TCONS_00072076 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072076
Unique NameTCONS_00072076
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1614

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072076 ID=TCONS_00072076|Name=TCONS_00072076|organism=Clytia hemisphaerica|type=transcript|length=1614bp
CGATAAACAGTTTAAGTTGAAAAGttgAAAGCATCAAAAGGACATCCAAA
TCTGGGGAATACCAACAATAACCAATACAGCATGGCACCAACACCTCTTA
CAACCATTATAGTCTTTCATTCTTATCCACAAAAACCTTGCATAGATGGG
CTGATGGCTGCAATCATTGCTACATGGATTTACCAAAGCAGATCATCTAA
AGTGCGCCTTGTACCTTACTCCAGAACTAAAAAATCCTTTGACAGGCTGA
AACAAACAGTCGAGGAGACTGATGTTATGGGAGATTTTGGCAGACAACAG
ATTGTGTATGTTGATTGTACACCAGATCTGGAGGAGGAGATAGAGTTCCT
GGAGAAGATTGTTGATAAGATTCCGATCACGGTTTACGATCATCACCAGA
TGCGAGATGATGCACCAGTACGGAGATTAAATGATTATTCAAATTTTGAG
CTCAATTTCAATGCTGACAAATGCGCTGCAAAAATGATGTATAACTTAAT
GTTGGAAAGTGGGGTGGAAGCGAAATACGATATCGAGAATTTATTGACTG
TTGTACAGTTCAGTGAGTACGAAGGAATGGATTTCACAGTTGCTGGTAAA
GTCGAGGcggaaaaaattacaaatgcAGCTTTTAAGAAAGCTATGAATCC
TTCTAATGAGGAACTCATAAAAGATGTCGAGAAGATTGATATGTCTTTGT
TCTATGTCTTGGATCAAGTACTTACTAATGAAAAGgattactttaattag
tagaggcttNATTGATATGTCTTTGTTCTATGTCTTGGATCAAGTACTTA
CTAATGAAAAGGATTGGGCATTCTTTGCAGATTCTAGTCTCACTAGTGAT
GAAGTTTTCAACAAGTTCGAAATTCAATCGAAACTCTACCTCGAGCGAAC
CAACCTCATTCTAAGTGGACGAGATATGGATGTTTATAGTGCTGATAAAT
TGACCGCCTATCTTGATCTTATGCATAAATTGCCTGGTGTTCTAGCATCA
GGTAAGGTGATAGAGAACGTCAAGATTGCAGACAAGATTGTGAGTGTGTA
TGCAgcaaatatcaatatttttcattaCGGAAGATCTTTGGAACCGATGG
TTGTCAAAGAGCTACAAACGCGCGGAGCTTCCTATGCCATTTTGATGAAC
GACCCCACAAGAAATGCTCAGACAGGCGCCTTGTCTTATTATTNTGGAGC
TTCGTACGCCATTTTGATGAACGACCCCACAAGAAATGCTAAGACGGGCG
CCTTGTCTTATTATTTCTCCTTACGAAGGGTGGATGGTGCGTTTAGCGCC
CGTGACTTAGCATTCTACCTGTTGGATATCACTGGAAGTAAAATTGGTGG
CGGTCATCCTTGGGCGTCGGGCGTAACCTTGAATAAAGATCAATACCAGA
AATATTTGAACGATTTCTTAAATCAACAGGATTGCCAGATTATCATATCG
CAGTGAAGcgaaatgttcaaaattttgaagtttttttaatggtatttaaa
aattgaattggacatataaatttttaataaattgCTTTTgtctataaaat
attttttttgaattataaAATGTACTCGATGTATTTAATCATAAATGAAT
ATTTAACTTTCTTG
Run BLAST on NCBI

protein sequence of TCONS_00072076-protein

>TCONS_00072076-protein ID=TCONS_00072076-protein|Name=TCONS_00072076-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
