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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072060 ID=TCONS_00072060|Name=TCONS_00072060|organism=Clytia hemisphaerica|type=transcript|length=1573bp
TTGCAAtacagaaattttctttttaaattagTGCAAGAAAGTTAAATATT
CATTTATGATTAAATACATCGAGTACATTttataattcaaaaaaaatatt
ttatagacAAAAGcaatttattaaaaatttatatgtccaattcaattttt
aaataccattaaaaaaacttcaaaattttgaacatttcgCTTCACTGCGA
TATGATAATCTGGCAATCCTGTTGATTTAAGAAATCGTTCAAATATTTCT
GGTATTGATCTTTATTCAAGGTTACGCCCGACGCCCAAGGATGACCGCCA
CCAATTTTACTTCCAGTGATATCCAACAGGTAGAATGCTAAGTCACGGGC
GCTAAACGCACCATCCACCCTTCGTAAGGAGAAATAATAAGACAAGGCGC
CTGTCTGAGCATTTCTTGTGGGGTCGTTCATCAAAATGGCATAGGAAGCT
CCGCGCGTTTGTAGCTCTTTGACAACCATCGGTTCCAAAGATCTTCCGta
atgaaaaatattgatatttgcTGCATACACACTCACAATCTTGTCTGCAA
TCTTGACGTTCTCTATCACCTTACCTGATGCTAGAACACCAGGCAATTTA
TGCATAAGATCAAGATAGGCGGTCAATTTATCAGCACTATAAACATCCAT
ATCTCGTCCACTTAGAATGAGGTTGGTTCGCTCGAGGTAGAGTTTCGATT
GAATTTCGAACTTGTTGAAAACTTCATCACTAGTGAGACTAGAATCTGCA
AAGAATGCCCAATCCTTTTCATTAGTAAGTACTTGATCCAAGACATAGAA
CAAAGACATATCAATCTTCTCGACATCTTTTATGAGTTCCTCATTAGAAG
GATTCATAGCTTTCTTAAAAGCTgcatttgtaattttttccgCCTCGACT
TTACCAGCAACTGTGAAATCCATTCCTTCGTACTCACTGAACTGTACAAC
AGTCAATAAATTCTCGATATCGTATTTCGCTTCCACCCCACTTTCCAACA
TTAAGTTATACATCATTTTTGCAGCGCATTTGTCAGCATTGAAATTGAGC
TCAAAATTTGAATAATCATTTAATCTCCGTACTGGTGCATCATCTCGCAT
CTGGTGATGATCGTAAACCGTGATCGGAATCTTATCAACAATCTTCTCCA
GGAACTCTATCTCCTCCTCCAGATCTGGTGTACAATCAACATACACAATC
TGTTGTCTGCCAAAATCTCCCATAACATCAGTCTCCTCGACTGTTTGTTT
CAGCCTGTCAAAGGATTTTTTAGTTCTGGAGTAAGGTACAAGGCGCACTT
TAGATGATCTGCTTTGGTAAATCCATGTAGCAATGATTGCAGCCATCAGC
CCATCTATGCAAGGTTTTTGTGGATAAGAATGAAAGACTATAATGGTTGT
AAGAGGTGTTGGTGCCATGCTGTATTGGTTATTGTTGGTATTCCCCAGAT
TTGGATGTCCTTTTGATGCTTTcaactaaaagaaaaaacgaaaattacAT
GTTATTAAACTGCAGAATATATTCTAAGTCTTAAAATCAGGAGCCATATA
GAATTGGTATGGTACGGAAGGTT Run BLAST on NCBI transcript from alignment at scaffold_70:123822..125542+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072060 ID=TCONS_00072060|Name=TCONS_00072060|organism=Clytia hemisphaerica|type=transcript|length=1721bp|location=Sequence derived from alignment at scaffold_70:123822..125542+ (Clytia hemisphaerica)
TTGCAAtacagaaattttctttttaaattagTGCAAGAAAGTTAAATATT
CATTTATGATTAAATACATCGAGTACATTttataattcaaaaaaaatatt
ttatagacAAAAGcaatttattaaaaatttatatgtccaattcaattttt
aaataccattaaaaaaacttcaaaattttgaacatttcgCTTCACTGCGA
TATGATAATCTGGCAATCCTGTTGATTTAAGAAATCGTTCAAATATTTCT
GGTATTGATCTTTATTCAAGGTTACGCCCGACGCCCAAGGATGACCGCCA
CCAATTTTACTTCCAGTGATATCCAACAGGTAGAATGCTAAGTCACGGGC
GCTAAACGCACCATCCACCCTTCGTAAGGAGAAATAATAAGACAAGGCGC
CCGTCTTAGCATTTCTTGTGGGGTCGTTCATCAAAATGGCGTACGAAGCT
CCANAATAATAAGACAAGGCGCCTGTCTGAGCATTTCTTGTGGGGTCGTT
CATCAAAATGGCATAGGAAGCTCCGCGCGTTTGTAGCTCTTTGACAACCA
TCGGTTCCAAAGATCTTCCGtaatgaaaaatattgatatttgcTGCATAC
