TCONS_00072082 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072082
Unique NameTCONS_00072082
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length527

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072082 ID=TCONS_00072082|Name=TCONS_00072082|organism=Clytia hemisphaerica|type=transcript|length=527bp
GGAAAATTACACCGGAATGGTTTTGAtaagtattttgtaaatttgttgcA
GAAATTCcagactttcttgaaagcaatttgctacagaaattccatgtcgt
ccattggggggtaTCAGATAAAAACTGGAATGGTCCAAATAACCTTTTTT
AACCTACTCATTATTATGATATAAATATAGACACTGGTATTCTGGTATAG
GACAATTGTGTAGTGATCACAGCATAAGGATTGGGTCTAACAGAACAAAC
TTTGAAATCAATAGCCGTGGTGGCAGTCAATTTTAGaccgatttttgaaa
acacaagTCAAAATAGTCATTTGGGAGAATTTGATGGCCTAtagaataac
aaattactccagccCAGACTGTACTAATCAATAAATTCGATTATCAAGTG
ATCGATAATGATCTGATCAAAGTAATCGAACTCGACTACATATCGATTAA
CAATTGAATTTCGAGTGAGTATtcaatcactttcttaacaacccttcgaA
GACTCGATAATCAttcgagtactttga
Run BLAST on NCBI

transcript from alignment at scaffold_70:46529..47055

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072082 ID=TCONS_00072082|Name=TCONS_00072082|organism=Clytia hemisphaerica|type=transcript|length=527bp|location=Sequence derived from alignment at scaffold_70:46529..47055 (Clytia hemisphaerica)
tcaaagtactcgaaTGATTATCGAGTCTtcgaagggttgttaagaaagtg
attgaATACTCACTCGAAATTCAATTGTTAATCGATATGTAGTCGAGTTC
GATTACTTTGATCAGATCATTATCGATCACTTGATAATCGAATTTATTGA
TTAGTACAGTCTGggctggagtaatttgttattctaTAGGCCATCAAATT
CTCCCAAATGACTATTTTGActtgtgttttcaaaaatcggtCTAAAATTG
ACTGCCACCACGGCTATTGATTTCAAAGTTTGTTCTGTTAGACCCAATCC
TTATGCTGTGATCACTACACAATTGTCCTATACCAGAATACCAGTGTCTA
TATTTATATCATAATAATGAGTAGGTTAAAAAAGGTTATTTGGACCATTC
CAGTTTTTATCTGAtaccccccaatggacgacatggaatttctgtagcaa
attgctttcaagaaagtctgGAATTTCTgcaacaaatttacaaaatactt
aTCAAAACCATTCCGGTGTAATTTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044769XLOC_044769Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072082-exon-scaffold_70-1491911889:46529..47055TCONS_00072082-exon-scaffold_70-1491911889:46529..47055Clytia hemisphaericaexon
TCONS_00072082-exon-scaffold_70-1510915933:46529..47055TCONS_00072082-exon-scaffold_70-1510915933:46529..47055Clytia hemisphaericaexon
TCONS_00072082-exon-scaffold_70-1575043694:46529..47055TCONS_00072082-exon-scaffold_70-1575043694:46529..47055Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_70supercontigscaffold_70:46529..47055 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.334696	0.326381	0.884239	0.617921	0.150452	0.356667	0	0.805691	0.0940139	0.349354	1.69546	0.222905	0.0741985	0.308224	0.253402	0.203954	0.167503	0.0858427	0	0.248205	0.43147	0.473526	0	0.116296	0.119783	0.320709	0.458934	0.326525	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072082 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top