MSRRLICLCSMSWIKYLLMKRITLISRGXIDMSLFYVLDQVLTNEKDWAF
FADSSLTSDEVFNKFEIQSKLYLERTNLILSGRDMDVYSADKLTAYLDLM
HKLPGVLASGKVIENVKIADKIVSVYAANINIFHYGRSLEPMVVKELQTR
GASYAILMNDPTRNAQTGALSYYXGASYAILMNDPTRNAKTGALSYYFSL
RRVDGAFSARDLAFYLLDITGSKIGGGHPWASGVTLNKDQYQKYLNDFLN
QQDCQIIISQ
Run BLAST on NCBI

transcript from alignment at scaffold_70:123855..128907-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072076 ID=TCONS_00072076|Name=TCONS_00072076|organism=Clytia hemisphaerica|type=transcript|length=5053bp|location=Sequence derived from alignment at scaffold_70:123855..128907- (Clytia hemisphaerica)
CGATAAACAGTTTAAGTTGAAAAGGTAAGATAAAATGATAGCTTGATAAT
AATTTTCCCAAAACTACAATCAGCGCCTAAATATATTGGCAATTTTGGGA
ATTTCAACGTTTTTCAGAATTTAAAGGTCGGGCGAGAATTGCAGTTTCAA
TACTTCCACTTTGCTTCATTGGATTTTTTGGGAGATGTTGGGTGGCTTCC
AGGCTGTACTCTCAGCCTTATTGGAACATTTTTCAGCTTTTAGATCCTGA
GTTCCTAAGGTCCTAAGTCTTAAGTCCAATGTTAAAACTCAACCAGTTAT
ACTTTAAAGCACTTAAAAATCACTTGCGGTTTTAAGTTTTGAGGGAATTC
CCCTTTTGGGGCAAATATTTCGGCGACGATTGTAGACCCTGATATCAAGT
AGGATTTTTCTATCGTTTAGTTTACAAAAAACATACTCCAGGATCCAGTA
ATTTCATTGTCTACACGTTTTTTATAAGAATATCCAAAATCTTTGAAGCC
ATCAGATGTTCTTAACTTTTTTTAGCCTAAAAATGTTCTTAACATGCTCT
TATTTTCACCATTTTTTGAGAAGTTTTGTCTATTATTTTAAAAAAATTGG
GTGTATTAGAGTCAACATTTTTGTCATCGAAGCCTTATGTTCTTATATAG
TTTGTTCTTATTAAAAAATCGTCCATCTTACTTGTTTTGCGTCTGAAGAC
AAATCACGCTTTTACTCGAAATTTGTATGTGCGTGTTACATGACATTTAT
TTCTGATTGGCTCGAATTTATTGACACTAATAAAGTTATCAGCTGTAAGT
TGTAAAGCAAATAACCAGGAAATAAAATCACGTGAACTTTTTCGAGTAAT
CACATGTTTTGACTGCACTGATATAATTTTGCAACCCATGTAAACCCATT
CACAGTAAGGTTTTTTAGTTGCTTTAAATTATTTAAAGATAACTAAAAAA
ATTTTCCCTTAGGAAAGTCCCGTTTCATTGAAAGCAAGAGAGTATTTGTC
AATAAGAATTATTTTAGCATCTGAGAGGTGATAGAATTTTTAAAATGTTT
TGACGTTGTGAATTCTTTCTGTGTCGCGAAAATACCGGTATAGAGAAATT
AAGAAAATCAGAATATCTAAACTATTTTCTTTTATTTTGTTTGCTAGCTT
GAAAATATTTCCATTAAAATACGCAAAAAATAGTCGCAACGAGTTTTTTT
GAAGTTTCTTAAAACCACCATTAAACTTTTTTCTTATGCCGGAGAAATCT
CAAATTGATTCAAATCTTTCCAAAAGTAATTTTTATGCAGCAACAAAATA
CTTGCATTTTTGTAAAATCCTGTACCCTTTCTCTAATTAATTCATAACGT
GTAGTGGTAAACCGTTTGACATATAACAAGCATTTCAGAGGATGAGTCTA
CACGGGGTACCACGCTATCTGTAAAACGGGGAAATATCTTGATTATTGCC
