TCONS_00072063 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072063
Unique NameTCONS_00072063
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1743

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072063 ID=TCONS_00072063|Name=TCONS_00072063|organism=Clytia hemisphaerica|type=transcript|length=1743bp
CAGCTTCCACAGATATCGCGGATAACAACGGCTACACTCCTTTCGACTGc
gcaaaacaaaagaatctcaATTACTGTCTATTGGTCATACTCTCGCACCT
CAAGTTTCGTAATAAGGCCCTGAACAGTCATAACAAGAACAACCATACGG
CTCTTGACACACGACAACAACAAATGAACAACAAAACTCAAGATACGGGA
GCATTAACAGTACCCAACAACCGTCAAAAACGAGATAAATCTCCTGATTT
ACGGCAACCTTGTAAGACTCTGAACACACCAAGCTTGAATAAGGCTGAAG
ACACACGACAAAGGAATAAAAGCCCGCAAAGAGTGAACGAATCGAATGCA
ACTTTTGAAAAACGTTCGACTAAACAGGTTGAGGATAAACGAAAATTGAC
GAGACAAGATGATATATCAACAAAAGACTCCAAAAAAAGTTCGTCCTCCA
ATCAACCTCAACTTCGTCCAAGTAACGAGCAGGATAACGAGTTCGAAGAT
AGTGACGGCCAAGCTTTTGATATCCCGCAAGGTGACCTCGAAAAACTTCG
TCAAAGTCAAAATATCGAATCTGCTGTGGAAATTACGAACCAAAAAGTTT
CAGTTACGCGGGACCAAACATCAGTTACGCGGGACCAAACATCAGTTACG
CGCAACAATCAGCAAACTTCGGACTACAGTAATTCAATGTCATCAGATGG
TGGTTCAGATTACAATTTCAACGATCAGTTGGTTGTTTTGGTTCAACATC
AAGGTTCTGATGATGAATTGGTCATTGATGTTGATGCGCACAACTCAAAA
TCTTCTGGAGCAGATGACGTGGATGGTTACCAAGACAATCTTCACGGGGA
TGAAGAAGAAGATCTGCTGGATATCCCTTTCGCTCGCAACGGGAGCATCA
CTACAATAGGGGTGGTGTCTGAAGGGAGCATGGCTTTCAATAGCGCATCC
GTCGACCCGAGTGTCTCGAGTCTGATGAATAGCAGTTCAGTTGAAGAGAA
TGATAAATCGCAACCACCGTCTTCAAGGCGTAGTCCTTCAAACTCGTCCA
AAAAGAACTCAAAGCCACCAGGACCCACCAAAACTGACTACAGTCCAAGA
CTTCCCCTATCTTCACCCTCCGATCTTACGGCGCCCATGCCACCCCCGTC
ACATTACTATGGTAACCAACATGGGAGTCACAGCCCTGTACCAGCTGATA
ACTACAGAAGCCAATATGGAGGTCCATCGCCACAACATCAAGATATCAAT
GCAGAGGTTTTAGTCCTTGATGATGATGGAGGAGGTGAAAATATTACCAT
GGCACGACCAAAAACATCTAAGGGACGACGTAATCAAACCGACCAACGCT
CATTGACTCGTGATTCATGGCCGCCCCCTAAATCAACGCCACAAAGCCGC
CCTCAAGATGATGAAGCGCCAAAGCAGCAAAAAACATCACCACGAATCTC
ATCCAATGTTCGTTTGGCGCCTTTATCCGTGTCCTCACTTCCTAAACCTC
CTTCGTATCGTTACGATTCATGATAGAGTTCGTCCACTGTCAATAAAAAT
TGGAATCTGAAGCTGTATTTGACAAAGTTCGTGAATAGCAGTCATAAGTG
AAGTTAattaaatcggtaaaatcacgacgacgaacgaaaatttaaccgGC
TACtgatttcaaccaatcaaatttcgtattttcactagccttatacattt
ttcgtccgtcgtcgtgattatccttgtatgcttaacctcagta
Run BLAST on NCBI

transcript from alignment at scaffold_70:149497..156004+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072063 ID=TCONS_00072063|Name=TCONS_00072063|organism=Clytia hemisphaerica|type=transcript|length=6508bp|location=Sequence derived from alignment at scaffold_70:149497..156004+ (Clytia hemisphaerica)
