TCONS_00072075 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072075
Unique NameTCONS_00072075
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1285

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072075 ID=TCONS_00072075|Name=TCONS_00072075|organism=Clytia hemisphaerica|type=transcript|length=1285bp
CAAATATTCCAATGCATCAATAACATACCGAAATGTCATGCAGGTGGCTG
TATAACCAAATGGCTGGTCGagagtaaaattttaaaatctacaAGTTCTA
AGTATCTTGAAATTGACAATAATAAAGCATTGCTCGTTAGAGCACCTCTC
TCACGGACAAGGCAAAAAGGTCCATTTGCGTGTGTTATTGAAAAAGATGG
AAAAGTACTTGGCACAGCAGTTGGATATTTGAAATTCGTTACGATTCCCA
AAAAGTACACAGAACGTGACCCTCCTGATGGAAGCACAATTGAGGATGGA
GGTGAAAGAAAACTTGACATTGCAGGAGCATTCAAAGACGGGAAGAATGC
AGCCTTGATTctcatcattttcattttgttcttcGTATCTACTGCCGTCT
GGGGACTTATCATTTACTTCAAAGTTAACAGCCCCTCGCCAACAACAAAA
GACGGTTACAAACTGCTTGAAGAGCAAAGAAGCGAGGAGGGAGAATATGA
AGAAGTGGAAGATGAATACGAAGAAGCAGACAAAGGGAAGAACAAAgcga
agaaagaagaaaagaaagaaaagaagagcGAAGTGAAGAAAGGAGAGAAG
AGAAAAgaagagaagaagaaagaagacaGCAGTAAGAAGAAGagagaaga
aaagaagaagaaacagGTGGACAGTGATCCGTATTATGACGAACCGTATG
AAGAAGATTATGATACTGTCAAACAACGAAACGCTTCCATCAATTCGACA
TACAACGAGGTCGCAGAGAAATCTAAGAAATCTTCATCTTCAAAGAAAGG
GGCGTCAAGAGCACCGCCCTCCAACGATGATTATGATGATGTTTTTGAGG
GAGGGAGTGATCTCTATGATGACGTCATGGTTCAAGCACAAGCACCACCA
GTCAAAAAGCCACATCGTATCCCAGGACATCGTATCCCGGGTTTACCCCC
GGCGTCGCTGATTAAAGAGTTGTCAAGGATACCGGTTAACCCACCACAAG
GGCGTGACGCTAAACTACACCTTATTAGTCGAAATAATTCTTCCAAACAT
CACAGATCACGGTCGAAAAGTCGAAACTCAGATGATTCGGAAATAGCTGG
AATGAGTGCAAAACATATTCAAAAGAGTTCTTCAATTCGGTCACATAGAG
GTCATAGCAGCCGCTCAAGTAGTAAGAGATAGTTagcctaaaaataaaaa
ttgatagaTTGTACTTAGTTATTAAATTTTATAaccattcaaaaaaatat
actaTTTTTTTGTAGAATATAGATTTATACCAAGA
Run BLAST on NCBI

transcript from alignment at scaffold_70:117325..121846-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072075 ID=TCONS_00072075|Name=TCONS_00072075|organism=Clytia hemisphaerica|type=transcript|length=4522bp|location=Sequence derived from alignment at scaffold_70:117325..121846- (Clytia hemisphaerica)
CAAATATTCCAATGCATCAATAACATACCGAAATGTCATGCAGGTGGCTG
TATAACCAAATGGCTGGTCGAGAGTAAAATTTTAAAATCTACAAGTTCTA
AGTATCTTGAAATTGACAATAATAAAGCATTGCTCGTTAGAGCACCTCTC
TCACGGACAAGGCAAAAAGGTCCATTTGCGTGTGTTATTGAAAAAGATGG
AAAAGTACTTGGCACAGCAGTTGGATATTTGAAATTCGTTAGTAAGTTGT
TTTCANAATGGAAAAGTACTTGGCACAGCAACTGGATATTTGAAATTCGT
TAGTAAGTTGTTTTCATTTTTATTGATTTGAAGTGTTTTTATCGAGGCTG
