|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072091 ID=TCONS_00072091|Name=TCONS_00072091|organism=Clytia hemisphaerica|type=transcript|length=1935bpRun BLAST on NCBI protein sequence of TCONS_00072091-protein >TCONS_00072091-protein ID=TCONS_00072091-protein|Name=TCONS_00072091-protein|organism=Clytia hemisphaerica|type=polypeptide|length=644bp DLFDQNKPISEYSEELQKSLVEISNTEEKVFENVLNNINFFLWMRESMKGRun BLAST on NCBI transcript from alignment at scaffold_71:25980..40327+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072091 ID=TCONS_00072091|Name=TCONS_00072091|organism=Clytia hemisphaerica|type=transcript|length=14348bp|location=Sequence derived from alignment at scaffold_71:25980..40327+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_71:25980..40327+ >TCONS_00072091 ID=TCONS_00072091|Name=TCONS_00072091|organism=Clytia hemisphaerica|type=CDS|length=25116bp|location=Sequence derived from alignment at scaffold_71:25980..40327+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00072091 vs. Swiss-Prot (Human)
Match: RN213 (E3 ubiquitin-protein ligase RNF213 OS=Homo sapiens GN=RNF213 PE=1 SV=3) HSP 1 Score: 83.9593 bits (206), Expect = 1.974e-16 Identity = 66/247 (26.72%), Postives = 114/247 (46.15%), Query Frame = 3
Query: 45 ELQKSLVEISNTEEKVFENVLNNINFFLWMRESMKGPQEVKTFVDLVTNSAGESDYEHDRILDFESVCQAFRPIIFNVRREASFGDL--HIACNETSIHTNTDIFYKLSDCKRNLEWFKHMKRIQGSASTKTFEQIKAINKKGEYTIGIAQPDYEMFLTEDIDMKKVVRLQFTSKKTGTRDLLLTEIEDLQSSLMLL-GREARGGAENHDEAETEKTIFVQHTELAIQLGTLYVDLCQMGDVASFNW 776
+ +K L +IS K + + F W+RE++ G E+K FVDL + SAGE+D + DR+ F Q + ++F + F H+ ++ + + KL D RNLEW K + GS + AIN++G Y I P ++ D + ++ S + +R+ L E+++L + LML+ G++ R N+ E E +F +L ++DL G++ W
Sbjct: 1402 QAKKLLQDISEARCKGLQALSLRKEFICWVREALGGINELKVFVDLASISAGENDIDVDRVACFHDAVQGYASLLFKLDPSVDFSAFMKHLKKLWKALDKDQYLPRKLCDSARNLEWLKTVNESHGSVERSSLTLATAINQRGIYV--IQAPKGGQKISPDTVLHLILPESPGSHEE-SREYSLEEVKELLNKLMLMSGKKDR----NNTEVERFSEVFCS----VQRLSQAFIDLHSAGNMLFRTW 1637 The following BLAST results are available for this feature:
BLAST of TCONS_00072091 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.