TCONS_00072078 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072078
Unique NameTCONS_00072078
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1007

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072078 ID=TCONS_00072078|Name=TCONS_00072078|organism=Clytia hemisphaerica|type=transcript|length=1007bp
AGAACAGCATGGATTTCATCAGAAGCACATGGCCGACTTTAACTGGAGGA
AGGATTTGGTAGAAATTTCTTGATACAGATAGAACTGAGGATTAGTTAGT
AGTTACAGTCAAGTTGCTTGtccatttttttatttacaattataaatatt
aagatttttttctcttttatttttagaaaaaacctAGACcacaaaaataa
tatcaaatgtCTTTTGCAAGAAGTTTATTCAGGTTTTCAAAGTCCTGTGG
GCAAGCTGTTGTTTGTTCAACCTCATCTAAGACTGTCATAAGAAAGCCAA
TACAAAATTTTGCACCCAATAATATATCCAGGTCTATTTTACAGTCAAGC
TGTAGATGTTTTCACACTGAAGGTGACGGAGACTTGgcaaactttttaaa
agaagaaattgcttatgaagaagaaaatgtgaCTGACGGGCCAGAATTGC
ATAATTTTACGGTGGATATCCAGGGTCCGAAAGTTAATTTGTCAAGAAAC
TTCAATGGAGAAAGAGTTGACGTCGTTTTCAATATCAATGAGAACGAGAA
TGTGGATGAAGGATTGAACATTGAAGAATCGGAATACAGTCAAGACCAAG
ATGATGTCTCTCTACCAGAGGTATAATATAACTCAATTTGAGTCAAAAAT
GATATACTGCACGTAAGCACGaaataatatatataatatCCTACTCAGCG
AGGAGGTAAAGCcatttcaatctttttccaaGCAACTCTATTTTGCCAGA
TGTTGAACATGGCCGTCCAACTTTAGTGAAAGGTCCAAAAGAGGCTTAAA
ATTGACTCTTTTCAGTACAGAAGAAATAAAACAAAGCTTTAAAAGCTAAT
TAGGGCGAAAGAAATTACCCTTATggtacattttttgaaaatgttatttt
aagtTAAGAATGGCCAGAAATTTTGCCCAAAAAGATACGATGAATTACGA
tgatgttttcaaaatttcgcTACTACTTTTTACAGTCACTACATAACCCC
CTAAATA
Run BLAST on NCBI

transcript from alignment at scaffold_70:184621..189607-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072078 ID=TCONS_00072078|Name=TCONS_00072078|organism=Clytia hemisphaerica|type=transcript|length=4987bp|location=Sequence derived from alignment at scaffold_70:184621..189607- (Clytia hemisphaerica)
AGAACAGCATGGATTTCATCAGAAGCACATGGCCGACTTTAACTGGAGGA
AGGATTTGGTAGAAATTTCTTGATACAGATAGAACTGAGGATTAGTTAGT
AGTTACAGTCAAGTTGCTTGTCCATTTTTTTATTTACAATTATAAATATT
AAGATTTTTTTCTCTTTTATTTTTAGAAAAAACCTAGACCACAAAAATAA
TATCAAATGTCTTTTGCAAGAAGTTTATTCAGGTTTTCAAAGTCCTGTGG
GCAAGCTGTTGTTTGTTCAACCTCATCTAAGACTGTCATAAGAAAGCCAA
TACAAAATTTTGCACCCAATAATATATCCAGGTCTATTTTACAGTCAAGC
TGTAGATGTTTTCACACTGAAGGTAACAGAACAAAAAACCTTGCCTTGTA
GGGCCACATTTTTGCACCCAAAAAGGTGCGCATGCTACGTTCAAATCATT
GGGCTCCTCCTGAGAAAATCCAATATAATGGGGTGGACGACAGGAACTTT
AAGACTAAAAATGCACTTGGAACTCTAGCTAGTCAGATTTCTGTAATGCT
ATATATATACCTAAGTTCCGCTCCATTTTGTAGTCATATAACATATACTG
TACCAGACGTCCGCGCTCAATAGGATCGTTAAGTAATTCATCGATTACAT
ATCGATCCGTCATCAAGCCGTTCCGATGATCGACCCTATCGAGCGCGGAT
GTCTGGACTGTAACAAAATGTGTCAATTTTTTTTTTTTTTGAATTTCAAA
AAAATATTTCAATCTGCTGCCCCCTGTAATAGAAACTTTAACCCTAGGCT
GCATTTTTGTAAATCTTTGACAGTAGGAAGAAGGACCCTGCCGACGCACC
GGACTGTCCGGTGTATTTGTCCGGTGGCAAAAAGTATCCTTTCGCTACAC
CGGATGCAATAAGTCCAGTGTCAGAGTCCAGTGTCAGAGTCCGGTGTTGC
ATACAGGGAATTTTGGACGCCAGACATTTATGAAACAAAAAATTAAGAAA
CACCGGACCCACGCCGGACTTGTCATGTCCGGTGTTTTGATAGATTGTCC
GGTGGAAAAAAATATCCTTCTTCAACACCGGACATCTGACTTCTTTAAGT
