TCONS_00072059 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072059
Unique NameTCONS_00072059
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length785

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072059 ID=TCONS_00072059|Name=TCONS_00072059|organism=Clytia hemisphaerica|type=transcript|length=785bp
TTGAGATCTGTAATTTGCCACatcttgaaaacgaaagtgaagcTACATTT
CTCGCTCCGCCCATCTTCATAAAAAAGACGAAGTTCCCAAAAAAAAGTCA
GGCAAAGAACGaataaattttcatcttttcagAATGGTTCTTGTTCTTGT
TCTCGGTGACCTGCACATCCCACATCGAAAAAGTGGATTACCAGTAAAGT
TCAAGAAGTTATTGGTACCAGGCAAAATTCAACACATCTTATGTACAGGA
AACCTTTGTACCAAAGAATCATATGACTATTTGAAAACATTAGCAAGTGA
CGTCCACGTTGTTCGTGGTGATTTTGAAGAGAACATAACATACCCAGAAC
AGAAAGTTGTGAGTGTTGGACCTTTCCGTATTGGTTTATGTCATGGCCAT
CAAATTGTTCCATGGGGCGATGCGGAATCGCTTGCTATGGTTCAAAGGCA
GTTGGATGTTGATATTTTGATCACAGGGCATACACACAGATTCGAAGCAT
ACGAGCACGAGGGAAAATTCTACGTCAACCCAGGGTCTGCAACTGGTGCA
TACAATCCTCTAGATTTaaacatCGTCCCCTCTTTTGTGTTGATGGATAT
ACAAGCAGAAACTGTAGTCGCATATGTCTACCAGCTTCATGGAGATGACG
TCAAAGTCGACCGAATCGAATACAAAAAGACGGCAGTCGCCTCgctAACT
ATCTCTTACTACTTGAGCGGCTGCTATGACCTTTATGTGACCGAATTGAA
GAACTATTTTGAATATGTTTTGTACTCATTCCAGC
Run BLAST on NCBI

protein sequence of TCONS_00072059-protein

>TCONS_00072059-protein ID=TCONS_00072059-protein|Name=TCONS_00072059-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
MVLVLVLGDLHIPHRKSGLPVKFKKLLVPGKIQHILCTGNLCTKESYDYL
KTLASDVHVVRGDFEENITYPEQKVVSVGPFRIGLCHGHQIVPWGDAESL
AMVQRQLDVDILITGHTHRFEAYEHEGKFYVNPGSATGAYNPLDLNIVPS
FVLMDIQAETVVAYVYQLHGDDVKVDRIEYKKTAVASLTISYYLSGCYDL
YVTELKNYFEYVLYSFQ
Run BLAST on NCBI

transcript from alignment at scaffold_70:92192..109001+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072059 ID=TCONS_00072059|Name=TCONS_00072059|organism=Clytia hemisphaerica|type=transcript|length=16810bp|location=Sequence derived from alignment at scaffold_70:92192..109001+ (Clytia hemisphaerica)
TTGAGATCTGTAATTTGCCACatcttgaaaacgaaagtgaagcTACATTT
CTCGCTCCGCCCATCTTCATAAAAAAGACGAAGTTCCCAAAAAAAAGTCA
GGCAAAGAACGaataaattttcatcttttcagAATGGTTGTAAGTAATTT
TTGCTCATACAGTATCTTTTATCTAGAGAGCTGATAACACATAACGAtcc
tttttattcattttgaaacCTTTTAACAGCTAATTGGAATGAGTGTGCTt
gaggaattttatttttcaatctcAGCAACTATCCTGTCTCCTTCTTCGAA
gttactttttatattttttcattgttttattcTGTTGAATgataatgggc
tattccatcTATTGCATAGTTTACTTTCCTAAAATGGTTCAAAATTGACA
ATTCACAGCAAGGATATACCCCAAACATTTTTgggtcatttttattttta
tttattccaGTTGAATCACTCCACCTTACCGGCGGgcaaaatatacaaaa
ttttgcaaattcttGTCGTAATTATATTATTTCTGGTTATAATTATATTA
TAATACCACTGATATAGTAATACGAAAGTCAGTAGAAGAAATTCAACAGT
CGATAGTAGTAAAAAAGACTAACTTCTACCACCCTCTTGGAAAGGGCGGC
AGAGGCGTAGAAGGATACttacttttgatacttttggaTGTGTTTGAGCG
TACCGCTCTGGCAAGAATCTTTTGATCCACACCACAATCTTCATTCAATC
CATAATTCCTGAAGGAAGAAATGGATCAGNNNNNNNNNNNNNNNNNNNNN
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GATTTCACACCATTAACCACTACAGTTTGTTGCCTGTCTCTCAAAAAGGA
CTCTATCCAATTATAGATTTTACCAGTtattccaagccttttgaatttcG
ACAGAACAATGGAATGATCCACTTTATCGAAAGCTTTAGAAAAGTCCAAG
TAAACAACATCTACATTGGTCTCTTTGTCCAGTAAAATTTTCCCGAAAAC
CTGGCCCTCCACACACGCTCAGAACATGCGCGGACAGTTCTGGTTGTGTG
TTTGGGACTTTTTGAAGTTCAAAACAGTGAggcatcttttggtctttggg