CAGCTTCCACAGATATCGCGGATAACAACGGCTACACTCCTTTCGACTGc
gcaaaacaaaagaatctcaATTACTGTCTATTGGTCATACTCTCGCACCT
CAAGTTTCGTAATAAGGCCCTGAACAGTCATAACAAGAACAACCATACGG
CTCTTGACACACGACAACAACAAATGAACAACAAAACTCAAGATACGGGA
GCATTAACAGTACCCAACAACCGTCAAAAACGAGATAAATCTCCTGATTT
ACGGCAACCTTGTAAGACTCTGAACACACCAAGCTTGAATAAGGCTGAAG
ACACACGACAAAGGAATAAAAGCCCGCAAAGAGTGAACGAATCGAATGCA
ACTTTTGAAAAACGTTCGACTAAACAGGTTGAGGATAAACGAAAATTGAC
GAGACAAGATGATATATCAACAAAAGACTCCAAAAAAAGGTTAGTTTAAA
ACATCAACATATATAGGCGGGGTCGAAGAACGGTCGAATAatcaaatttg
ttcgaattacgaAGGACTCAAACTCAGGAGTTTTTCCAAAAGTATTGCTA
ACCGAAGAGATCTGGTCAGTAAACCTTTTTGGAAATGAGGAAACTTCAAG
TATTAAGCTCTGACCGTATCCCACCTTAAGAAGACCGCGAGTATTGGTTT
GCGGAGCTAACTAACACCATTTcgttacatgttttttaatgagaacatct
aaaattttccttgttcttattttcaccatttttgtgagcatttttgccta
ttttcttaagaaatcggatgttttagagttcacaaagccttaacatgttc
ttaggTTTCTTCTTCTTGTTCATCGAAgacttatgtttttatatagtttg
ttcttataaaaagttttttctcataaaaagtGTCATACTTTTATCTCTTC
AGTTCGTCCTCCAATCAACCTCAACTTCGTCCAAGTAACGAGCAGGATAA
CGAGTTCGAAGATAGTGACGGCCAAGCTTTTGATATCCCGCAAGGTGACC
TCGAAAAACTTCGTCAAAGTCAAAATATCGAATCTGCTGTGGAAATTACG
AACCAAAAAGTTTCAGTTACGCGGGACCAAACATCAGTTACGCGGGACCA
AACATCAGTTACGCGCAACAATCAGCAAACTTCGGACTACAGTAATTCAA
TGTCATCAGATGGTGGTTCAGATTACAATTTCAACGATCAGTTGGTTGTT
TTGGTTCAACATCAAGGTTCTGATGATGAATTGGTCATTGATGTTGATGC
GCACAACTCAAAGTATGTAATATTTTCTTCCCTTGTCTGTTATACAGGTC
CTATATCTacggaaattttaaaattcattgccgtgCTACGCTACGTTAAC
GCACAGATATCGTATTCTTTTACACACTAGGTAGGCTTACTGCTCAGAGA
TTTCCCGTATAATTGTGTCTAGTCCGCCatgttgttttctattttaCCTT
GGATTTTcgttcaaaacatttgaatcgAAAACAAGATGGCGAACTAGTCA
GCTATTAAACTGGACACGTTTCTTTTTATATGTTATGGCTGtttattgtt
tgtttgtttttcttcgaTACGAATTTGTATAAGACTGCACTCGTCTACTG
AAAAAAGTTGTGCACTTTTTGcaaaaagcattaaaatttCGATACTCTAA
TTCCCCAGATCTTCTGGAGCAGATGACGTGGATGGTTACCAAGACAATCT
TCACGGGGATGAAGAAGAAGATCTGCTGGATATCCCTTTCGCTCGCAACG
GGAGCATCACTACAATAGGGGTGGTGTCTGAAGGGAGCATGGCTTTCAAT
AGCGCATCCGTCGACCCGAGTGTCTCGAGTCTGATGAATAGCAGTTCAGT
TGAAGAGAATGATAAATCGGTACGTTGATCTTTTTTCGCTTATTTACTTA
CAGCAAACTACCGTGTGACCCACAAAAAGATATTATGGTTTAATGAAGGA
AGATGGATGACGTAGACAGCCCAGTAATTTAGGATTTTAAGACAGTCttt
tgttttcacggggtccacggcctaTTAACTGAAAGGAACATTGCAAACTG
CGTCCGAATTATTCACTGTTCTGTCAaatcatttttccattttaagaAAG
GAAGCACAAACAACCTTTAAAGTTTAGTATATGACTTTTTAGATTCATAG
TTCAACATTTCTCAAGTTTAACATTTTGAATTCTCAAAGCCAAAAAAAAG
GTTAGCAAATTGAGCCTTGGTGTGGTATAATCTGCTTCTACTATCCCAGT
