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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072061 ID=TCONS_00072061|Name=TCONS_00072061|organism=Clytia hemisphaerica|type=transcript|length=1439bp gtccaattcaatttttaaataccattaaaaaaacttcaaaattttgaaca tttcgCTTCACTGCGATATGATAATCTGGCAATCCTGTTGATTTAAGAAA TCGTTCAAATATTTCTGGTATTGATCTTTATTCAAGGTTACGCCCGACGC CCAAGGATGACCGCCACCAATTTTACTTCCAGTGATATCCAACAGGTAGA ATGCTAAGTCACGGGCGCTAAACGCACCATCCACCCTTCGTAAGGAGAAA TAATAAGACAAGGCGCCTGTCTGAGCATTTCTTGTGGGGTCGTTCATCAA AATGGCATAGGAAGCTCCGCGCGTTTGTAGCTCTTTGACAACCATCGGTT CCAAAGATCTTCCGtaatgaaaaatattgatatttgcTGCATACACACTC ACAATCTTGTCTGCAATCTTGACGTTCTCTATCACCTTACCTGATGCTAG AACACCAGGCAATTTATGCATAAGATCAAGATAGGCGGTCAATTTATCAG CACTATAAACATCCATATCTCGTCCACTTAGAATGAGGTTGGTTCGCTCG AGGTAGAGTTTCGATTGAATTTCGAACTTGTTGAAAACTTCATCACTAGT GAGACTAGAATCTGCAAAGAATGCCCAATCCTTTTCATTAGTAAGTACTT GATCCAAGACATAGAACAAAGACATATCAATCTTCTCGACATCTTTTATG AGTTCCTCATTAGAAGGATTCATAGCTTTCTTAAAAGCTgcatttgtaat tttttccgCCTCGACTTTACCAGCAACTGTGAAATCCATTCCTTCGTACT CACTGAACTGTACAACAGTCAATAAATTCTCGATATCGTATTTCGCTTCC ACCCCACTTTCCAACATTAAGTTATACATCATTTTTGCAGCGCATTTGTC AGCATTGAAATTGAGCTCAAAATTTGAATAATCATTTAATCTCCGTACTG GTGCATCATCTCGCATCTGGTGATGATCGTAAACCGTGATCGGAATCTTA TCAACAATCTTCTCCAGGAACTCTATCTCCTCCTCCAGATCTGGTGTACA ATCAACATACACAATCTGTTGTCTGCCAAAATCTCCCATAACATCAGTCT CCTCGACTGTTTGTTTCAGCCTGTCAAAGGATTTTTTAGTTCTGGAGTAA GGTACAAGGCGCACTTTAGATGATCTGCTTTGGTAAATCCATGTAGCAAT GATTGCAGCCATCAGCCCATCTATGCAAGGTTTTTGTGGATAAGAATGAA AGACTATAATGGTTGTAAGAGGTGTTGGTGCCATGCTGTATTGGTTATTG TTGGTATTCCCCAGATTTGGATGTCCTTTTGATGCTTTcaactaaaagaa aaaacgaaaattacATGTTATTAAACTGCAGAATATATTCTAAGTCTTAA AATCAGGAGCCATATAGAATTGGTATGGTACGGAAGGTT Run BLAST on NCBI transcript from alignment at scaffold_70:123956..125542+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072061 ID=TCONS_00072061|Name=TCONS_00072061|organism=Clytia hemisphaerica|type=transcript|length=1587bp|location=Sequence derived from alignment at scaffold_70:123956..125542+ (Clytia hemisphaerica) gtccaattcaatttttaaataccattaaaaaaacttcaaaattttgaaca
tttcgCTTCACTGCGATATGATAATCTGGCAATCCTGTTGATTTAAGAAA
TCGTTCAAATATTTCTGGTATTGATCTTTATTCAAGGTTACGCCCGACGC
CCAAGGATGACCGCCACCAATTTTACTTCCAGTGATATCCAACAGGTAGA
ATGCTAAGTCACGGGCGCTAAACGCACCATCCACCCTTCGTAAGGAGAAA
TAATAAGACAAGGCGCCCGTCTTAGCATTTCTTGTGGGGTCGTTCATCAA
AATGGCGTACGAAGCTCCANAATAATAAGACAAGGCGCCTGTCTGAGCAT
TTCTTGTGGGGTCGTTCATCAAAATGGCATAGGAAGCTCCGCGCGTTTGT
AGCTCTTTGACAACCATCGGTTCCAAAGATCTTCCGtaatgaaaaatatt
gatatttgcTGCATACACACTCACAATCTTGTCTGCAATCTTGACGTTCT
CTATCACCTTACCTGATGCTAGAACACCAGGCAATTTATGCATAAGATCA
AGATAGGCGGTCAATTTATCAGCACTATAAACATCCATATCTCGTCCACT