tttgtttctgacatttttccttcaaagaatatcaatcactttccttTCCC
CCTCGAGTGcacgagaaaaaaatgattagcttgcATTCtcgtgcgggcga
ataaagatgaggcgggaatcttgcactgagggtgctacttagtttccgcc
ccattttgcgcccacaatagaatggtctaaatacgggggtattcaatgat
aaacgatgtcgttctgtaagtgtttgtTTTCTAAGAGacacaaatagtat
attgaatattatcaacttttttttaaagtatttttgagcccaaatttaaa
tatctggttaaataaaaaacaaatgatagcagttctgtttttcctcaaac
ccccgggaaaagtttttttgacgacttagctattttacaaatttcggaaa
agaacttccataggaattccgatacattcCGTTCATTTTGGAacagcttc
aagaaagtcataatggcagatgattttaaaagtttctgaggaaatgtgtg
gagTTTATGGATGTCAGATGTTGATCGCTTGTTGATTCtttgtaaagaaa
aaagataacaggtatagcgttttctaatcctggaatatcaaggttccagc
tacactgcaAAAACGTGAGGCAATGGATTCAATTGAACATCTCAAAATTC
AgtatataattttatttttttcacctttcagaAAAGTTTGAGCCATACCA
TGGGttgtcaaaattatcaaaacaattcTGCGCCTGGGATGGCTGAATTT
CAAAGTTTATATTGTTCACATATCATAAAGTCTAGAATCGTTCCgttttt
ccctaaaaataaaaataggatATACCGTAAAGAACAATTAGGCTTTTAAA
TAAAGTGTCAAATTAAGAAAAGTATATACCGTAAGTcagtctaatgtcaa
catccctcttctaattccgacacccttccttagagataggaataatatga
aggtcggaatcactgatagaaaaaagattttctctctgattgctaagcaa
aaaaaaattagtttcaatcagcgattccgaccttcctattattccacCTC
CAAAGAAGGTGCCAAAATTaaaagagggatgtcaacattagaccaaattA
CGGTAATATCGATCCGCAACAAAAAGTTTACtgattcttatgaaaaatag
ggtagaaaatgattttggaaaatccagtttggaaacaacaaaaactcAAA
CAGGCATCATGTTCCAAACTGAAACTACatccacaaaaaaacaaaaccta
tGTGCGGGCTCCAAACAAATGGgaataataaaaaattgttagatattttt
attacattttattgggataagaaaatataaatatataCCTTGGAAATTCC
AGAAAATGAtctcaaaaatttagaaaatcaaggcCCTCTCAGGAAAATTT
CCAAGTCAATAACCCTTGTACAATTTAAATTGCTATACATAGCCCAAATG
GCATTATACATTATTGTAATAATTTGTCAAGTTCTTTTCCTAGCCTTTTA
TTTTGATCTTTAGCTCTCttattctaatattttttatgataattatcCAA
TCATTAATAGGAATGAGCTTCAACTGCAAACCATATTATATTTTAgccct
aaaatattcttatgagATTGAAATAGAAGAGCAAGGAATTTTTCTAGTGT
GAATAAGAGAAAGAGAACAAAAACTGGGCTAATGCAAGCCAGACTTCACT
GTAATTATAGATTCCAAAGaggatttgaaaaattaaaactgaaCGAAAAA
TAAtgaagttttgttttttaggccaaaaattattgttgttaattttgttt
ttgatttggaaaatttttgctttctttgtgactcttataaaatgttttta
taaaaaacttaTAAAAAGTGTGCACTATTTGAAAACActgagaaaatttt
taaaagacacAGAGAACTAGAAATGCAGATGTTTCAGGATTCAACAAAAT
TCTACTGAAATTTGTATCACAGAATAAGACATACAAATCTGAAAACTTGA
GTGAGATGTAGCCCTCCTGCCTGGTTAAACATCAAAAACGTAAATAACTT
TGTACTTGTAAAGGTACACTTATCCTGTTGCAATTGGTTCCAAAGTGTGT
CACTTTCAAGCTCACCAATTAGATTTGGGTAAAACTTAGAAATTAAGCTA
GCAACTTGAATGAAGACCTCTTTATTACACACTTTTTTGTTCACAAGAAT
ACATTTAATAATATTTATTgactaaaaaattaagaatatggtaagaataa
gCTATTTTAGAGTATTTCGCTGgttaaattgccaattattcccCATCAAT
GATAAAGAGTTCTACAAAATTAACTATACTACATGCTAGATTTTGGCTGG
GCTTGGAtccaaacctaagaataccgtaagaatattccAGGATGACTTTT
CTAAAATGtaaaaaggttaagaatattcatgatatgatgaattggaaaaa
cactattcttataaaaaatacctgTAATGTCTATTAACTCTTTCTTATCT
AATATTTCTCAATATTTAGCTTGTTCTTGTTCTCGGTGACCTGCACATCC
CACATCGAAAAAGTGGATTACCAGTAAAGTTCAAGAAGTTATTGGTcagt
atttttttcattctggAGCTACCTTATGGCCCAGGGGGATTGGGGTTTta
gtactaaaatctcagacatatatgagtactaaaaggcttttcattttttt
tgcataccGCCACCACTACATTTTAGAGAATAAAATGTCTCAAATTTTAA
TCTGGATACCAGGTATTTTAGTAGATAAAAGATAAAaggatttttaagtt
ttttgggtGAACACCACATCTCTAAACATCATAATGTCTGATATTTCAGT
ACTTACCCCCTCCCTGTATGGCCATGAATAAAGCTCTCTTTTGTCTGTCA
AAGGCCATAGAGGTAACTTTCATCACCACAACACCTTGTGTTTTTGAGCC
