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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072068 ID=TCONS_00072068|Name=TCONS_00072068|organism=Clytia hemisphaerica|type=transcript|length=772bp
gaaaaaaattaagttagaATTATTTATAAAAGGATATTCATCACACTGTT
TTCACACAAAATGCGAATGCGAGTTCCAAGaggaCAAACTGTCCCCAACC
AACAGCAGCAAGCACAAGGAACACAGCCTGTTGCTAACAACCTACTCAAT
GTTTCAGGTGGTAACAACTTACAACAGAACGTGCAACAGATTCAACAACA
GTTACAACAGAACGCCAACAAcgtacaacaacaacaaaacaacacTATCA
AACAAGAACAACAACAAACCAACAAAGCACCTGATCAACCCAAAGCTCAA
CAAATTACTGGTGGAACCCTCTTCGCTAACAGTACTTTAAATCAAGTAGC
AGGTATGAATAATGGGCAAGCAGTACAGGTCACCGTCAAAAACGGACAAA
TCGTCAACCAGCAACTACAACAGCGTCAAAACAACACCATGGTCCAACAA
TCTCAAACCAACAACACGGCAACAAACCCTCAACAACAATTGCAATTTCA
GATcgcacaacaacaacaaaacaaccaaCAACAACAGAGCAATACACAAC
AAAATATTCAACAATTGTCTAATTTCATCACAAATGCTAATAACCCTCAA
CTGGTCATGGCGGTGAGTAGAACTTTTGATAAGAAATCTGCGaccacagt
cggaggcgacccgaaggctcctctttcgatagctatctacccaagGGGAG
GGGAatgcgccactctttctccctggattgctccacttacccttgatcct
tctcttaattgctgagcatcaa Run BLAST on NCBI transcript from alignment at scaffold_70:214254..219245+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072068 ID=TCONS_00072068|Name=TCONS_00072068|organism=Clytia hemisphaerica|type=transcript|length=4992bp|location=Sequence derived from alignment at scaffold_70:214254..219245+ (Clytia hemisphaerica)
gaaaaaaattaagttagaATTATTTATAAAAGGATATTCATCACACTGTT
TTCACACAAAATGCGAATGCGAGTTCCAAGaggtaagttttttattttct
ccattATATTTATCCTATTATTGAACCAGCCATAGAAAGACCCTTTTTCC
ACTTGTTCAATCTCAGATTTTGTCGTCGGATTTAGCTTGGTTGGTTTCAA
ATGCGATTGACTAACTTCTTTTTAAAGTCGACtgtcgctaattcgaactc
gaacggagaatcttatttgttcgaattttagaaagtattttaagaaggTT
CTCCTTGAAGGGGATACTGGAAAcaagttcaaattatagaaagcttCGAA
TAATAATAGAATTATCAAGAATTTACTCTATTATAATCGAAGGttgaaat
attgaaagtcattctcaaaaaaaattgagtttctgcattgggctcttcca
gaaaagaattttaatatggggggtggagaatatcacattttttggaaatt
taccccttggactgtgacttttgacccctcCCCAGACAACAGATCTAACC
CCCAGACAAATACcagttgacccccggacattcaaaatcacccctaattA
GAGCAAGTTTGCTctcaaaacaaggcaaattttgcagattttcactaccc
ccggacaaaatatccaatttatcctccacccccatgcacaaaaattttct
ggattaTTCGATGTCAAAATAAAAGTAGCACATGCGCATTGCTTGCTGCG
ATAAATTTTGAATTGTGCTGCACAATTCCCAAATTATAAACTTcgatatt
ttcttttaaaactgTTACATTAGGCTCTCTAGAAGGGAGCAgggaatttt
ctttcttgaaattttgcctACTTATTTAGAGAGtaaattcaacatttttg
acTGGTCGTTGTAATTGGTTTTTGTCATCGGTTTTTATCGGCAGTTCCGT
CGGTTTTTGATCAACGTTACAcgctgtttttataagaatggtgtaaatcc
atttcatcatggatattcttaacttttttgggaaaaaaatcatcctaaaa
tattcttacaccATTCTTAATTTAGGAACCTAactcagactagatttaac
atttagtacatacgtctcaagcataaaatggcattcttagcttgagtagc
aaaattccatgatgatattcttagcattattctcaattttttggccattt
tcatcatggacattcttataaagtgtattcttataaaaaagcgtgtatta
gcCTCATCAAAGCACAAAATATTCACGAAATATTGTCTACGGCTCCGTTT
TCTGGATTTTCTTTGCTATTCATAGGTCACTTGACCTTACAATGATTGCT
ATGTCTTGTGATCATTACTTTCCTCTACTGCGTACTTCAGTTTTCGAAAG
TGGGATGTGCCCTCTGTTAGTTGATTGTTTAGGATTTTCTTTCCATGAGG
