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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072070 ID=TCONS_00072070|Name=TCONS_00072070|organism=Clytia hemisphaerica|type=transcript|length=1778bpRun BLAST on NCBI protein sequence of TCONS_00072070-protein >TCONS_00072070-protein ID=TCONS_00072070-protein|Name=TCONS_00072070-protein|organism=Clytia hemisphaerica|type=polypeptide|length=480bp INKIMTREAGAQSPVDPSVDELKTKRGRKPSQAKLAMLESKRLFADKRRFRun BLAST on NCBI transcript from alignment at scaffold_70:74996..87512- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072070 ID=TCONS_00072070|Name=TCONS_00072070|organism=Clytia hemisphaerica|type=transcript|length=12517bp|location=Sequence derived from alignment at scaffold_70:74996..87512- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_70:74996..87512- >TCONS_00072070 ID=TCONS_00072070|Name=TCONS_00072070|organism=Clytia hemisphaerica|type=CDS|length=18759bp|location=Sequence derived from alignment at scaffold_70:74996..87512- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00072070 vs. Swiss-Prot (Human)
Match: SDS3 (Sin3 histone deacetylase corepressor complex component SDS3 OS=Homo sapiens GN=SUDS3 PE=1 SV=2) HSP 1 Score: 182.956 bits (463), Expect = 8.197e-52 Identity = 117/278 (42.09%), Postives = 177/278 (63.67%), Query Frame = 3
Query: 609 EEEISEMKEQMYQQXXXXXXXXXXXXXRRTLPEFKSKFEELKREKEDWIRTAYAYKSXXXXXXXXXXXXXKKQAKEDFEQKKQELKEHLIAELNEKKRLIENEKTTLELSGGIGPILPLEVKPTVTRKLRRRGPEPLPVAEKKRKTNSTPLNLLLNEEQILADLKKIGKHHKPH--SSSTSEEKTPKPSKNADKCDPTTFP-DGTDAKIKDEKLFYNKEWYQSGDPVYLNSRDGERFHAQIHSITSTREIWIKKLTEGTRLKIYVGHLQRGKYAIERR 1433
EE+ EMKEQMYQ K+ LK +L++L+ TL E++ + ++L ++ ++ IR A + E +++R Y +EKK A ++FE KK ELKE+LIAEL EKK++IENEK T+EL+G +EVKP +TRKLRRR +P+P+ +K+RK LN LL +EQI+ DL+ + K P +S +S E P P P +A+I+D KL+Y+K WY +YL S+D ++ I S+ + EIW++K ++ T+++IY+G LQRG + I RR
Sbjct: 62 EEDYVEMKEQMYQDKLASLKRQLQQLQEGTLQEYQKRMKKLDQQYKERIRNAELFLQLETEQVERNYIKEKKAAVKEFEDKKVELKENLIAELEEKKKMIENEKLTMELTGD-----SMEVKPIMTRKLRRRPNDPVPIPDKRRKPAPAQLNYLLTDEQIMEDLRTLNKLKSPKRPASPSSPEHLP--------ATPAESPAQRFEARIEDGKLYYDKRWYHKSQAIYLESKDNQKLSCVISSVGAN-EIWVRKTSDSTKMRIYLGQLQRGLFVIRRR 325 The following BLAST results are available for this feature:
BLAST of TCONS_00072070 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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