ACACTCACAATCTTGTCTGCAATCTTGACGTTCTCTATCACCTTACCTGA
TGCTAGAACACCAGGCAATTTATGCATAAGATCAAGATAGGCGGTCAATT
TATCAGCACTATAAACATCCATATCTCGTCCACTTAGAATGAGGTTGGTT
CGCTCGAGGTAGAGTTTCGATTGAATTTCGAACTTGTTGAAAACTTCATC
ACTAGTGAGACTAGAATCTGCAAAGAATGCCCAATCCTTTTCATTAGTAA
GTACTTGATCCAAGACATAGAACAAAGACATATCAATNaagcctctacta
attaaagtaatcCTTTTCATTAGTAAGTACTTGATCCAAGACATAGAACA
AAGACATATCAATCTTCTCGACATCTTTTATGAGTTCCTCATTAGAAGGA
TTCATAGCTTTCTTAAAAGCTgcatttgtaattttttccgCCTCGACTTT
ACCAGCAACTGTGAAATCCATTCCTTCGTACTCACTGAACTGTACAACAG
TCAATAAATTCTCGATATCGTATTTCGCTTCCACCCCACTTTCCAACATT
AAGTTATACATCATTTTTGCAGCGCATTTGTCAGCATTGAAATTGAGCTC
AAAATTTGAATAATCATTTAATCTCCGTACTGGTGCATCATCTCGCATCT
GGTGATGATCGTAAACCGTGATCGGAATCTTATCAACAATCTTCTCCAGG
AACTCTATCTCCTCCTCCAGATCTGGTGTACAATCAACATACACAATCTG
TTGTCTGCCAAAATCTCCCATAACATCAGTCTCCTCGACTGTTTGTTTCA
GCCTGTCAAAGGATTTTTTAGTTCTGGAGTAAGGTACAAGGCGCACTTTA
GATGATCTGCTTTGGTAAATCCATGTAGCAATGATTGCAGCCATCAGCCC
ATCTATGCAAGGTTTTTGTGGATAAGAATGAAAGACTATAATGGTTGTAA
GAGGTGTTGGTGCCATGCTGTATTGGTTATTGTTGGTATTCCCCAGATTT
GGATGTCCTTTTGATGCTTTcaactaaaagaaaaaacgaaaattacATGT
TATTAAACTGCAGAATATATTCTAAGTCTTAAAATCAGGAGCCATATAGA
ATTGGTATGGTACGGAAGGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072060-exon-scaffold_70-1491911889:123822..124217 | TCONS_00072060-exon-scaffold_70-1491911889:123822..124217 | Clytia hemisphaerica | exon |
| TCONS_00072060-exon-scaffold_70-1510915933:123822..124217 | TCONS_00072060-exon-scaffold_70-1510915933:123822..124217 | Clytia hemisphaerica | exon |
| TCONS_00072060-exon-scaffold_70-1575043694:123822..124217 | TCONS_00072060-exon-scaffold_70-1575043694:123822..124217 | Clytia hemisphaerica | exon |
| TCONS_00072060-exon-scaffold_70-1491911889:124290..124687 | TCONS_00072060-exon-scaffold_70-1491911889:124290..124687 | Clytia hemisphaerica | exon |
| TCONS_00072060-exon-scaffold_70-1510915933:124290..124687 | TCONS_00072060-exon-scaffold_70-1510915933:124290..124687 | Clytia hemisphaerica | exon |
| TCONS_00072060-exon-scaffold_70-1575043694:124290..124687 | TCONS_00072060-exon-scaffold_70-1575043694:124290..124687 | Clytia hemisphaerica | exon |
| TCONS_00072060-exon-scaffold_70-1491911889:124764..125542 | TCONS_00072060-exon-scaffold_70-1491911889:124764..125542 | Clytia hemisphaerica | exon |
| TCONS_00072060-exon-scaffold_70-1510915933:124764..125542 | TCONS_00072060-exon-scaffold_70-1510915933:124764..125542 | Clytia hemisphaerica | exon |
| TCONS_00072060-exon-scaffold_70-1575043694:124764..125542 | TCONS_00072060-exon-scaffold_70-1575043694:124764..125542 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_70 | supercontig | scaffold_70:123822..125542 + |
Blast
The following BLAST results are available for this feature:
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