TGCTTAACCCATAATGCTTTGAAGCCATAATATAGCTGATAATATAGTGG
TGTAATGTCTAGCATTAGTTGTGATTCTTCGTTGgagttttcttttaaat
gaGTATTGTATAATCTAATTCCTCACCCTAAAACTAGCGATGTCTACTCA
AGTCCAACATCTTACTGGGCATTTTGTCTTATAGCAAGATTAAACTTATA
TTTCAAGTCATGATTACATCACCTTACTTTCAAAGCAGCTttccatttca
ttttctttttcttttatctcgTCATAATTGCAATTCACATGTTACTGTAt
aatgaagcatttttaaacCTTAGGTACCAGGCAAAATTCAACACATCTTA
TGTACAGGAAACCTTTGTACCAAAGAATCATATGACTATTTGAAAACATT
AGCAAGTGACGTCCACGTTGTTCGTGGTGATTTTGAAGAGGTAAGTTATC
ATAAATTTTGGTGATATTATGATAGTGTAATGAGTTTATGTAAAAATTAG
ATTTCGACAATTCTTTCAACCCCTTgtttatttggggggggggtggttAT
TATCAAAGTCCATGGTTTAGAAAATAGACTTTAAGACCATACCCCCTCTN
ggggggggggggtttattATCAAAGTCCATGGTTTAGAAAATAGACTTTA
AGACCATACCCCCTCTTTTATGAAGCATTCAACTAAATTGTATAGGCTAA
AGTCCGATACATTAGATGATGGAATGAAATTGTTCAGTTCCAATCTATGC
AAGCTTAATTCAAAATAATGCCATTTTAGGGCCTCTGGAGTATTTAAGTG
TCTTcctaattacaaaaaaaatatttataaaagtaTGAACTcttgacgtt
ttttgttttaaagttattAGCAAATGTAATTATCTCATAATGGAAAAATG
CACTTAAAGTTGTATTTGATTGTTCTTTTTTGCTGACATACACAGATTCT
TTATTATCGTTTACGTACAGAATAATTTTTCTGTATGCTTTTTAACTAGA
ACATAACATACCCAGAACAGAAAGTTGTGAGTGTTGGACCTTTCCGTATT
GGTTTATGTCATGGCCATCAAATTGTTCCATGGGGCGATGCGGAATCGCT
TGCTATGGTAATATCAAATTTCTTCTTTATTCTCTAAAGGCTGTTTATAG
TTGTAGACAAGATTACAGAAGAGTCGTATAACAAATACTTAAAAGTGAAG
CGTCTCACCTGTCATCTGTCCCAGCAACTTAGAGTTTTCGGACATTttga
gggggtttatctaaagaatcctgcattactaaaaatagacaaaaagaacg
acaaatttcataaaaaacgacatattttgccgtccacgaccccgaccgaa
agtgactgtaccacccctgtACCAACGATTCATTCCCTttcgtttatcac
gggaattaactacatgtggtctaaaagaacgacaaattacgcatgcgtgt
tacaatgcaggatcctttagaggaacagactgttGTGTTGGTTTTATTAG
TTAGTTTCCCACTAACACCAGTCTAAGTTGAGAAAAAATCATCACCGCGA
CCATCTTAACAGAAAATTTTGTTGTtagcaaaaatcaaaatctggGTCAA
AGTTCATATAATTAGGTCATTTTACTGTTTGAAGAAGTTACTCTTACCTT
ATGTACATAATTAAGCACACTTTGTATTTATGTTTTTAGGTTCAAAGGCA
GTTGGATGTTGATATTTTGATCACAGGGCATACACACAGAGTAAGTGCTC
TGATATATTTTGTGTCTTTCGAATTTCTTAGCTCACAATATTGGCTCATA
AATTTGTAAACTTCGTTAATATATTTAGATAAGCTTATGAACCTCGAGAT
CTGTCGTGAACATGTTGAAAGGTTGACAACATTTAGGTCTGTGTTTTCAG
GGTTTATAACAGGCTAAATAAAtgattaaactttttcttttcttacagTT
CGAAGCATACGAGCACGAGGGAAAATTCTACGTCAACCCAGGGTCTGCAA
CTGGTGCATACAATCCTCTAGATTTGTAAGTTTTCCTTTTATCTATCACC
CTCTTGATTTGCAAGTCTGGTTTTAATCAATCAAAACTTCGGCCTAAACA
TACATACAATACACTGGctttctacacgtttttttataagaacaaacaat
ataaaaacataaggcttcgattgccaaaatgtcaagaacaagttaaacac
tcaatttcttaggaaaatggacaaaaatctcaaaaaatggcaaaataaga
acatgcttagaacatttttaggcttaaaacttaaaaagttacgaaaatcc
gaaggcttcaaaaatgttcaatgttcttataaaaaaacgtgtactataTT
TCtaaacttcagttgagctagagcTAGAATATGACAAtatgtgtgtctgt
gtgtctgtctgtcacaaagaCATTGGGGCAGCCTGAGCTCTTCAAAAACG
GTCgcgtttgactgaaatttggcacacttgttcattggtgATTATctgtt
tgtttgatttttcatttttcaaaagttttgattttcgaGGCTTGGGCAAT
AATCTTTGGTTTGTTTGGCTACTATCGGGCCTTTGAATAATCTGAAGcta
tctgaagttgagcccattGCGTTGGGCACGTTCGACTGTTAATAATATGA
CCTAGAGAAGAGGAACATTTTCGACgaactttttgaaacaaaagatACAT
TCCCTAATATTCATTGTGATAACTTTTGGATGGACCGATCGTTGAATCGT
TTCTTATGCTAAAGATGAGACCAGTGTATTCCATAAAGTTTATCGTATAA
AATCTGAAAAGTTCGCTGgttgtactcttaggttccaaataaacgctccc
ccccccgcttgtttaTTTTTCGGACCTTATAAGgaccccgtttattaatt
tttaagaattttttcagctttcaaaaGAAGGTCCttctgctctaaatagc