TAAAAACTCAACGCCTTGACCCTTTTTTGGTTAAATACTAACAAAAATCT
GACTTTGGGTTGCACATTATTTTATAAGCAACTCCATTTTTCGAGTCAGG
GCTGGGGTTGCTTGGCATTCTAGAAAATTTGAAAATTTTGCTGAAAATTT
GCTTTGACCACCCCTGATATTATTGATTGGGTCAATGGCTATTGTTTGTC
ATGCTTAAAAATATAGTGAAGAAAAAAAGTTTGGCTAATTTTAGGGATGG
AGCCTTAGCAACGTTGGTCACTTATTAAATAAATTTTAGTTTGATGATTA
CTTTTTCTCTGATTACTGGTCATTCAGAGGAAAGAATAAAATTCCCTTTC
AACTTTAAAAATATATGCATATACCTGTGGCTTGATATTACTTGATATAT
GAGTTTTAGTTCTTCGAAATTCTTTTAAAAACATCGGAACCGTCGTTCAA
AGAACTCTTTCCCTAAAAGAATCTTGGAATACAAGTGTTTTTTATAAGAA
CATAAATTTCCTTTCAACCTTGAAAATATACAAATACTTATGGCGTGATA
TTACGTCATCGCCTTTGTGTTGCTGACTCACATCAGAGGGGATTTACAAA
TCGTGATGTGAGCTATTCAAGACTTGAATTCTATTATTGTCTTTTTATTG
TTCTGAAGTAGGAAATAATTAATTTTTGAAATATCAAAAATGGATATGAG
AAGGTTGTATAATGTTGGAGGGAGACTGTTAACTTCCATGTGAGGAATTC
TTGATAAAATTTTGAGCACCTCCTCAGATCTGCTACATAAATTTTAGTCA
AACCGAAAATTCTCTTATCAAGGAAAACAGAAATATAACATTCATCATTA
AAAGGCCTGGGTTCGAGTTATGTTTAATATTGCGTGACATAATCTTAAGG
TGACGTACAGGACGAAGGATAGAAAAAAATCACAAAAGCAAAAGAATTAC
AAACAATTAAATCATAAGGAGCTTCAAACAATGATTTGTTTTTGTAACAT
GTTAACAGGAAATTCTAATACATTTAAATTCTAAGAAGAGAGCCGGTAGA
ACACATTAAACATTCATTGAACGTTGAATGGATGTCCCGGACGTTGGAGA
GACGTTGACATGATGTTTGATTTCAGACAGGTTTTCAGGGGACTGTACCC
TCATACTGGTATTTTTTTATCGGTCGAAAAAAGAAAAAGATTTTTTTCCA
ACTCTCCCCATTCTTCCAACCTGTTTGGACCTTGCATTTGTAAGAAACGA
TTCTGATTGAGCAATATCAAATTCTTAATAGAATAGAATAGGAACAATAG
AATATAATTGAATAGGAACAATAAGAACAATGGAATGAAATAGAATAGAA
TAGCAACACAATAGAAAATTTACAAATGCTGCTCAGTTAAGTACCGTCCT
GCTAGCTCTTGTAGGTGATTGAACGATAAACAAACATTTGGACTTTCAAT
TTTATCTTTCTTTGTTTATTTTATGTCAAAAGCATCAAGCATCGAGGGAA
TTTCTAAAATGAATTTCCCATTTCAAGTTGATGATGTATAAAAACACGAA
CTTTATTTACAACTCAAACATTAACCATTTGGACACACCACAGAGTGTAG
AAAACTAAGAGCATGAAATCTGACCTAAAGAAATGGGATGAGATTGAGTT
TTTACAAGAGACTTCACTAATTGGTTATTTGAAGTAATAGAGATGACGCG
TTCTTTAGAAAAAGTAACAAAATTGTTTTATTACAGGTTAACGACCAACC
AAATCAAACGAGAGCTTGTAAAAACTCCAGCTTGTCCCAAAGAAATTTTG
CTCGTTTTTTTATCACATAGTTATTACAGCTTCTATGATGATTTTTAGAT
GCTGTTAAAAAACTTTATTCAAAACCTAAGTCTGGCTTTAGTGAAGGATG
CAGGGAGTTCGTAATAACCTTCCGTACCATACCAATTCTATATGGCTCCT
GATTTTAAGACTTAGAATATATTCTGCAGTTTAATAACATGTAATTTTCG
TTTTTTCTTTTAGTTGAAAGCATCAAAAGGACATCCAAATCTGGGGAATA