ATCGTGTCTCCTTTCTACTAATATATTCTCAAATCGGACTAAAGAGAGAC
TTTAAGAATCTCTGTGTCACTGTAAATTCCAGCTTAAGAGATATCCTGTA
GGAAATATCAAGCAAACAGTGGTTATTACCCTAAAGAAGGGACTATTTTC
CGGCGGAATTACGTTTTTGTTCGCGTCAACATGACTAAACAAGAATAATG
GAATATCTGTACAAAATAAATAACGTCAAGTTTGACATTCATACCTCTTT
TTTACGAAAATATCCCCCTAAATAATTCGGACTTTTATACTATTCGAGGA
CAACAGTTCATTGCTGTTGGTAACCATTTTGTTGCTATGGAAACGTAGAA
GGGGTTGATAGAATTGCGCACGCACGCTGAATCTAAAAATAGATTTTATC
TTTGACATAATCATTACTCTCGATGTGTTTGTACGAGTTCCAATCCCATC
AACCTTTGCGTTAATCTCTTTTGCACGTTAATTGCATCGTTTGACAAAAG
ATGTATAACAGCTTGCAAGTATCTTTAATTGAGCCGCGTTGAATTGTGGG
ATTGCAACTCGTACAAATGTCAAAAAAAGTGAAAAGTAATAATTATGACG
TATGCGTTGCGGAGCGCTATTGAGATAAGTCGGAAGTTTAAGAAGAATTT
TGATGGTTGTCGAAGCTTATTTATGTAAGTCTGGTCAATTATCAAATGTC
TTCCAACTTTCGAGTCTTACAAATAATGTCTACAATGTAGCCGGTAACAC
ACATGCGTTATTTGTCGTTCTTTTAAACCACATGCAGTTAATTCCCGTGA
TAAACGATTAGAAATGAATCGCTAGGGGTGTACATTCACTTTCGGTCGGG
GTTGTGGATGGCGAAATATGTCGTTTTTTATGAAATTTGTCGTTCTTTTT
GTCTATTTTTAGTAATTCAGGATTCTTTAGATAAGCCCCAATTCAAAGTT
TTTGTTAAACACTCATTAAATTTCTACTAAATTAAATTTTAAGCGATTCC
CAAAAAGTACACAGAACGTGACCCTCCTGATGGAAGCACAATTGAGGATG
GAGGTGAAAGAAAACTTGGTAAGAATTATTTTTCTTGGTGCTTTTCGTGC
TCCATTTAACATCCATATTAATTCTACAAGAAGGTCAATTACTGGAGTAA
AGAAACAGCTTTTCCAGATTACGCAATAAAACTCATACCTTATCGGCCAA
AACTTAGTCGGCCCTTAGTGACTAAATTTTGGCTTGGTGACTAAAATTAG
GGCCAACTAATAATTAAGGTCGACTAAGTTTTGGCCGATAGCGTAATATA
CCATCCAAATAAAGACGTCGTTTATGTTAGCCCTGGGATCAATTCTCACT
CACTCAATCAAATATTACTCTTTCTTTTCTAGACATTGCAGGAGCATTCA
AAGACGGGAAGAATGCAGCCTTGATTCTCATCATTTTCATTTTGTTCTTC
GTATCTACTGCCGTCTGGGGACTTATCATTTACTTCAAAGTTAACAGCCC
CTCGCCAACGTAAGTCTCTTTGTAAATTGTTAAATAAATGACCAAAACAA
TGACAAGAATCCCCAGAGTTGGCAAAAGATCTGAACCAACACCACCAACT
CAAATATCTTGAAGCTATCGTGTTAAAAATCCAAAAAGCAGTCACGGACA
TTCTAAATAAAAGATTATATGGTTTAGTGAACTCTTACCATCTTTTAACT
ACCTTATGTCCGTTTCCAGCAATTTATGTTGAATAGTTTATTCGAGGGTC
GGGAAAGTCTTATTAATTTGTAGTATGTCTTATGGAGAAAGAATCGGTGA
CTCTATTCAACATAAGCTAATAGACGATATCGGCTTTCCGAATTTTCCCC
GAATGATTACCCATGATGCATTGGTATCGTCATCAATATCGTCCGTGAAT
TTTTTTTGCACAATGCATCATGGGTAATCATTCGGGAAGAATTCGGTAAA
GCCGATATCGTCTATTCCCAATACACGGGCTGCAAAATTGTATCAGTGCA
GTCAAAACATGTGATTACTCGAAAAAGTTCACGTGATTTTATTCCCTTGT
TTTACTTGCTTTACAACTTACAGCTAATAACAGTGTCAATAAATTCGAAC
CAATCAGAAATAAATGTGATTTGTCTTCAGACTTTAATTTTGCAACCTGT
GTATTGTTTTCTTACAGAACAAAAGACGGTTACAAACTGCTTGAAGAGCA
AAGAAGCGAGGAGGGAGAATATGAAGAAGTGGAAGATGAATACGAAGAAG
