-scaffold_71-1575043694:379502..379549 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_71 | supercontig | scaffold_71:377615..379549 + |
Blast
The following BLAST results are available for this feature:
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