TCONS_00072111 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072111
Unique NameTCONS_00072111
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length600

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072111 ID=TCONS_00072111|Name=TCONS_00072111|organism=Clytia hemisphaerica|type=transcript|length=600bp
CTCAGTGATTAATGGCTTGAGTCTGGAGCAGTTTTGTATTTTCCTTGATA
AAGACAAGCGTTCCAGTCTTGGTTGAATTCCAATTTTCCTGGACAAGCAA
CACATCCAACAGTAACTCCTTGCCAACAAGCAACGTATTGTCGTTTTTCA
GCTGGGTCAGCCACATTTCCACTGAATTCTGGTCCATAATGGGGGCATTT
GTCTGGACAATTGAAAGTGGTGGCTGGTTGCCATGCCTCTGTGGTAACGC
AATCATCTTTTTTGTTATAAAGACATTGGTTACACGTTTCACtgaattgt
aaacttaatggccaACAAGCTTGACAATAAGCATTTCCTCCGAGACATTG
GACGAAGTAACTTGCCTGTCCATAGATGTTGTAGTTTCCATCAGCTTTTC
CATGACATAATTTATTTGGACAATCGATTGCTGGTGGTGTTGTGCCAGTG
ATGTCGGGAACTTTCAAGCCACTGATAGCTAGAATGAAGGAAGAATGTGA
TGAATTCTTTTGATCGACAAAAGAAGTGAAGTCGAATTAGCCTCAGATAA
CGTTCGATGGCTTGATTGGTAAACACtgtcacacccctgtctcgctgCCC
Run BLAST on NCBI

transcript from alignment at scaffold_71:334458..335109+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072111 ID=TCONS_00072111|Name=TCONS_00072111|organism=Clytia hemisphaerica|type=transcript|length=652bp|location=Sequence derived from alignment at scaffold_71:334458..335109+ (Clytia hemisphaerica)
CTCAGTGATTAATGGCTTGAGTCTGGAGCAGTTTTGTATTTTCCTTGATA
AAGACAAGCGTTCCAGTCTTGGTTGAATTCCAATTTTCCTGGACAAGCAA
CACATCCAACAGTAACTCCTTGCCAACAAGCAACGTATTGTCGTTTTTCA
GCTGGGTCAGCCACATTTCCACTGAATTCCNGCAACGTATTGTCGTTTTT
CAGCTGGATCAGCCACATTTCCACTGAATTCTGGTCCATAATGGGGGCAT
TTGTCTGGACAATTGAAAGTGGTGGCTGGTTGCCATGCCTCTGTGGTAAC
GCAATCATCTTTTTTGTTATAAAGACATTGGTTACACGTTTCACtgaatt
gtaaacttaatggccaACAAGCTTGACAATAAGCATTTCCTCCGAGACAT
TGGACGAAGTAACTTGCCTGTCCATAGATGTTGTAGTTTCCATCAGCTTT
TCCATGACATAATTTATTTGGACAATCGATTGCTGGTGGTGTTGTGCCAG
TGATGTCGGGAACTTTCAAGCCACTGATAGCTAGAATGAAGGAAGAATGT
GATGAATTCTTTTGATCGACAAAAGAAGTGAAGTCGAATTAGCCTCAGAT
AACGTTCGATGGCTTGATTGGTAAACACtgtcacacccctgtctcgctgC
CC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044787XLOC_044787Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072111-exon-scaffold_71-1491911889:334458..334621TCONS_00072111-exon-scaffold_71-1491911889:334458..334621Clytia hemisphaericaexon
TCONS_00072111-exon-scaffold_71-1510915933:334458..334621TCONS_00072111-exon-scaffold_71-1510915933:334458..334621Clytia hemisphaericaexon
TCONS_00072111-exon-scaffold_71-1575043694:334458..334621TCONS_00072111-exon-scaffold_71-1575043694:334458..334621Clytia hemisphaericaexon
TCONS_00072111-exon-scaffold_71-1491911889:334674..335109TCONS_00072111-exon-scaffold_71-1491911889:334674..335109Clytia hemisphaericaexon
TCONS_00072111-exon-scaffold_71-1510915933:334674..335109TCONS_00072111-exon-scaffold_71-1510915933:334674..335109Clytia hemisphaericaexon
TCONS_00072111-exon-scaffold_71-1575043694:334674..335109TCONS_00072111-exon-scaffold_71-1575043694:334674..335109Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:334458..335109 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0884818	0	0	0.364857	3.63345e-08	0.116655	0.218423	1.17384	0.489312	1.10313	3.03569	13.6927	5.82836	19.2405	9.88758	6.06171	0	0.0964543	0	0.0877286	0	0.104036	0.189168	0.335362	0.0821895	0.124417	0	0.10071	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072111 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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