CCAACAATAACCAATACAGCATGGCACCAACACCTCTTACAACCATTATA
GTCTTTCATTCTTATCCACAAAAACCTTGCATAGATGGGCTGATGGCTGC
AATCATTGCTACATGGATTTACCAAAGCAGATCATCTAAAGTGCGCCTTG
TACCTTACTCCAGAACTAAAAAATCCTTTGACAGGCTGAAACAAACAGTC
GAGGAGACTGATGTTATGGGAGATTTTGGCAGACAACAGATTGTGTATGT
TGATTGTACACCAGATCTGGAGGAGGAGATAGAGTTCCTGGAGAAGATTG
TTGATAAGATTCCGATCACGGTTTACGATCATCACCAGATGCGAGATGAT
GCACCAGTACGGAGATTAAATGATTATTCAAATTTTGAGCTCAATTTCAA
TGCTGACAAATGCGCTGCAAAAATGATGTATAACTTAATGTTGGAAAGTG
GGGTGGAAGCGAAATACGATATCGAGAATTTATTGACTGTTGTACAGTTC
AGTGAGTACGAAGGAATGGATTTCACAGTTGCTGGTAAAGTCGAGGCGGA
AAAAATTACAAATGCAGCTTTTAAGAAAGCTATGAATCCTTCTAATGAGG
AACTCATAAAAGATGTCGAGAAGATTGATATGTCTTTGTTCTATGTCTTG
GATCAAGTACTTACTAATGAAAAGGATTACTTTAATTAGTAGAGGCTTNA
TTGATATGTCTTTGTTCTATGTCTTGGATCAAGTACTTACTAATGAAAAG
GATTGGGCATTCTTTGCAGATTCTAGTCTCACTAGTGATGAAGTTTTCAA
CAAGTTCGAAATTCAATCGAAACTCTACCTCGAGCGAACCAACCTCATTC
TAAGTGGACGAGATATGGATGTTTATAGTGCTGATAAATTGACCGCCTAT
CTTGATCTTATGCATAAATTGCCTGGTGTTCTAGCATCAGGTAAGGTGAT
AGAGAACGTCAAGATTGCAGACAAGATTGTGAGTGTGTATGCAGCAAATA
TCAATATTTTTCATTACGGAAGATCTTTGGAACCGATGGTTGTCAAAGAG
CTACAAACGCGCGGAGCTTCCTATGCCATTTTGATGAACGACCCCACAAG
AAATGCTCAGACAGGCGCCTTGTCTTATTATTNTGGAGCTTCGTACGCCA
TTTTGATGAACGACCCCACAAGAAATGCTAAGACGGGCGCCTTGTCTTAT
TATTTCTCCTTACGAAGGGTGGATGGTGCGTTTAGCGCCCGTGACTTAGC
ATTCTACCTGTTGGATATCACTGGAAGTAAAATTGGTGGCGGTCATCCTT
GGGCGTCGGGCGTAACCTTGAATAAAGATCAATACCAGAAATATTTGAAC
GATTTCTTAAATCAACAGGATTGCCAGATTATCATATCGCAGTGAAGCGA
AATGTTCAAAATTTTGAAGTTTTTTTAATGGTATTTAAAAATTGAATTGG
ACATATAAATTTTTAATAAATTGCTTTTGTCTATAAAATATTTTTTTTGA
ATTATAAAATGTACTCGATGTATTTAATCATAAATGAATATTTAACTTTC
TTG

Coding sequence (CDS) from alignment at scaffold_70:123855..128907-

>TCONS_00072076 ID=TCONS_00072076|Name=TCONS_00072076|organism=Clytia hemisphaerica|type=CDS|length=783bp|location=Sequence derived from alignment at scaffold_70:123855..128907- (Clytia hemisphaerica)
ATGTCGAGAAGATTGATATGTCTTTGTTCTATGTCTTGGATCAAGTACTT
ACTAATGAAAAGGATTACTTTAATTAGTAGAGGCTTNATTGATATGTCTT
TGTTCTATGTCTTGGATCAAGTACTTACTAATGAAAAGGATTGGGCATTC
TTTGCAGATTCTAGTCTCACTAGTGATGAAGTTTTCAACAAGTTCGAAAT
TCAATCGAAACTCTACCTCGAGCGAACCAACCTCATTCTAAGTGGACGAG