ctgcttttagcctatatttaccttatttttgggctttcacaagtacaatt
tccaacccccggcaattaggccccccggcaattaggcccccccggcaatt
aggcccccccggcaattaggcccccccggcaattaggcccccccggcaat
taggcccccccggcaattaggcccccccggcaattaggcccccccggcaa
ttaggcccccccggcaattaggtccccccggcaattaggtccccccgttt
attaaaattttggaaattttccaccccctccccctctcgtttatttggaa
cctaagattACCTACATTGTAAGTAAGAAGATAAATACCCGACTTTCATT
TTTGCTTTCACTCTTTACAAATCTTTTCTTTGACCTGTCTTTTAATcgct
atttctttttctttagaaacatCGTCCCCTCTTTTGTGTTGATGGATATA
CAAGCAGAAACTGTAGTCGCATATGTCTACCAGCTTCATGGAGATGACGT
CAAAGTCGACCGAATCGAATACAAAAAGACGGCAGTCGCCTCGTAAAGTA
CCTTATAATATTTTCTGTCACTTTTTTATCACTCtgtaattttttgtatt
tttcattttgaccgCACTTCTTTTCAACTCTCTGCGCTTCATATGTAATT
ATTACCAAGTATTATCAGAATGAAGGAACCTCGCAGGTTTCATTAGACCG
TTTTGTTTTGTCGATCAGCTCTTACAAGCGTGAACCTAGTATGATGAGAT
GAAGGAACCCCATCTCTGATTATCTTAGTTTTTAGGGTTCTAGCTCAAAA
CTTATCTTCAAGAATTATCTTAATaccattttaagtttttgttgttttta
gtcTCTGTGGGTTATACAAtcaatttaagatttttttcgtatttttgtaa
tttaaaaagatttattttaattcattttcacAACCCTTCATACAGTAATt
tcattctaaaattttcatttttatcataaTGATCAACAGTAAAATGTGTT
TGAAAAACTGGTTAAAACTGCTGtagatttttggacctacctccgggtac
cccggtggaggtcctttaaattaacccatgtccgtccgtccgttcgttcg
ttcgtctgttgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNctactccccttccctcttcccccatcaacaatcaatgataaga
tttaatgtgttatgcatttttgcaaagcgctatatcgtctgactgattgt
tttcatttttatccttattgccttattattcagctttcatcatcaggtag
gtccattcagcatgttgcttgtttttttgtaacttttcaaaaagaaatag
gATCCTGTTTGTTACTGTAtgaaaacttaaattatatctTAGAAAGAACA
AATTAATCCaaagaatttaaatttgaaaacaaattcgATCCTGTTACTCT
GtttttgagagattttcaaacctTTCTTAGATTTAACCACTGGGTACTGC
TTTTCTtaagttttcttatttttcattgtTAGAAGCGTTCATAAAACGCT
CATTTCGTTCTATGAGACTTTTTTACTTCTTCTCGGATTTTTCCTGAAAT
TTATAAACAACTGCAAATGTTTTCTTGCCGATAATTTCTTCCGAGCAAAG
ACTTATAACCAAAACAAGACGTCTAACCATTGTTTCACCTTAGTTAGATC
TCATCAGATAGCGTGTTATTGTTCTTCTAATACAATAAACTATATNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTTCTTCTAATACAATAAACTATATC
TACAGGGTTTCCGCATAATTAGTGAACGAAAACAATCAATTTTGCCGCGT
cagcaataaaaacaattgttttGCCGATTCAGCAAAAATAATCAATGTTA
CTAATTTCTCAGAATTTtcgtcgaaattttcaaaatggctgaagcagaaa
aactttgattagaaaattagaaactCTGACTTCGTTCTAATCTAAATGAN
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AATGCCTGTTTGATcatttcacttttttatgacaccttttgataaaaatt
acagtaccataaaaatgtgaaaaatttaatgaaaaatgatgggattgggc
tcttccagaaaaaatccgttcatggggggtggaggatatattattttttt
catgaattacccctggacattttaatttttaaccccctggacacgggtta
tacccctggacaaacatcaaatcaaccccgtggacacaaaaaattacccc
tgtacattggaatttaccccctggacattgcaattctttggtattttttc
aatacccctggacaattcatcctccaccccccatgaacggattttttctg
gaagagcccattgtttTGACTCATCACTTCCTATTTAGAAAATAAGTacc
tttaagggaactaattttgggaaTTTAGGCGAAATTCGCCAAAGTTCGTT
CCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNttccttgcctaaataaccctgaaattcatcaaaattgctcaa
aataaggcaaaatagaagagatttacgctgtcattcgccaaaattaaaaa
aattcactattcgccGAAATAAGTTccgaccaaaattaaaaaaatttagg
atatttgctgcctgccaaaattagttcccaccagaAAAGGTTCCCTcgat
ttgtaaaaaaaatgtctGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNtcttttgaaaatagatgacctgattta
attttttctgaggaTTAATTGACGATTGAAAATGATACTTAGATGACAAA
GTATAGACAATAAGTCCCTTACGCTACAATAAAATTGTTAcacaaacaaa