CCGGTGTAGAGATTGTCCGGTGGTAAAAAAAATTCTCATTTTACACCGGA
CTTTCGCGTGTCCGGTGTTCGTTAAGTCCGGTGCGTCGGCAGGGTCCTTA
GGAAGACTATATGTATATGTAGACCTTTTCCAATGACAATGTCATGTTTA
AAAAAATTAATGAACACTAAAATAATCATGCATATCTTATCAAGTTATGA
CTTTTTTTAGGACTCAAAACTTTTTCATTAGAAAGAGAAACTGAGAGAAA
GGCTAAACTTAGATTTTGATGAGTCATTCGTTGAGTTTGGTCCGCAATAT
CAAAAGTCATGCTTGAATAAGAAAATCATTTCTATTATTAAATTCTTATT
GAACAGAGACAGTGAATTATTACCTTTCGCCCAAATAAAGTGTTTTATAA
ATTGCGACTAAAATTAGAAAATCTTGAAAATATCCAATTTATCCTGAAAT
TGGATCTAATTTTTGACCCCAAAATTTCGAGAGTGATGCTGATTGGGCTC
TTCCAGAAAAAAAATTGAATATGGGGAGTGGAAGATCTAACACTTTTTGG
AAATATACCTCCCCCCCCCCAGGACAAGCATAAATTGACCCCCGGGACAT
TCATAATTACCCTAATCAGAGCAATTTTGCCTGCTAAACAAGGCAAATTT
TGTAGATTTTTCACTAATTCTAACTTATTTCTTGCACACCTGGTATTGTT
AACCTGGCTTTAGGGTACTAAAATCTTTAGGCTTGAATTTAATTTGAGAG
ATTAAGATTATTCTAAACTTGTACTCAAAAAGTTTTTTGGTTTTGTTTTA
GGTGACGGAGACTTGGCAAACTTTTTAAAAGAAGAAATTGCTTATGAAGA
AGAAAATGTGACTGACGGGCCAGAATTGCATAATTTTACGGTATGATTAT
CGTACATTATTATCTGTAACAGTACTGTACGCACCTCTAAAAGTTTCCAG
AGTCTTACTTAAGTCTTATAGTTTGTGGTTTATACAATTAGGGTGAAGTT
TTCTTTTAGTCAACTTCCTGTAACCTCTATTGGGCTCTTCCAGAAAATGT
TCGTACATGAGGGGTGGAGGATATTTTGTCTGGGGGGTAGCAAAAAATCA
TCAAAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTCCGGGGGGGGGGGTAAATTTGCTCTGTCC
GGGGGTAATTTGGGTTGTCCGGGGGTCAACTGATGCTTGTCCGGGGACCA
AAAGTCACTTTGTTCAGGGGATAAATCACTGAAAATTGTTATATCCTCCA
CCCCCCATATTCTAGCTTTTTCTGGAAAAGCCCATTATGATTTTGCTTCT
AATTAAGAATTTGTCATGATAGACCGTTTGAAAAAAAAAATTTGAAATAG
ATCATTTTTCTTTTATACGTCATTTATAGACAATGAAATTGTATGACTTA
TATTTTTTAGGTGGATATCCAGGGTCCGAAAGTTAATTTGTCAAGAAACT
TCAATGGAGAAAGGTAAAAACTTCACCAAATTTTTATTTAATTCTTGAGA
AAGATAGAATGTGAGCTTAGCTATCTTAGCTATCTGGAGAAAGAATGTGG
TCTACATATCTGCATTACTTTGGTTATTGAATTTCCTAATAGAAAAGGTT
CACGAGTATATACACGTATTTTTTTTGTAAGAACATCCAAACATTTTGAA
ACCTCCAGATATTCTTAACTTTTTGAGTTTTTAAAGCCTAAAAATGTTTT
TATTTTCATCAATGAGTGAGTGTTTTTATCCATTCTCCTAAGAAATTGGG
TGTTTTAGGGTCAACAAAGCCTTAAATGTTCTTAACTTATTCTCAATATT
TTGACCATTGAAGTCTTATGTTCTTATATAGTTTGTTCTTATAAAAGAAG
AAACGTGTACCTTAACCCTTTCCGGACGCATGATTTCACGGTTATATGAC
GCAAACAAAAATTTGATTTTTGACTGGCTTCACTAAAATTGCAATAGAAA
GTGATCGATAAAAGATATCACGATAAGTAATACCTTGTTTTTTTCACATG
TAATAAGGGTTTTGAAATACCAAAAAAAAATTTTTAAATATGGCTGACAC
CTGGTCACGTGACCTAAAAATCGGCAGATTTTTTTTCGGAAAGGGAAGAT
TTTTGACTTTGAATAAAGAAATAGAGCTAAAGGCATTTACTTTACGCCTT
GAACTTTGAATATGATTTAGAGATTTGAATTACTGGCCGGGTAAAAAAAA
TTTCATGTCAAAAGCTTTCCAAGAATCTGAGTAAAGTGATTTTTTGTCCA
AATTTTTGAGCAATTTTTCCCTTACAGATTTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TGAGTAAATTTACAACAAACATTGAAAATTTATAATTCTAGTTGTAAACA
AGATATCGAAAAGCGGTTTTTTGCAGGTTACGGGAAATTTATGTCAAAAT
CATTATTCAAAACCATGTTATTGTATTTTGGCGCGAAAACTGTTAAAATC
TTTTACAAAGCTATCCCGTGCGTCATATAGGAACACGATTCATGGGCCAC
CCAGTGGCCCGTGCGTCCGGAAAGGGTTAAGGGAAGAAATTTTCGTGGAA
TTTAATTTTGTGGTTGAGAAGAATTTTTGTTTAAAAAATATGGCTCATTT
TGCCCCAAAAACACCAATCAATTCTATAGGTGATTTTTTAATCATGAGAA
TATTCTTGTTTCGCGGATTTGTCAAAAAACTGCGAAATTAAATTCCGCAA