ATATGGATGTTTATAGTGCTGATAAATTGACCGCCTATCTTGATCTTATG
CATAAATTGCCTGGTGTTCTAGCATCAGGTAAGGTGATAGAGAACGTCAA
GATTGCAGACAAGATTGTGAGTGTGTATGCAGCAAATATCAATATTTTTC
ATTACGGAAGATCTTTGGAACCGATGGTTGTCAAAGAGCTACAAACGCGC
GGAGCTTCCTATGCCATTTTGATGAACGACCCCACAAGAAATGCTCAGAC
AGGCGCCTTGTCTTATTATTNTGGAGCTTCGTACGCCATTTTGATGAACG
ACCCCACAAGAAATGCTAAGACGGGCGCCTTGTCTTATTATTTCTCCTTA
CGAAGGGTGGATGGTGCGTTTAGCGCCCGTGACTTAGCATTCTACCTGTT
GGATATCACTGGAAGTAAAATTGGTGGCGGTCATCCTTGGGCGTCGGGCG
TAACCTTGAATAAAGATCAATACCAGAAATATTTGAACGATTTCTTAAAT
CAACAGGATTGCCAGATTATCATATCGCAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044764XLOC_044764Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072076-proteinTCONS_00072076-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072076-exon-scaffold_70-1575043694:128884..128907TCONS_00072076-exon-scaffold_70-1575043694:128884..128907Clytia hemisphaericaexon
TCONS_00072076-exon-scaffold_70-1575043694:123855..125444TCONS_00072076-exon-scaffold_70-1575043694:123855..125444Clytia hemisphaericaexon
TCONS_00072076-exon-scaffold_70-1510915933:128884..128907TCONS_00072076-exon-scaffold_70-1510915933:128884..128907Clytia hemisphaericaexon
TCONS_00072076-exon-scaffold_70-1510915933:123855..125444TCONS_00072076-exon-scaffold_70-1510915933:123855..125444Clytia hemisphaericaexon
TCONS_00072076-exon-scaffold_70-1491911889:128884..128907TCONS_00072076-exon-scaffold_70-1491911889:128884..128907Clytia hemisphaericaexon
TCONS_00072076-exon-scaffold_70-1491911889:123855..125444TCONS_00072076-exon-scaffold_70-1491911889:123855..125444Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_70supercontigscaffold_70:123855..128907 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.90232	8.61394	4.56341	1.37349	0.56315	0.211723	0.734943	0	2.25529	8.88612	0.660824	0.586973	2.43903	1.31271	5.32013	7.11216	2.84355	4.89881	5.12133	5.26719	1.3071	0.971938	6.02735	4.39399	2.18807	0.145543	2.42743	2.17759	16.3287	14.036
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072076 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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