taattttggtaTTAACAGTCAGAGCATTTCACAATATTAAGAACTACCTC
CAAAATTACctctcaaaattaatttcattatgatGACTGACTGATTAATT
TATATAGTTTGCTTCTGTTTGCTTTctataatttgttaaaattacCTAGC
CAAAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAA
TTCATCTATATAAATTTGTTCAAGATTATCTACAAGCAATACTTTTTTCA
TTTGCCAGAAACCAGTCTTGCCAAATTAAAAATCTGGCACACNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNAGTTTGTAGCCTGCTGTGAGCTAGTCTCTAGTACATTATCCAAATTT
TAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCCAGTGACAAA
TTGATTCGGTGTTAtaataaaatagccagaaaattaaagttatgatTCAA
AAACCATCATtgcgacaaaatatttttcagcattggCAATTGGGTGTTAG
ATATGTTgtatatatttcaattctaatCACAATACATCTTGTTTGTTGAA
GATATCCTTGATTTGAAGTCGTCCATCTGTTTTTGAAATGCCTTTTCAAG
GAGCAGGATATATACAGAATTTATGGTTGactattttgatgtttttttat
attatatatattttacacctaaataaattgaaaaaagttataTCGAAATC
AAATGAGCAATATTAAACCGAATACTTTTCATCTGAACAAACATAAAGCC
AGGTAAACTAACTGAAAACCTTAATTTCCAACAAAACACAGTCTGACAGT
TCACAAAAAATAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCT
TGTCGGCAACTAACGTGCGGatcaaaggaaatttatttttattgttcgaa
caataagataattttgcataattatgcGCTTAGACGTCTTGTTTTGGTTA
TAAGTCTTTGTTCCGAGTCGAATTAAAGGCTTTGCTGCCTAAGGCTCTGT
AGCCAGTACAAGACTCGTACATGTTAAGAACCTTTTTTACATGTTTCAGA
AGAAGGTTAAGGGATATTATTTAGATCTTGACGTTTATAATTATGGGGGA
GACGAACAAGCATGTTAATTTCTTGGTATAAATCTATATTCtacaaaaaa
attgtatatttttttgaatggtTATAAAATTTGATAACTAAGTACAAtct
atcattttttatttttaggctAACTATCTCTTACTACTTGAGCGGCTGCT
ATGACCTTTATGTGACCGAATTGAAGAACTATTTTGAATATGTTTTGTAC
TCATTCCAGC

Coding sequence (CDS) from alignment at scaffold_70:92192..109001+

>TCONS_00072059 ID=TCONS_00072059|Name=TCONS_00072059|organism=Clytia hemisphaerica|type=CDS|length=5208bp|location=Sequence derived from alignment at scaffold_70:92192..109001+ (Clytia hemisphaerica)
ATGGTTCTTGTTCTTGTTCTCGGTGACCTGCACATCCCACATCGAAAAAG
TGGATTACCAGTAAAGTTCAAGAAGTTATTGGTACCAGGCAAAATTCAAC
ACATCTTATGTACAGGAAACCTTTGTACCAAAGAATCATATGACTATTTG
AAAACATTAGCAAGTGACGTCCACGTTGTTCGTGGTGATTTTGAAGAGAA
CATAACATACCCAGAACAGAAAGTTGTGAGTGTTGGACCTTTCCGTATTG
GTTTATGTCATGGCCATCAAATTGTTCCATGGGGCGATGCGGAATCGCTT
GCTATGGTTCAAAGGCAGTTGGATGTTGATATTTTGATCACAGGGCATAC
ACACAGATTCGAAGCATACGAGCACGAGGGAAAATTCTACGTCAACCCAG
GGTCTGCAACTGGTGCATACAATCCTCTAGATTTaaacatCGTCCCCTCT
TTTGTGTTGATGGATATACAAGCAGAAACTGTAGTCGCATATGTCTACCA
GCTTCATGGAGATGACGTCAAAGTCGACCGAATCGAATACAAAAAGACGG
CAGTCGCCTCgctAACTATCTCTTACTACTTGAGCGGCTGCTATGACCTT
TATGTGACCGAATTGAAGAACTATTTTGAATATGTTTTGTACTCATTCCA
GATGGTTCTTGTTCTTGTTCTCGGTGACCTGCACATCCCACATCGAAAAA
GTGGATTACCAGTAAAGTTCAAGAAGTTATTGGTACCAGGCAAAATTCAA
CACATCTTATGTACAGGAAACCTTTGTACCAAAGAATCATATGACTATTT
GAAAACATTAGCAAGTGACGTCCACGTTGTTCGTGGTGATTTTGAAGAGA
ACATAACATACCCAGAACAGAAAGTTGTGAGTGTTGGACCTTTCCGTATT
GGTTTATGTCATGGCCATCAAATTGTTCCATGGGGCGATGCGGAATCGCT
TGCTATGGTTCAAAGGCAGTTGGATGTTGATATTTTGATCACAGGGCATA
CACACAGATTCGAAGCATACGAGCACGAGGGAAAATTCTACGTCAACCCA
GGGTCTGCAACTGGTGCATACAATCCTCTAGATTTaaacatCGTCCCCTC
TTTTGTGTTGATGGATATACAAGCAGAAACTGTAGTCGCATATGTCTACC
AGCTTCATGGAGATGACGTCAAAGTCGACCGAATCGAATACAAAAAGACG
GCAGTCGCCTCgctAACTATCTCTTACTACTTGAGCGGCTGCTATGACCT
TTATGTGACCGAATTGAAGAACTATTTTGAATATGTTTTGTACTCATTCC