CAGACAAAGGGAAGAACAAAGCGAAGAAAGAAGAAAAGAAAGAAAAGAAG
AGCGAAGTGAAGAAAGGAGAGAAGAGAAAAGAAGAGAAGAAGAAAGAAGA
CAGCAGTAAGAAGAAGAGAGAAGAAAAGAAGAAGAAACAGGTGGACAGTG
ATCCGTATTATGACGAACCGTATGAAGAAGATTATGATACTGTCAAACAA
CGAAACGCGTAAGTGTGTTTTTCAGCAACGGAGACGTTAAGGTTCTAATT
TGATTAGATCCTGACCAGCTGATACTGTGACCCCTGATTCTGAAACCTAC
TATGGCGCGCGGAAGCGCCAATAAATTTTATCTTGTTTAAAACGATACTA
TCTTTTTTTTAAACATACTATCTTTTTAAACCAATACTATCTTCGTTTAA
AAACATACTATCTCAATTAAAAAGAAACTTACGGTTTGAAAAGCCGAGTC
AACAGTTTAACTAGTGAAAATGTCAAGTAAGGGTTTGTCTCTTTTACCCA
AATCATTAGGGGCTACGGTGGAGGGTGGGTACCTTGGGGGATAGTGACAC
ACAGTGAACGCAATAGCAGCGTTTCTCGGTATTCACATTTTCTTTGTCGT
TTGAAGGAGAGTAGAATACACATTATCCACTACGTTTTTAAACTGTTCCA
TTAGCTTGGCCTTTTTTCCTTCCTCCATTTTATTTTTGGTCTTTGTCAAG
AAACTGAGAAATCAGCTCTACTCCATATGCCTTTGGTGATCATCCACATG
TTATCGTAATGCGCATGCGCACCGTTGGAAATTGAATAAGCGAGACAAGA
AAGATTTATAACTCGGAATTTTTTACAATCAGTCAAATTAGTCGATCTTT
AACTCGATAACCGTAACTCGGCCTTATTGAAGAAAGAAGAAAAAAGTTTC
GATTTCGATTTTGGGTGTAAGTATCGGTTCAGATAGTTAGATAGTTTCAG
TTTAAATATGATAGTTTCTTTTTAAATGAGATAGTATGTTTTTAAACGAA
GGGAGTATTGTTTTAAAAAGATAGTATGTTTTAGACAAAGATAGTATTTA
TTGGCGCTTCCGCGCGCCATAACCTACAGCCTAACTGTCCGGCTACGGTG
CGCAAGGTTGTGGGTTCATCTCCCAGCCAGGTTATACCAAAGATTCCTAA
AATGGTACTTGATGCCTCTCTGCTTGATACTCAGCAATTAAGAGAAGGAT
CAAGTGTACGTGGAGCAATTCAGGGAGAAAGAGTGGCGCCCTCCCCTACC
TTCGGGTAGATATAGCTATCGAAAGGGGAGCCTTCAGGTCGACTCAAACT
ACGGTCGCAGACTACTACTAACTACCAAACACATGATAGTGATCTCAAAT
TTCAACTTTCGAACATTCTAGTTCCATCAATTCGACATACAACGAGGTCG
CAGAGAAATCTAAGAAATCTTCATCTTCAAAGAAAGGGGCGTCAAGAGCA
CCGCCCTCCAACGATGATTATGATGATGTTTTTGAGGGAGGGAGTGATCT
CTATGATGACGTCATGGTTCAAGCACAAGCACCACCAGTCAAAAAGCCAC
ATCGTATCCCAGGACATCGTATCCCGGGTTTACCCCCGGCGTCGCTGATT
AAAGAGTTGTCAAGGATACCGGTTAACCCACCACAAGGGCGTGACGCTAA
ACTACACCTTATTAGTCGAAATAATTCTTCCAAACATCACAGATCACGGT
CGAAAAGTCGAAACTCAGATGATTCGGAAATAGCTGGAATGAGTGCAAAA
CATATTCAAAAGAGTTCTTCAATTCGGTCACATAGAGGTCATAGCAGCCG
CTCAAGTAGTAAGAGATAGTTAGCCTAAAAATAAAAATTGATAGATTGTA
CTTAGTTATTAAATTTTATAACCATTCAAAAAAATATACTATTTTTTTGT
AGAATATAGATTTATACCAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044763XLOC_044763Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072075-exon-scaffold_70-1575043694:121606..121846TCONS_00072075-exon-scaffold_70-1575043694:121606..121846Clytia hemisphaericaexon
TCONS_00072075-exon-scaffold_70-1575043694:120429..120503TCONS_00072075-exon-scaffold_70-1575043694:120429..120503Clytia hemisphaericaexon