AAATTTGTTCCCTTAAGGTACCTGTTTTTTTTAATTTCATGCAGAGTTGA
CGTCGTTTTCAATATCAATGAGAACGAGAATGTGGATGAAGGATTGAACA
TTGAAGAATCGGAATACAGTCAAGACCAAGATGATGTCTCTCTACCAGAG
GTATAATATAACTCAATTTGAGTCAAAAATGATATACTGCACGTAAGCAC
GAAATAATATATATAATATCCTACTCAGCGAGGAGGTAAAGCCATTTCAA
TCTTTTTCCAAGCAACTCTATTTTGCCAGATGTTGAACATGGCCGTCCAA
CTTTAGTGAAAGGTCCAAAAGAGGCTTAAAATTGACTCTTTTCAGTACAG
AAGAAATAAAACAAAGCTTTAAAAGCTAATTAGGGCGAAAGAAATTACCC
TTATGGTACATTTTTTGAAAATGTTATTTTAAGTTAAGAATGGCCAGAAA
TTTTGCCCAAAAAGATACGATGAATTACGATGATGTTTTCAAAATTTCGC
TACTACTTTTTACAGTCACTACATAACCCCCTAAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044765XLOC_044765Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072078-exon-scaffold_70-1575043694:189236..189607TCONS_00072078-exon-scaffold_70-1575043694:189236..189607Clytia hemisphaericaexon
TCONS_00072078-exon-scaffold_70-1575043694:187618..187706TCONS_00072078-exon-scaffold_70-1575043694:187618..187706Clytia hemisphaericaexon
TCONS_00072078-exon-scaffold_70-1575043694:186495..186547TCONS_00072078-exon-scaffold_70-1575043694:186495..186547Clytia hemisphaericaexon
TCONS_00072078-exon-scaffold_70-1575043694:184621..185113TCONS_00072078-exon-scaffold_70-1575043694:184621..185113Clytia hemisphaericaexon
TCONS_00072078-exon-scaffold_70-1510915933:189236..189607TCONS_00072078-exon-scaffold_70-1510915933:189236..189607Clytia hemisphaericaexon
TCONS_00072078-exon-scaffold_70-1510915933:187618..187706TCONS_00072078-exon-scaffold_70-1510915933:187618..187706Clytia hemisphaericaexon
TCONS_00072078-exon-scaffold_70-1510915933:186495..186547TCONS_00072078-exon-scaffold_70-1510915933:186495..186547Clytia hemisphaericaexon
TCONS_00072078-exon-scaffold_70-1510915933:184621..185113TCONS_00072078-exon-scaffold_70-1510915933:184621..185113Clytia hemisphaericaexon
TCONS_00072078-exon-scaffold_70-1491911889:189236..189607TCONS_00072078-exon-scaffold_70-1491911889:189236..189607Clytia hemisphaericaexon
TCONS_00072078-exon-scaffold_70-1491911889:187618..187706TCONS_00072078-exon-scaffold_70-1491911889:187618..187706Clytia hemisphaericaexon
TCONS_00072078-exon-scaffold_70-1491911889:186495..186547TCONS_00072078-exon-scaffold_70-1491911889:186495..186547Clytia hemisphaericaexon
TCONS_00072078-exon-scaffold_70-1491911889:184621..185113TCONS_00072078-exon-scaffold_70-1491911889:184621..185113Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_70supercontigscaffold_70:184621..189607 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.9844	12.0655	6.26248	13.1525	8.62488	5.15895	12.1	7.72821	9.61138	18.5927	14.9991	7.08329	13.4252	4.28679	9.95527	12.6914	19.822	18.6922	0	2.25182	4.37268	5.82686	2.13221	4.15807	1.02049	0	3.08734e-05	0	0	3.30217
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072078 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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