AGATGGTTCTTGTTCTTGTTCTCGGTGACCTGCACATCCCACATCGAAAA
AGTGGATTACCAGTAAAGTTCAAGAAGTTATTGGTACCAGGCAAAATTCA
ACACATCTTATGTACAGGAAACCTTTGTACCAAAGAATCATATGACTATT
TGAAAACATTAGCAAGTGACGTCCACGTTGTTCGTGGTGATTTTGAAGAG
AACATAACATACCCAGAACAGAAAGTTGTGAGTGTTGGACCTTTCCGTAT
TGGTTTATGTCATGGCCATCAAATTGTTCCATGGGGCGATGCGGAATCGC
TTGCTATGGTTCAAAGGCAGTTGGATGTTGATATTTTGATCACAGGGCAT
ACACACAGATTCGAAGCATACGAGCACGAGGGAAAATTCTACGTCAACCC
AGGGTCTGCAACTGGTGCATACAATCCTCTAGATTTaaacatCGTCCCCT
CTTTTGTGTTGATGGATATACAAGCAGAAACTGTAGTCGCATATGTCTAC
CAGCTTCATGGAGATGACGTCAAAGTCGACCGAATCGAATACAAAAAGAC
GGCAGTCGCCTCgctAACTATCTCTTACTACTTGAGCGGCTGCTATGACC
TTTATGTGACCGAATTGAAGAACTATTTTGAATATGTTTTGTACTCATTC
CAGATGGTTCTTGTTCTTGTTCTCGGTGACCTGCACATCCCACATCGAAA
AAGTGGATTACCAGTAAAGTTCAAGAAGTTATTGGTACCAGGCAAAATTC
AACACATCTTATGTACAGGAAACCTTTGTACCAAAGAATCATATGACTAT
TTGAAAACATTAGCAAGTGACGTCCACGTTGTTCGTGGTGATTTTGAAGA
GAACATAACATACCCAGAACAGAAAGTTGTGAGTGTTGGACCTTTCCGTA
TTGGTTTATGTCATGGCCATCAAATTGTTCCATGGGGCGATGCGGAATCG
CTTGCTATGGTTCAAAGGCAGTTGGATGTTGATATTTTGATCACAGGGCA
TACACACAGATTCGAAGCATACGAGCACGAGGGAAAATTCTACGTCAACC
CAGGGTCTGCAACTGGTGCATACAATCCTCTAGATTTaaacatCGTCCCC
TCTTTTGTGTTGATGGATATACAAGCAGAAACTGTAGTCGCATATGTCTA
CCAGCTTCATGGAGATGACGTCAAAGTCGACCGAATCGAATACAAAAAGA
CGGCAGTCGCCTCgctAACTATCTCTTACTACTTGAGCGGCTGCTATGAC
CTTTATGTGACCGAATTGAAGAACTATTTTGAATATGTTTTGTACTCATT
CCAGATGGTTCTTGTTCTTGTTCTCGGTGACCTGCACATCCCACATCGAA
AAAGTGGATTACCAGTAAAGTTCAAGAAGTTATTGGTACCAGGCAAAATT
CAACACATCTTATGTACAGGAAACCTTTGTACCAAAGAATCATATGACTA
TTTGAAAACATTAGCAAGTGACGTCCACGTTGTTCGTGGTGATTTTGAAG
AGAACATAACATACCCAGAACAGAAAGTTGTGAGTGTTGGACCTTTCCGT
ATTGGTTTATGTCATGGCCATCAAATTGTTCCATGGGGCGATGCGGAATC
GCTTGCTATGGTTCAAAGGCAGTTGGATGTTGATATTTTGATCACAGGGC
ATACACACAGATTCGAAGCATACGAGCACGAGGGAAAATTCTACGTCAAC
CCAGGGTCTGCAACTGGTGCATACAATCCTCTAGATTTaaacatCGTCCC
CTCTTTTGTGTTGATGGATATACAAGCAGAAACTGTAGTCGCATATGTCT
ACCAGCTTCATGGAGATGACGTCAAAGTCGACCGAATCGAATACAAAAAG
ACGGCAGTCGCCTCgctAACTATCTCTTACTACTTGAGCGGCTGCTATGA
CCTTTATGTGACCGAATTGAAGAACTATTTTGAATATGTTTTGTACTCAT
TCCAGATGGTTCTTGTTCTTGTTCTCGGTGACCTGCACATCCCACATCGA
AAAAGTGGATTACCAGTAAAGTTCAAGAAGTTATTGGTACCAGGCAAAAT
TCAACACATCTTATGTACAGGAAACCTTTGTACCAAAGAATCATATGACT
ATTTGAAAACATTAGCAAGTGACGTCCACGTTGTTCGTGGTGATTTTGAA
GAGAACATAACATACCCAGAACAGAAAGTTGTGAGTGTTGGACCTTTCCG
TATTGGTTTATGTCATGGCCATCAAATTGTTCCATGGGGCGATGCGGAAT
CGCTTGCTATGGTTCAAAGGCAGTTGGATGTTGATATTTTGATCACAGGG
CATACACACAGATTCGAAGCATACGAGCACGAGGGAAAATTCTACGTCAA
CCCAGGGTCTGCAACTGGTGCATACAATCCTCTAGATTTaaacatCGTCC
CCTCTTTTGTGTTGATGGATATACAAGCAGAAACTGTAGTCGCATATGTC
TACCAGCTTCATGGAGATGACGTCAAAGTCGACCGAATCGAATACAAAAA
GACGGCAGTCGCCTCgctAACTATCTCTTACTACTTGAGCGGCTGCTATG
ACCTTTATGTGACCGAATTGAAGAACTATTTTGAATATGTTTTGTACTCA
TTCCAGATGGTTCTTGTTCTTGTTCTCGGTGACCTGCACATCCCACATCG
AAAAAGTGGATTACCAGTAAAGTTCAAGAAGTTATTGGTACCAGGCAAAA
TTCAACACATCTTATGTACAGGAAACCTTTGTACCAAAGAATCATATGAC
TATTTGAAAACATTAGCAAGTGACGTCCACGTTGTTCGTGGTGATTTTGA
AGAGAACATAACATACCCAGAACAGAAAGTTGTGAGTGTTGGACCTTTCC
GTATTGGTTTATGTCATGGCCATCAAATTGTTCCATGGGGCGATGCGGAA
TCGCTTGCTATGGTTCAAAGGCAGTTGGATGTTGATATTTTGATCACAGG
