TCONS_00072085 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072085
Unique NameTCONS_00072085
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length268

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072085 ID=TCONS_00072085|Name=TCONS_00072085|organism=Clytia hemisphaerica|type=transcript|length=268bp
NNTTCTTTGGCTAGgtaattttaacaaattatagAAAGCAAACAGAAGCA
AACTATATAAATTAATCAGTCAGTCatcataatgaaattaattttgagag
GTAATTTTGGAGGTAGTTCTTAATATTGTGAAATGCTCTGACTGTTAAta
ccaaaattatttgtttgtgTAACAATTTTATTGTAGCGTAAGGGACTTAT
TGTCTATACTTTGTCATCTAAGTATCATTTTCAATCGTCAATTAAtcctc
agaaaaaattaaatcagg
Run BLAST on NCBI

transcript from alignment at scaffold_70:106383..106650

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072085 ID=TCONS_00072085|Name=TCONS_00072085|organism=Clytia hemisphaerica|type=transcript|length=268bp|location=Sequence derived from alignment at scaffold_70:106383..106650 (Clytia hemisphaerica)
cctgatttaattttttctgaggaTTAATTGACGATTGAAAATGATACTTA
GATGACAAAGTATAGACAATAAGTCCCTTACGCTACAATAAAATTGTTAc
acaaacaaataattttggtaTTAACAGTCAGAGCATTTCACAATATTAAG
AACTACCTCCAAAATTACctctcaaaattaatttcattatgatGACTGAC
TGATTAATTTATATAGTTTGCTTCTGTTTGCTTTctataatttgttaaaa
ttacCTAGCCAAAGAANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044772XLOC_044772Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072085-exon-scaffold_70-1491911889:106383..106650TCONS_00072085-exon-scaffold_70-1491911889:106383..106650Clytia hemisphaericaexon
TCONS_00072085-exon-scaffold_70-1510915933:106383..106650TCONS_00072085-exon-scaffold_70-1510915933:106383..106650Clytia hemisphaericaexon
TCONS_00072085-exon-scaffold_70-1575043694:106383..106650TCONS_00072085-exon-scaffold_70-1575043694:106383..106650Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_70supercontigscaffold_70:106383..106650 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.360313	0	0	0	1.57291	0	1.12829	1.40386	1.41085	2.47914	5.1409	3.19675	0.417759	3.28128	2.13679	0.41148	0	0.586859	1.23988	8.30831	6.63905	2.07154	1.05836	0	0.958822	0	9.26313	8.87564	9.08737	6.00811
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072085 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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