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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072105 ID=TCONS_00072105|Name=TCONS_00072105|organism=Clytia hemisphaerica|type=transcript|length=349bp
TACGAATACAGTGTCAGATGTAATCAATGTTTGTTCAAGAAGAACGAAGA
TGGATGTGATGGTGAGAACCAATCGTTACGTCTAATCGTCTCCAACTTCT
TTTGTCCTGATGCATGCTCAGAAAGAGAGGACAATAATCTCACTGGTATG
GTTGCAGACCCTTACAGTAAACGACAGTTTGTAGCCTGTTGGAAGGGGAA
GACTATAGGTTGTTTATCCTGTCCAAGAGATTTGATTTATaatgaagaag
agaatgaaTGTCTTTTTGAAGGTGGATTTAGAAGTGAAGGGGAAAATGAC
TACATTGATTGGTTGGCTTCCTTCTAAAAGATCTGGTAACGAACCTACA Run BLAST on NCBI protein sequence of TCONS_00072105-protein >TCONS_00072105-protein ID=TCONS_00072105-protein|Name=TCONS_00072105-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
YEYSVRCNQCLFKKNEDGCDGENQSLRLIVSNFFCPDACSEREDNNLTGM
VADPYSKRQFVACWKGKTIGCLSCPRDLIYNEEENECLFEGGFRSEGEND
YIDWLASF Run BLAST on NCBI transcript from alignment at scaffold_71:152403..153486+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072105 ID=TCONS_00072105|Name=TCONS_00072105|organism=Clytia hemisphaerica|type=transcript|length=1084bp|location=Sequence derived from alignment at scaffold_71:152403..153486+ (Clytia hemisphaerica)
TACGAATACAGTGTCAGATGTAATCAATGTTTGTTCAAGAAGAACGAAGG
tgacaaattttaaaaattcttcatttttctaaGTGAAAAGCTGAGATCTT
TTATTAAATGAATTAACGGCAAAACGCTAAAAATGGCAGCTTCTTCTTCT
CCAGAtgtttataagatttttttcccATTCTATAATTAATGATTCAATTC
CTGATTTAATTGCTGAGCTTTCAATCAACAGCATTTACAGAACCAAGGAT
GCAATAATTTCGCCGCTACTGGAACGATTGTCTTACCATTAACCCTTCTA
GCatctttgaaaactttttacataACTTTTGGAATGTGTATCCAATgggc
ttgaaaatttttttaagtgtgCTTTCAAGTGTGCACCAAATATGAATTGG
TATCTTTGGTAAAAATTTAAGCATCATTAATGACGCCATTGTGACTTGAT
CATTCTTTGAAGTGCCGAAAATAAGACCCTTCTCTAACTTTCTTTcactc
tgattttttgcttaaattttgTTAAACGCAGGGTCAATTCATCGCCATCT
GCTGGCATcgtatattttacagaccggtagCTAAAGCAAAATAATCTGCC
ATCTTCGATAAGTAGACACAAGTTTggtgccggcaatttgatcgATCAAA
CCAATCTTTCACCTCGTCGCTTTGCTTCATTCAGGTTTTTTTGCCATTGT
TTGAGAAATACTGAGTAGCTCTATTTAGTATTTTATTTAAGATATCTATG
GCCCTAGGTTACTGTATCTTTATTATTTTGACAGATGGATGTGATGGTGA
GAACCAATCGTTACGTCTAATCGTCTCCAACTTCTTTTGTCCTGATGCAT
GCTCAGAAAGAGAGGACAATAATCTCACTGGTATGGTTGCAGACCCTTAC
AGTAAACGACAGTTTGTAGCCTGTTGGAAGGGGAAGACTATAGGTTGTTT
ATCCTGTCCAAGAGATTTGATTTATaatgaagaagagaatgaaTGTCTTT
TTGAAGGTGGATTTAGAAGTGAAGGGGAAAATGACTACATTGATTGGTTG
GCTTCCTTCTAAAAGATCTGGTAACGAACCTACA Coding sequence (CDS) from alignment at scaffold_71:152403..153486+ >TCONS_00072105 ID=TCONS_00072105|Name=TCONS_00072105|organism=Clytia hemisphaerica|type=CDS|length=654bp|location=Sequence derived from alignment at scaffold_71:152403..153486+ (Clytia hemisphaerica)
TACGAATACAGTGTCAGATGTAATCAATGTTTGTTCAAGAAGAACGAAGA
TGGATGTGATGGTGAGAACCAATCGTTACGTCTAATCGTCTCCAACTTCT
TTTGTCCTGATGCATGCTCAGAAAGAGAGGACAATAATCTCACTGGTATG
GTTGCAGACCCTTACAGTAAACGACAGTTTGTAGCCTGTTGGAAGGGGAA
GACTATAGGTTGTTTATCCTGTCCAAGAGATTTGATTTATaatgaagaag
agaatgaaTGTCTTTTTGAAGGTGGATTTAGAAGTGAAGGGGAAAATGAC
TACATTGATTGGTTGGCTTCCTTCTAATACGAATACAGTGTCAGATGTAA
TCAATGTTTGTTCAAGAAGAACGAAGATGGATGTGATGGTGAGAACCAAT
CGTTACGTCTAATCGTCTCCAACTTCTTTTGTCCTGATGCATGCTCAGAA
AGAGAGGACAATAATCTCACTGGTATGGTTGCAGACCCTTACAGTAAACG
ACAGTTTGTAGCCTGTTGGAAGGGGAAGACTATAGGTTGTTTATCCTGTC
CAAGAGATTTGATTTATaatgaagaagagaatgaaTGTCTTTTTGAAGGT
GGATTTAGAAGTGAAGGGGAAAATGACTACATTGATTGGTTGGCTTCCTT
CTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072105-exon-scaffold_71-1491911889:152403..152451 | TCONS_00072105-exon-scaffold_71-1491911889:152403..152451 | Clytia hemisphaerica | exon |
| TCONS_00072105-exon-scaffold_71-1510915933:152403..152451 | TCONS_00072105-exon-scaffold_71-1510915933:152403..152451 | Clytia hemisphaerica | exon |
| TCONS_00072105-exon-scaffold_71-1575043694:152403..152451 | TCONS_00072105-exon-scaffold_71-1575043694:152403..152451 | Clytia hemisphaerica | exon |
| TCONS_00072105-exon-scaffold_71-1491911889:153187..153486 | TCONS_00072105-exon-scaffold_71-1491911889:153187..153486 | Clytia hemisphaerica | exon |
| TCONS_00072105-exon-scaffold_71-1510915933:153187..153486 | TCONS_00072105-exon-scaffold_71-1510915933:153187..153486 | Clytia hemisphaerica | exon |
| TCONS_00072105-exon-scaffold_71-1575043694:153187..153486 | TCONS_00072105-exon-scaffold_71-1575043694:153187..153486 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_71 | supercontig | scaffold_71:152403..153486 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002557 | Chitin-bd_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006030 | chitin metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008061 | chitin binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006030 |
chitin metabolic process |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0008061 |
chitin binding |
Blast
The following BLAST results are available for this feature:
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