GCATACACACAGATTCGAAGCATACGAGCACGAGGGAAAATTCTACGTCA
ACCCAGGGTCTGCAACTGGTGCATACAATCCTCTAGATTTaaacatCGTC
CCCTCTTTTGTGTTGATGGATATACAAGCAGAAACTGTAGTCGCATATGT
CTACCAGCTTCATGGAGATGACGTCAAAGTCGACCGAATCGAATACAAAA
AGACGGCAGTCGCCTCgctAACTATCTCTTACTACTTGAGCGGCTGCTAT
GACCTTTATGTGACCGAATTGAAGAACTATTTTGAATATGTTTTGTACTC
ATTCCAGATGGTTCTTGTTCTTGTTCTCGGTGACCTGCACATCCCACATC
GAAAAAGTGGATTACCAGTAAAGTTCAAGAAGTTATTGGTACCAGGCAAA
ATTCAACACATCTTATGTACAGGAAACCTTTGTACCAAAGAATCATATGA
CTATTTGAAAACATTAGCAAGTGACGTCCACGTTGTTCGTGGTGATTTTG
AAGAGAACATAACATACCCAGAACAGAAAGTTGTGAGTGTTGGACCTTTC
CGTATTGGTTTATGTCATGGCCATCAAATTGTTCCATGGGGCGATGCGGA
ATCGCTTGCTATGGTTCAAAGGCAGTTGGATGTTGATATTTTGATCACAG
GGCATACACACAGATTCGAAGCATACGAGCACGAGGGAAAATTCTACGTC
AACCCAGGGTCTGCAACTGGTGCATACAATCCTCTAGATTTaaacatCGT
CCCCTCTTTTGTGTTGATGGATATACAAGCAGAAACTGTAGTCGCATATG
TCTACCAGCTTCATGGAGATGACGTCAAAGTCGACCGAATCGAATACAAA
AAGACGGCAGTCGCCTCgctAACTATCTCTTACTACTTGAGCGGCTGCTA
TGACCTTTATGTGACCGAATTGAAGAACTATTTTGAATATGTTTTGTACT
CATTCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044754XLOC_044754Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072059-exon-scaffold_70-1491911889:92192..92330TCONS_00072059-exon-scaffold_70-1491911889:92192..92330Clytia hemisphaericaexon
TCONS_00072059-exon-scaffold_70-1510915933:92192..92330TCONS_00072059-exon-scaffold_70-1510915933:92192..92330Clytia hemisphaericaexon
TCONS_00072059-exon-scaffold_70-1575043694:92192..92330TCONS_00072059-exon-scaffold_70-1575043694:92192..92330Clytia hemisphaericaexon
TCONS_00072059-exon-scaffold_70-1491911889:97711..97785TCONS_00072059-exon-scaffold_70-1491911889:97711..97785Clytia hemisphaericaexon
TCONS_00072059-exon-scaffold_70-1510915933:97711..97785TCONS_00072059-exon-scaffold_70-1510915933:97711..97785Clytia hemisphaericaexon
TCONS_00072059-exon-scaffold_70-1575043694:97711..97785TCONS_00072059-exon-scaffold_70-1575043694:97711..97785Clytia hemisphaericaexon
TCONS_00072059-exon-scaffold_70-1491911889:98465..98581TCONS_00072059-exon-scaffold_70-1491911889:98465..98581Clytia hemisphaericaexon
TCONS_00072059-exon-scaffold_70-1510915933:98465..98581TCONS_00072059-exon-scaffold_70-1510915933:98465..98581Clytia hemisphaericaexon
TCONS_00072059-exon-scaffold_70-1575043694:98465..98581TCONS_00072059-exon-scaffold_70-1575043694:98465..98581Clytia hemisphaericaexon
TCONS_00072059-exon-scaffold_70-1491911889:99141..99248TCONS_00072059-exon-scaffold_70-1491911889:99141..99248Clytia hemisphaericaexon
TCONS_00072059-exon-scaffold_70-1510915933:99141..99248TCONS_00072059-exon-scaffold_70-1510915933:99141..99248Clytia hemisphaericaexon
TCONS_00072059-exon-scaffold_70-1575043694:99141..99248TCONS_00072059-exon-scaffold_70-1575043694:99141..99248Clytia hemisphaericaexon
TCONS_00072059-exon-scaffold_70-1491911889:99831..99881TCONS_00072059-exon-scaffold_70-1491911889:99831..99881Clytia hemisphaericaexon
TCONS_00072059-exon-scaffold_70-1510915933:99831..99881TCONS_00072059-exon-scaffold_70-1510915933:99831..99881Clytia hemisphaericaexon