TCONS_00072075-exon-scaffold_70-1575043694:119988..120114TCONS_00072075-exon-scaffold_70-1575043694:119988..120114Clytia hemisphaericaexon
TCONS_00072075-exon-scaffold_70-1575043694:119039..119329TCONS_00072075-exon-scaffold_70-1575043694:119039..119329Clytia hemisphaericaexon
TCONS_00072075-exon-scaffold_70-1575043694:117325..117875TCONS_00072075-exon-scaffold_70-1575043694:117325..117875Clytia hemisphaericaexon
TCONS_00072075-exon-scaffold_70-1510915933:121606..121846TCONS_00072075-exon-scaffold_70-1510915933:121606..121846Clytia hemisphaericaexon
TCONS_00072075-exon-scaffold_70-1510915933:120429..120503TCONS_00072075-exon-scaffold_70-1510915933:120429..120503Clytia hemisphaericaexon
TCONS_00072075-exon-scaffold_70-1510915933:119988..120114TCONS_00072075-exon-scaffold_70-1510915933:119988..120114Clytia hemisphaericaexon
TCONS_00072075-exon-scaffold_70-1510915933:119039..119329TCONS_00072075-exon-scaffold_70-1510915933:119039..119329Clytia hemisphaericaexon
TCONS_00072075-exon-scaffold_70-1510915933:117325..117875TCONS_00072075-exon-scaffold_70-1510915933:117325..117875Clytia hemisphaericaexon
TCONS_00072075-exon-scaffold_70-1491911889:121606..121846TCONS_00072075-exon-scaffold_70-1491911889:121606..121846Clytia hemisphaericaexon
TCONS_00072075-exon-scaffold_70-1491911889:120429..120503TCONS_00072075-exon-scaffold_70-1491911889:120429..120503Clytia hemisphaericaexon
TCONS_00072075-exon-scaffold_70-1491911889:119988..120114TCONS_00072075-exon-scaffold_70-1491911889:119988..120114Clytia hemisphaericaexon
TCONS_00072075-exon-scaffold_70-1491911889:119039..119329TCONS_00072075-exon-scaffold_70-1491911889:119039..119329Clytia hemisphaericaexon
TCONS_00072075-exon-scaffold_70-1491911889:117325..117875TCONS_00072075-exon-scaffold_70-1491911889:117325..117875Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_70supercontigscaffold_70:117325..121846 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.127172	0.0396855	0.0833543	0.851702	0.0668099	0	0.323015	0.240636	0.0308682	0.0200921	0.346526	0.0632308	0	0	0	0.0466485	0	0	0.038468	0.261575	0.144488	0.176126	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072075 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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