TCTTTGAATTCTGTAAGGTTTTTAAATGAACAAGGCTTCGTTATTCGATA
AAGATATGAATATCGTTTTGAAACTCTTTTTTACCTTTAGCAACCACCGT
CTTCAAGGCGTAGTCCTTCAAACTCGTCCAAAAAGAACTCAAAGCCACCA
GGACCCACCAAAACTGACTACAGTCCAAGACTTCCCCTATCTTCACCCTC
CGATCTTACGGCGCCCATGCCACCCCCGTCACATTACTATGGTAACCAAC
ATGGGAGTCACAGCCCTGTACCAGCTGATAACTACAGGTAAATTTCTCAG
CCTAACAAGCGAATCCTTTTTCTTAGCAGTAGTGCTAAAGCCCGGGGGGG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNgagacggatcaagggtaagta
gagaaatccagggaaaggagtggcgccctcccctaccttcgggtagacag
ctatacgaaaagggagccttcgggtcgccctcggctgcggtcgcaaactt
actttacttaggcaaaatgggtgccgggtatgtgcgagccataagagTCT
Actttcacaccctcgaaagtcttttaaaggggtacaaaaaccattgaaaa
gaaatttgagttcCTGTAAGGATCCAAAAAACACGAAATccaaaatttcc
tctctcaaagggtcgtgattttAGTCTCTCTAGGGTCCTAAAAACACCAC
TTTTtcctctctctaagggtcgattttcgatttttggctcggacatgaCC
CGTCActtcgcaaacctagtaccccccccacCCCGGGCGCTAAAAGGCCT
CAAGAATGATTGGGGGTCAGTGGGGCTTAAATTCAAGTCCAAAGCCTCTA
AACTATGTTTTGTCCAATTAGATAATGATTTACGGTGTTTAAAAGGTGCA
AACAGTGAAAGAAATTCTTCCTTATCCAACCATGATGCGCGTCCATTTTT
CCCAAAGAAATGGCCCTCAGTTCAACGGCTTGTCGGGGCCTATGTGGTTA
GGATTCTTCTCGAAGATCATTTCCTTTAGATGAATAAATGATCATTACAT
GGACCTGGTCTCTGTGACCCAGTGAGCTTTTTTCTGCATGATAAAATTAA
TGAGCTAGGATGCTAATAGACAGATGATCTATTATAGTCTTTAtagtttt
catttcaatttttcttgtcaTTCCCAGTGGGAATAAGACttccttatttt
tttcaatcagtgatcaAATCTTTACAGCTTctttcacacccctgtctcag
cgACCCGGTGAAGCTTTGAAATCCATTGGGGTGGCTATGAAAAAAGTAAT
TTAACTGGATTTGAATACCTAGGTTCACGAAAACTCACTGGGTTGAGGAC
TCGATTTTCACCGGGGTAGGGATaatctttttcgttttttgattTGACCG
GGTTGAAATaataaatttcaaagattttccagGGTAGAATTTCAATATAT
TTTGCACCGGTTTACTCATAAACCCACTTGGGCTTGAAACTAGACCATTT
TGGCATTTTTATCCACTGGTTATTTGCTGgatcactgatacaggggtgtt
ctCTCTCACCGGGTGTGGttctttgaccaattttcccagtgggtagacat
tttctttataagcaactccaatttttgggccagggctggggttgcttagc
attctagctcattttctgaaaaattagcTTTGAccaccatatttatgctt
attggcttagattatttttaaagcttttactttacgaaaTAGAGAATTTT
TTGTTGCTAATTTCAGGGCTCGAGCTTTAGGAACTGGGTTGCTTAGGAAA
AAAATATGTAGAGAGCCACTCGAGGGTGTATAATCTTTTTTATTAAACAT
TTCCTCATCTTCTTCATAGAAGCCAATATGGAGGTCCATCGCCACAACAT
CAAGATATCAATGCAGAGGTTTTAGTCCTTGATGATGATGGAGGAGGTGA
AAATATTACCATGGCACGACCAAAAACATCTGTATGtcaattattttctt
cttcttttccaaaaatatggtGTAGTTTATTTGGTACAAAATGTGTAGAT
TtgacgccaaaatttgtaaaaagcaGCTTTTGCTTGAAAAGAAATTCGAG
TTTGACGTATATACACTGCCCTGATGACGAAATTACTCACTAAGTTTGAC
TTTTTTGTTCCTCGAGTACAAAAAACGTCTAGTAGGATTTGACGACGTAG
GATTTGACGACGTAGACGGGAACGTAGACGGAGAAGTAGACGAGGATGTG
GGAACATCATCTAGAACGGATATTATTGAGAAAAATTTGTCACtaggttt