TCAAATCCCTTCAATGACCTGTCTGCACTTGATGGCACACCGAATATAGA
TTGCTTTCTCTATAGTCACTTTCTTTAATGAAATCTGATATCTCTTGCTA
AAAGTTTGATTTAATTTGTAATCTTCTTGACAGgctatctttttttataa
gaaaattgcTATGCCTGAGTCATTCTTACGGTAATGGTCCAGGAACCATT
ATCAGTGCCTTTGATCTGTTAGCAGTTGGCATACCCCCGTGGCTGAGCTT
TTTTACTACCACTGACATCTCCGTTTTAGCTTCTAAAAATCACAACATTT
GATTTAAGAACCAGTCAAATAGAATTTAAGAATCAAATCTTATAAACACG
ACAAACAAACAAGCTTTTTAAATGGATCCCTAGGAATTTGACACCACTAT
TTATTTAAcctgaatatttttttctctcacTACTAATTACTATCCCGCAA
CATTTTTTGTCGTCAATTCAAAGGTCAAGGTCATCTCCATTTAAATACAg
atggaaaacttttttctgaaGGGTCCTTGTGCattccatttttattttat
aggcCCGTTTAGTAGATAGGGTGTTGTTTGAGATATTGATATGACTTTGG
TTtacaatcatttttgtttttaataggCTTTGGAGGTGCTTTCAAGGTTT
TTGTGTTGTCGGACAATGAGCTCGATCTAATTAAAACCTCTTTGGCTCTT
TTTACTGGgctaaatttgtgttttttgtacTTTCGAGGGCTCCAACACTA
CGATCCCTGCATTTGctaaaaacagccaaaataacGACCAATTTCATAAA
ATAACGACAAACTTCGCCGTCCACACCCACCCCTATGATTTGATCTTTTC
TTGTTTATTGTGAAGATTAACGACTGATGGTTTAACTTAAGGAACGTAAA
TTACGCATGTGTGTTATTGATGCAGGAACCGTCAGTCGAACTCGCTTATA
TTAGCTTATATTTGAATTCTTACATTAATGATGATATctaaatatctttc
ttttttcaggaCAAACTGTCCCCAACCAACAGCAGCAAGCACAAGGAACA
CAGCCTGTTGCTAACAACCTACTCAATGTTTCAGGTactgaaaaatttct
ttctttacacaaatcttcttaaaaaacagtgtcccaaaaaaacgacaaat
ttttaagcaaaatcctaAATATATGCGTATACTTAATTTCAGTTCCAAAA
ACCTTTCcaatcatcttgggaattgaatatcttttgatAGAAAAGAGAAT
TgtaatcttatttcaattattgTAAGACTAGTTTAGATattgagttttga
ggattttacttcaTGGTCATCAAAATTTGTCCGCGTTTTTCGGGAAACAC
TATATATGAAAAACTATGGATAAATTATCCATTTAAAAATCAACAGAACC
TCCCCTCTTTGCTGCAACCATAAAATTTCACCGAAGGCTAGGTAAGGGGA
ATCTTTGCTCTTTCCCAAACAAGACAAAGCGAATCCTTTAAAATGTGCAC
CGCATTTCGGATGGCGGATTGAATCtattactttctttgttttcttgtta
aacatttttcaaattttggtagTAAATGTTACTTCCAATCTAGCGTATGT
ATGAAAACCATGCGGGATGCGCAACTTATGTGGGAAAATAAGCAGCTTCC
CTCCCTCTTTGCTTTAACCACAAGATTCCAATTGGTTTCATGAACATGGC
GTGACGAGGCTTCAGTAAGAACTGCATTCTCATGATGCGATGGTCGTTAT
TTAACCTTTCAAAGGGCAATTAACGACAAATTGCACGAATCGGAGAAATA
TATTTCGTCCAGTATGAAATTACTTCTTCGATGTCAGCGATTTATTGAGA
TAATAGAATGTGAAAAGAATTCCATATTTTATgttattcatgacgtaata
atTCGGAAGCACTCACAAAAGACCGGGTGTTCGCCNAAAGAATTCCATAT
TTTATgttattcatgacgtaataatTCGGAAGCACTCACAAAAGACCGGG
TGTTCGCCATTAATTTTGAATTCGAACAATTAATCTAGTGGCAAACGACC
GGGTTATTTTGGGCGCTTCCGGGTTAAGGATTTTTCTGTCAGACTTTTGC
CTAAAACGAAATCTCGGAGGGTAAAGAAGTCTGGATATCTTAGTCAAGGA
AAGTTCTGGTCGATGGACAACTACCGTATCGCCCCTTTCTTGTTAACGGT
CCCAGCTCAAATTGACTGAGGAAAGATTAGTTAGCTTCTAGCAAATtaag
gccgctacccactcagcattttatagACGAAATATATCCTATATGTTATT
TTCCCTGATAAGATACTTAAGatacttttactttttcatcAAACCCTCTC
TCTATTTCTCCTTCAGGTGGTAACAACTTACAACAGAACGTGCAACAGAT
TCAACAACAGTTACAACAGAACGCCAACAAcgtacaacaacaacaaaaca
acacTATCAAACAAGAACAACAACAAACCAACAAAGCACCTGATCAACCC
AAAGCTCAACAAATTACTGGTGGAACCCTCTTCGCTAACAGTACTTTAAA
TCAAGGTAAACTGACTTGAAGGATATCATTTAACTTTTCCCCTTCCATTT
GCTTACATAGCACTTTTAAACAATTAAGAAAGAACAAATTTCTTCCACTC
TCGCGCCGCGCGGGCAATCTTACTGTTTGTGCTGCTTTTTCAGCATAGAG
GTGCTCCTTTCTATAGACATCAAAAAtaatatctttaatAGCTCGAATCT
TCATGCCATCGCTGATTTTTATTTCGGATTAAGCGTTACTGTGGTTTACC