TAGAATGAGGTTGGTTCGCTCGAGGTAGAGTTTCGATTGAATTTCGAACT
TGTTGAAAACTTCATCACTAGTGAGACTAGAATCTGCAAAGAATGCCCAA
TCCTTTTCATTAGTAAGTACTTGATCCAAGACATAGAACAAAGACATATC
AATNaagcctctactaattaaagtaatcCTTTTCATTAGTAAGTACTTGA
TCCAAGACATAGAACAAAGACATATCAATCTTCTCGACATCTTTTATGAG
TTCCTCATTAGAAGGATTCATAGCTTTCTTAAAAGCTgcatttgtaattt
tttccgCCTCGACTTTACCAGCAACTGTGAAATCCATTCCTTCGTACTCA
CTGAACTGTACAACAGTCAATAAATTCTCGATATCGTATTTCGCTTCCAC
CCCACTTTCCAACATTAAGTTATACATCATTTTTGCAGCGCATTTGTCAG
CATTGAAATTGAGCTCAAAATTTGAATAATCATTTAATCTCCGTACTGGT
GCATCATCTCGCATCTGGTGATGATCGTAAACCGTGATCGGAATCTTATC
AACAATCTTCTCCAGGAACTCTATCTCCTCCTCCAGATCTGGTGTACAAT
CAACATACACAATCTGTTGTCTGCCAAAATCTCCCATAACATCAGTCTCC
TCGACTGTTTGTTTCAGCCTGTCAAAGGATTTTTTAGTTCTGGAGTAAGG
TACAAGGCGCACTTTAGATGATCTGCTTTGGTAAATCCATGTAGCAATGA
TTGCAGCCATCAGCCCATCTATGCAAGGTTTTTGTGGATAAGAATGAAAG
ACTATAATGGTTGTAAGAGGTGTTGGTGCCATGCTGTATTGGTTATTGTT
GGTATTCCCCAGATTTGGATGTCCTTTTGATGCTTTcaactaaaagaaaa
aacgaaaattacATGTTATTAAACTGCAGAATATATTCTAAGTCTTAAAA
TCAGGAGCCATATAGAATTGGTATGGTACGGAAGGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00072061-exon-scaffold_70-1491911889:123956..124217 | TCONS_00072061-exon-scaffold_70-1491911889:123956..124217 | Clytia hemisphaerica | exon |
TCONS_00072061-exon-scaffold_70-1510915933:123956..124217 | TCONS_00072061-exon-scaffold_70-1510915933:123956..124217 | Clytia hemisphaerica | exon |
TCONS_00072061-exon-scaffold_70-1575043694:123956..124217 | TCONS_00072061-exon-scaffold_70-1575043694:123956..124217 | Clytia hemisphaerica | exon |
TCONS_00072061-exon-scaffold_70-1491911889:124290..124700 | TCONS_00072061-exon-scaffold_70-1491911889:124290..124700 | Clytia hemisphaerica | exon |
TCONS_00072061-exon-scaffold_70-1510915933:124290..124700 | TCONS_00072061-exon-scaffold_70-1510915933:124290..124700 | Clytia hemisphaerica | exon |
TCONS_00072061-exon-scaffold_70-1575043694:124290..124700 | TCONS_00072061-exon-scaffold_70-1575043694:124290..124700 | Clytia hemisphaerica | exon |
TCONS_00072061-exon-scaffold_70-1491911889:124777..125542 | TCONS_00072061-exon-scaffold_70-1491911889:124777..125542 | Clytia hemisphaerica | exon |
TCONS_00072061-exon-scaffold_70-1510915933:124777..125542 | TCONS_00072061-exon-scaffold_70-1510915933:124777..125542 | Clytia hemisphaerica | exon |
TCONS_00072061-exon-scaffold_70-1575043694:124777..125542 | TCONS_00072061-exon-scaffold_70-1575043694:124777..125542 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_70 | supercontig | scaffold_70:123956..125542 + |
Blast
The following BLAST results are available for this feature:
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