tgatttttctgttccTTGAGTACAAAATACGTCCAGTAGGATTTGACGAC
GTAGGATTTGACGACGTAGGATTTGACGACGTAGGACGGGAACGTAGCCG
GAGAAGTAGACGGGGATGTAGACGAGGATGTGGGAACATCATCTAGAACG
GATACTATTGAGAAAAATTTGTCACtaggttttgatttttctgttccTTG
AGTACAAAATACGTCCAGTAGGATTTGACGACGTGGACGTGTACGGGGAC
GTAGAAATGGGATCGACATCTAGAACGGATACCATTTTCAGtgtataaat
aaatattttggatAACTGTTTTGTGGCATGATTGATAGTGTAATGTGTAG
TGTTTTTTGATAGAGACTTAACACGTGAGTTTGCAAAGCGTCTAGGTAAG
CTTTGGAACGAAAGATTAGATAGCAACTCTCGTCGCGTTAGTATCAATAA
GTTATAACTTTTCGAAGAAATGAAGCAAATCACCCAGTGAGGAGGAAGAA
CATTGGTagattatattttttacaagaCTGAACCAAaggaaaaaacaaag
atttatgaGAACACATTCTCAAGCCTTGCTAAGGTATGAGAAAGTCTGAA
GGTATTAAATTTTCGATTTAATATATTTCTATCTTTAACTGATCGGGCTA
AATCTTTCTGTTAGCTAGTATCAGTTTCAAACAGTTTTAATATGACTCTC
TTTTTCTCATATTCAGAAAGGACGACGTAATCAAACCGACCAACGCTCAT
TGACTCGTGATTCATGGCCGCCCCCTAAATCAACNTTAACACGTGAGTTT
ACAAAGCGTCTAGGTAAGCTTTGGAACGAAAGATTAGATAGCAACTCTCG
TCGCGTTAGTATCAATAAGTTATAACTTTTCGAAGAAATGAAGCAAATCA
CCCAGTGAGGAGGAAGAACATTGGTagattatattttttacaagaCTAAA
CCAAGggaaaaaacaaagatttatgaGAACACATTCTCAAGCCTTGCTAA
GGTATGAGAAAGTCTGAAGGTATTAAATTTTCGATTTAATATATTTCTAT
CTTTAACTGATCGGGCTAAATCTTTCTGTTAGCTAGTATCAGTTTCAAAC
AGTTTTAATATGACTCTCTTTTTCTCATATTCAGAAGGGACGACGTAATC
AAACCGACCAACGCTCATTGACTCGTGATTCATGGCCGCCCCCTAAATCA
ACGCCACAAAGCCGCCCTCAAGATGATGAAGCGCCAAAGCAGCAAAAAAC
ATCACCACGAATCTCATCCAATGTTCGTTTGGCGCCTTTATCCGTGTCCT
CACTTCCTAAACCTCCTTCGTATCGTTACGATTCATGATAGAGTTCGTCC
ACTGTCAATAAAAATTGGAATCTGAAGCTGTATTTGACAAAGTTCGTGAA
TAGCAGTCATAAGTGAAGTTAattaaatcggtaaaatcacgacgacgaac
gaaaatttaaccgGCTACtgatttcaaccaatcaaatttcgtattttcac
tagccttatacatttttcgtccgtcgtcgtgattatccttgtatgcttaa
cctcagta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044757XLOC_044757Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072063-exon-scaffold_70-1491911889:149497..149935TCONS_00072063-exon-scaffold_70-1491911889:149497..149935Clytia hemisphaericaexon
TCONS_00072063-exon-scaffold_70-1510915933:149497..149935TCONS_00072063-exon-scaffold_70-1510915933:149497..149935Clytia hemisphaericaexon
TCONS_00072063-exon-scaffold_70-1575043694:149497..149935TCONS_00072063-exon-scaffold_70-1575043694:149497..149935Clytia hemisphaericaexon
TCONS_00072063-exon-scaffold_70-1491911889:150399..150758TCONS_00072063-exon-scaffold_70-1491911889:150399..150758Clytia hemisphaericaexon
TCONS_00072063-exon-scaffold_70-1510915933:150399..150758TCONS_00072063-exon-scaffold_70-1510915933:150399..150758Clytia hemisphaericaexon
