TCONS_00072055 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072055
Unique NameTCONS_00072055
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length532

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072055 ID=TCONS_00072055|Name=TCONS_00072055|organism=Clytia hemisphaerica|type=transcript|length=532bp
taatatattgagaattttggttattttaacgtttttcaagatttaaagtt
ctggcgagaaagtcgatttttggctatttttttaatttaatcgaatattt
caatttgggaggggttggcagacttccaggctatattctgagtctNTTGA
CGTAATTTGAGTCGAAATTGTTCAAGTCTTTCAAGCGTTTCATCTAACTG
TGGTATTGGACAACCATCCACTTGAACTTCATCAACGATATCGGTTACTT
GCTCGGACATGAGCATGACATCATTCATTACGGATGTCATTTTGGAAGAG
CAATTTAACGTTCCAGCTCTGGTGGAATCGATGGAAGATACGATGTCTTC
AAGTGAAGAGGAATGGTCTTCGAGTAATTGCAAAGTAGATAGTAAGGATA
ATTGATGTACCTTAACAgatttgatgattggttgaagtGTGAGTTGATCG
GCTaaggatcttgaagtgagttgatcggctgaggatcttgaagtgagttg
atcggctgaggatcttgaagtgagttgatcNN
Run BLAST on NCBI

protein sequence of TCONS_00072055-protein

>TCONS_00072055-protein ID=TCONS_00072055-protein|Name=TCONS_00072055-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
DQLTSRSSADQLTSRSSADQLTSRSLADQLTLQPIIKSVKVHQLSLLSTL
QLLEDHSSSLEDIVSSIDSTRAGTLNCSSKMTSVMNDVMLMSEQVTDIVD
EVQVDGCPIPQLDETLERLEQFRLKLRQXTQNIAWKSANPSQIEIFD
Run BLAST on NCBI

transcript from alignment at scaffold_7:90423..90954

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072055 ID=TCONS_00072055|Name=TCONS_00072055|organism=Clytia hemisphaerica|type=transcript|length=532bp|location=Sequence derived from alignment at scaffold_7:90423..90954 (Clytia hemisphaerica)
NNgatcaactcacttcaagatcctcagccgatcaactcacttcaagatcc
tcagccgatcaactcacttcaagatccttAGCCGATCAACTCACacttca
accaatcatcaaatcTGTTAAGGTACATCAATTATCCTTACTATCTACTT
TGCAATTACTCGAAGACCATTCCTCTTCACTTGAAGACATCGTATCTTCC
ATCGATTCCACCAGAGCTGGAACGTTAAATTGCTCTTCCAAAATGACATC
CGTAATGAATGATGTCATGCTCATGTCCGAGCAAGTAACCGATATCGTTG
ATGAAGTTCAAGTGGATGGTTGTCCAATACCACAGTTAGATGAAACGCTT
GAAAGACTTGAACAATTTCGACTCAAATTACGTCAANagactcagaatat
agcctggaagtctgccaacccctcccaaattgaaatattcgattaaatta
aaaaaatagccaaaaatcgactttctcgccagaactttaaatcttgaaaa
acgttaaaataaccaaaattctcaatatatta

Coding sequence (CDS) from alignment at scaffold_7:90423..90954

>TCONS_00072055 ID=TCONS_00072055|Name=TCONS_00072055|organism=Clytia hemisphaerica|type=CDS|length=444bp|location=Sequence derived from alignment at scaffold_7:90423..90954 (Clytia hemisphaerica)
gatcaactcacttcaagatcctcagccgatcaactcacttcaagatcctc
agccgatcaactcacttcaagatccttAGCCGATCAACTCACacttcaac
caatcatcaaatcTGTTAAGGTACATCAATTATCCTTACTATCTACTTTG
CAATTACTCGAAGACCATTCCTCTTCACTTGAAGACATCGTATCTTCCAT
CGATTCCACCAGAGCTGGAACGTTAAATTGCTCTTCCAAAATGACATCCG
TAATGAATGATGTCATGCTCATGTCCGAGCAAGTAACCGATATCGTTGAT
GAAGTTCAAGTGGATGGTTGTCCAATACCACAGTTAGATGAAACGCTTGA
AAGACTTGAACAATTTCGACTCAAATTACGTCAANagactcagaatatag
cctggaagtctgccaacccctcccaaattgaaatattcgattaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044751XLOC_044751Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072055-proteinTCONS_00072055-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072055-exon-scaffold_7-1491911889:90423..90954TCONS_00072055-exon-scaffold_7-1491911889:90423..90954Clytia hemisphaericaexon
TCONS_00072055-exon-scaffold_7-1510915933:90423..90954TCONS_00072055-exon-scaffold_7-1510915933:90423..90954Clytia hemisphaericaexon
TCONS_00072055-exon-scaffold_7-1575043694:90423..90954TCONS_00072055-exon-scaffold_7-1575043694:90423..90954Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:90423..90954 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.62174	4.51384	5.00139	3.04528	0.461009	0.930438	0.357871	0.410051	1.00626	1.7393	0.340153	1.3568	2.04231	1.33749	1.67108	2.32678	1.48518	2.01078	0.490499	0.503737	2.29654	1.27503	0.358109	2.48466	3.13059	2.00162	0.742464	0.21851	0	0.605402
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072055 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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