GAGATGTTCCTTCATTCTCCCATTGACAAAAATGAGTGAAGTCAAAGGAA
AGAAAATGTGCGTTTTTGCTCTGTTAGCTATTTTGTTAATGTCCGCCTGT
TTTATCTGGCCCTTTTATTGAACttattcatgaaattttgactttatgaa
tttattttatgGAGACACCTAAATTTTTGCAAGTAGTGACAAATTTAagc
cagagaaaaaattgtttaaaatttgccactactggcaaaaaccggggtgt
tTCAGTAGAAAACTTTGCGTAATCTTGAATTGGGTATAATCTCTGTAGAT
ATTTATCTCTCTCTAGTAGCAGGTATGAATAATGGGCAAGCAGTACAGGT
CACCGTCAAAAACGGACAAATCGTCAACCAGCAACTACAACAGCGTCAAA
ACAACACCATGGTCCAACAATCTCAAACCAACAACACGGCAACAAACCCT
CAACAACAATTGCAATTTCAGATcgcacaacaacaacaaaacaaccaaCA
ACAACAGAGCAATACACAACAAAATATTCAACAATTGTCTAATTTCATCA
CAAATGCTAATAACCCTCAACTGGTCATGGCGGTGAGTAGAACTTTTGAT
AAGAAATCTGCGaccacagtcggaggcgacccgaaggctcctctttcgat
agctatctacccaagGGGAGGGGAatgcgccactctttctccctggattg
ctccacttacccttgatccttctcttaattgctgagcatcaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072068-exon-scaffold_70-1491911889:214254..214335 | TCONS_00072068-exon-scaffold_70-1491911889:214254..214335 | Clytia hemisphaerica | exon |
| TCONS_00072068-exon-scaffold_70-1510915933:214254..214335 | TCONS_00072068-exon-scaffold_70-1510915933:214254..214335 | Clytia hemisphaerica | exon |
| TCONS_00072068-exon-scaffold_70-1575043694:214254..214335 | TCONS_00072068-exon-scaffold_70-1575043694:214254..214335 | Clytia hemisphaerica | exon |
| TCONS_00072068-exon-scaffold_70-1491911889:216713..216787 | TCONS_00072068-exon-scaffold_70-1491911889:216713..216787 | Clytia hemisphaerica | exon |
| TCONS_00072068-exon-scaffold_70-1510915933:216713..216787 | TCONS_00072068-exon-scaffold_70-1510915933:216713..216787 | Clytia hemisphaerica | exon |
| TCONS_00072068-exon-scaffold_70-1575043694:216713..216787 | TCONS_00072068-exon-scaffold_70-1575043694:216713..216787 | Clytia hemisphaerica | exon |
| TCONS_00072068-exon-scaffold_70-1491911889:218070..218258 | TCONS_00072068-exon-scaffold_70-1491911889:218070..218258 | Clytia hemisphaerica | exon |
| TCONS_00072068-exon-scaffold_70-1510915933:218070..218258 | TCONS_00072068-exon-scaffold_70-1510915933:218070..218258 | Clytia hemisphaerica | exon |
| TCONS_00072068-exon-scaffold_70-1575043694:218070..218258 | TCONS_00072068-exon-scaffold_70-1575043694:218070..218258 | Clytia hemisphaerica | exon |
| TCONS_00072068-exon-scaffold_70-1491911889:218820..219245 | TCONS_00072068-exon-scaffold_70-1491911889:218820..219245 | Clytia hemisphaerica | exon |
| TCONS_00072068-exon-scaffold_70-1510915933:218820..219245 | TCONS_00072068-exon-scaffold_70-1510915933:218820..219245 | Clytia hemisphaerica | exon |
| TCONS_00072068-exon-scaffold_70-1575043694:218820..219245 | TCONS_00072068-exon-scaffold_70-1575043694:218820..219245 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_70 | supercontig | scaffold_70:214254..219245 + |
Blast
The following BLAST results are available for this feature:
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