TCONS_00072063-exon-scaffold_70-1575043694:150399..150758TCONS_00072063-exon-scaffold_70-1575043694:150399..150758Clytia hemisphaericaexon
TCONS_00072063-exon-scaffold_70-1491911889:151155..151365TCONS_00072063-exon-scaffold_70-1491911889:151155..151365Clytia hemisphaericaexon
TCONS_00072063-exon-scaffold_70-1510915933:151155..151365TCONS_00072063-exon-scaffold_70-1510915933:151155..151365Clytia hemisphaericaexon
TCONS_00072063-exon-scaffold_70-1575043694:151155..151365TCONS_00072063-exon-scaffold_70-1575043694:151155..151365Clytia hemisphaericaexon
TCONS_00072063-exon-scaffold_70-1491911889:151837..152033TCONS_00072063-exon-scaffold_70-1491911889:151837..152033Clytia hemisphaericaexon
TCONS_00072063-exon-scaffold_70-1510915933:151837..152033TCONS_00072063-exon-scaffold_70-1510915933:151837..152033Clytia hemisphaericaexon
TCONS_00072063-exon-scaffold_70-1575043694:151837..152033TCONS_00072063-exon-scaffold_70-1575043694:151837..152033Clytia hemisphaericaexon
TCONS_00072063-exon-scaffold_70-1491911889:154016..154127TCONS_00072063-exon-scaffold_70-1491911889:154016..154127Clytia hemisphaericaexon
TCONS_00072063-exon-scaffold_70-1510915933:154016..154127TCONS_00072063-exon-scaffold_70-1510915933:154016..154127Clytia hemisphaericaexon
TCONS_00072063-exon-scaffold_70-1575043694:154016..154127TCONS_00072063-exon-scaffold_70-1575043694:154016..154127Clytia hemisphaericaexon
TCONS_00072063-exon-scaffold_70-1491911889:155581..156004TCONS_00072063-exon-scaffold_70-1491911889:155581..156004Clytia hemisphaericaexon
TCONS_00072063-exon-scaffold_70-1510915933:155581..156004TCONS_00072063-exon-scaffold_70-1510915933:155581..156004Clytia hemisphaericaexon
TCONS_00072063-exon-scaffold_70-1575043694:155581..156004TCONS_00072063-exon-scaffold_70-1575043694:155581..156004Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_70supercontigscaffold_70:149497..156004 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.4738	2.09033	1.73258	1.695	7.10658	6.74142	8.73503	9.41362	6.61207	7.70315	2.24489	4.43017	4.84698	5.46662	2.99655	3.22859	6.0214	3.81409	7.01294	4.52774	2.34073	2.62528	5.83506	4.17626	10.645	11.3459	4.2399	0.000151647	3.22532	3.86084
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072063 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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