TCONS_00072059-exon-scaffold_70-1575043694:99831..99881TCONS_00072059-exon-scaffold_70-1575043694:99831..99881Clytia hemisphaericaexon
TCONS_00072059-exon-scaffold_70-1491911889:100090..100166TCONS_00072059-exon-scaffold_70-1491911889:100090..100166Clytia hemisphaericaexon
TCONS_00072059-exon-scaffold_70-1510915933:100090..100166TCONS_00072059-exon-scaffold_70-1510915933:100090..100166Clytia hemisphaericaexon
TCONS_00072059-exon-scaffold_70-1575043694:100090..100166TCONS_00072059-exon-scaffold_70-1575043694:100090..100166Clytia hemisphaericaexon
TCONS_00072059-exon-scaffold_70-1491911889:101508..101633TCONS_00072059-exon-scaffold_70-1491911889:101508..101633Clytia hemisphaericaexon
TCONS_00072059-exon-scaffold_70-1510915933:101508..101633TCONS_00072059-exon-scaffold_70-1510915933:101508..101633Clytia hemisphaericaexon
TCONS_00072059-exon-scaffold_70-1575043694:101508..101633TCONS_00072059-exon-scaffold_70-1575043694:101508..101633Clytia hemisphaericaexon
TCONS_00072059-exon-scaffold_70-1491911889:108910..109001TCONS_00072059-exon-scaffold_70-1491911889:108910..109001Clytia hemisphaericaexon
TCONS_00072059-exon-scaffold_70-1510915933:108910..109001TCONS_00072059-exon-scaffold_70-1510915933:108910..109001Clytia hemisphaericaexon
TCONS_00072059-exon-scaffold_70-1575043694:108910..109001TCONS_00072059-exon-scaffold_70-1575043694:108910..109001Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072059-proteinTCONS_00072059-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_70supercontigscaffold_70:92192..109001 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
233.445	248.032	239.024	233.828	71.8293	67.8853	99.6916	95.5546	137.95	127.112	102.22	107.197	89.8657	79.9095	122.235	139.291	117.451	111.008	68.6678	91.8672	64.8895	64.4821	89.519	91.0867	70.2868	47.0102	79.152	61.1334	92.5269	91.4287
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR024654Calcineurin-like_PHP_lpxH
IPR000979Phosphodiesterase_MJ0936/Vps29
IPR029052Metallo-depent_PP-like
Blast
[Close]
BLAST of TCONS_00072059 vs. Swiss-Prot (Human)
Match: VPS29 (Vacuolar protein sorting-associated protein 29 OS=Homo sapiens GN=VPS29 PE=1 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 7.606e-110
Identity = 147/181 (81.22%), Postives = 165/181 (91.16%), Query Frame = 2 
Query:  137 VLVLVLGDLHIPHRKSGLPVKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLASDVHVVRGDFEENITYPEQKVVSVGPFRIGLCHGHQIVPWGDAESLAMVQRQLDVDILITGHTHRFEAYEHEGKFYVNPGSATGAYNPLDLNIVPSFVLMDIQAETVVAYVYQLHGDDVKVDRIEYKK 679
            +LVLVLGDLHIPHR + LP KFKKLLVPGKIQHILCTGNLCTKESYDYLKTLA DVH+VRGDF+EN+ YPEQKVV+VG F+IGL HGHQ++PWGD  SLA++QRQ DVDILI+GHTH+FEA+EHE KFY+NPGSATGAYN L+ NI+PSFVLMDIQA TVV YVYQL GDDVKV+RIEYKK
Sbjct:    1 MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKK 181
The following BLAST results are available for this feature:
BLAST of TCONS_00072059 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VPS297.606e-11081.22Vacuolar protein sorting-associated protein 29 OS=... [more]
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