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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072053 ID=TCONS_00072053|Name=TCONS_00072053|organism=Clytia hemisphaerica|type=transcript|length=870bp
CGAGGAAAAAACGTTAGCATTTATTTGATCTCTGCTTATGCTCCAATTGG
CGTTGCAAAAGACAATGTTTGGAGAGAATTCCTTGATAATCTTGAACAAT
GTATACGTAACAAAGCAAAGGAGGATATCTTGTTGATAGGATGTGACTGT
AACTCATCTCTCGGTATTAGCTATGAGAGAAAACCTGAGGAGGAAAAACC
ATCAATCGGAAAATTTGGCTTACCGCATCGCAATGAAGCCGGTGTTCGCT
TTCTCACCTTCCTCGAAACGTTGAACCTTGTCGCAATAACAACATATTTC
CGAaaacgaaattatgcaacttggACTCATCCACGTTCAAAGCTACCACA
TCAAATCGATCATGTTATAtccgaaaaatcaaccttttgcCGTTTTACCG
ATGCATCAGTAAGACAACCGTTAGTTGATAGCGATCACCTTGCGATTCGA
TGTAGATTGAAAATTATGTTGAACTTTAGAAAATCCCGACAATGTAATCC
TCTGAGAAAGCTCGATAGTAATGTTTTNNNNNcaaatttgattgaaaaga
gAAACCTTGCTATACTATGTAAAATGAATCGTGTTACAAGAAGGACCACT
GAAAACCTTCGTGTCGCTCGGAAGCAGTTGAAATCTGCCATCTCAAGGGC
AAAGAACAATTGGGTTAAAAGTGTCTATGATAAAGTAAATCAAAGAGACA
CTACTCGTACCGGTACTCAGGCATATTGGGACAGcattaaacttttaaaa
aggGGAATGGAAAAACCTACCCCAAGCAAGCAAACGATGATGATGAAACC
GAACGGTGACAGATGTACCAGCCCTGAAGAAAATGCTAATGTGTTCCGtg
accattttgagaatctctAC Run BLAST on NCBI protein sequence of TCONS_00072053-protein >TCONS_00072053-protein ID=TCONS_00072053-protein|Name=TCONS_00072053-protein|organism=Clytia hemisphaerica|type=polypeptide|length=290bp
RGKNVSIYLISAYAPIGVAKDNVWREFLDNLEQCIRNKAKEDILLIGCDC
NSSLGISYERKPEEEKPSIGKFGLPHRNEAGVRFLTFLETLNLVAITTYF
RKRNYATWTHPRSKLPHQIDHVISEKSTFCRFTDASVRQPLVDSDHLAIR
CRLKIMLNFRKSRQCNPLRKLDSNVXXXNLIEKRNLAILCKMNRVTRRTT
ENLRVARKQLKSAISRAKNNWVKSVYDKVNQRDTTRTGTQAYWDSIKLLK
RGMEKPTPSKQTMMMKPNGDRCTSPEENANVFRDHFENLY Run BLAST on NCBI transcript from alignment at scaffold_7:66014..66883 Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072053 ID=TCONS_00072053|Name=TCONS_00072053|organism=Clytia hemisphaerica|type=transcript|length=870bp|location=Sequence derived from alignment at scaffold_7:66014..66883 (Clytia hemisphaerica)
GTagagattctcaaaatggtcaCGGAACACATTAGCATTTTCTTCAGGGC
TGGTACATCTGTCACCGTTCGGTTTCATCATCATCGTTTGCTTGCTTGGG
GTAGGTTTTTCCATTCCcctttttaaaagtttaatgCTGTCCCAATATGC
CTGAGTACCGGTACGAGTAGTGTCTCTTTGATTTACTTTATCATAGACAC
TTTTAACCCAATTGTTCTTTGCCCTTGAGATGGCAGATTTCAACTGCTTC
CGAGCGACACGAAGGTTTTCAGTGGTCCTTCTTGTAACACGATTCATTTT
ACATAGTATAGCAAGGTTTctcttttcaatcaaatttgNNNNNAAAACAT
TACTATCGAGCTTTCTCAGAGGATTACATTGTCGGGATTTTCTAAAGTTC
AACATAATTTTCAATCTACATCGAATCGCAAGGTGATCGCTATCAACTAA
CGGTTGTCTTACTGATGCATCGGTAAAACGgcaaaaggttgatttttcgg
aTATAACATGATCGATTTGATGTGGTAGCTTTGAACGTGGATGAGTccaa
gttgcataatttcgtttTCGGAAATATGTTGTTATTGCGACAAGGTTCAA
CGTTTCGAGGAAGGTGAGAAAGCGAACACCGGCTTCATTGCGATGCGGTA
AGCCAAATTTTCCGATTGATGGTTTTTCCTCCTCAGGTTTTCTCTCATAG
CTAATACCGAGAGATGAGTTACAGTCACATCCTATCAACAAGATATCCTC
CTTTGCTTTGTTACGTATACATTGTTCAAGATTATCAAGGAATTCTCTCC
AAACATTGTCTTTTGCAACGCCAATTGGAGCATAAGCAGAGATCAAATAA
ATGCTAACGTTTTTTCCTCG Coding sequence (CDS) from alignment at scaffold_7:66014..66883 >TCONS_00072053 ID=TCONS_00072053|Name=TCONS_00072053|organism=Clytia hemisphaerica|type=CDS|length=870bp|location=Sequence derived from alignment at scaffold_7:66014..66883 (Clytia hemisphaerica)
GTagagattctcaaaatggtcaCGGAACACATTAGCATTTTCTTCAGGGC
TGGTACATCTGTCACCGTTCGGTTTCATCATCATCGTTTGCTTGCTTGGG
GTAGGTTTTTCCATTCCcctttttaaaagtttaatgCTGTCCCAATATGC
CTGAGTACCGGTACGAGTAGTGTCTCTTTGATTTACTTTATCATAGACAC
TTTTAACCCAATTGTTCTTTGCCCTTGAGATGGCAGATTTCAACTGCTTC
CGAGCGACACGAAGGTTTTCAGTGGTCCTTCTTGTAACACGATTCATTTT
ACATAGTATAGCAAGGTTTctcttttcaatcaaatttgNNNNNAAAACAT
TACTATCGAGCTTTCTCAGAGGATTACATTGTCGGGATTTTCTAAAGTTC
AACATAATTTTCAATCTACATCGAATCGCAAGGTGATCGCTATCAACTAA
CGGTTGTCTTACTGATGCATCGGTAAAACGgcaaaaggttgatttttcgg
aTATAACATGATCGATTTGATGTGGTAGCTTTGAACGTGGATGAGTccaa
gttgcataatttcgtttTCGGAAATATGTTGTTATTGCGACAAGGTTCAA
CGTTTCGAGGAAGGTGAGAAAGCGAACACCGGCTTCATTGCGATGCGGTA
AGCCAAATTTTCCGATTGATGGTTTTTCCTCCTCAGGTTTTCTCTCATAG
CTAATACCGAGAGATGAGTTACAGTCACATCCTATCAACAAGATATCCTC
CTTTGCTTTGTTACGTATACATTGTTCAAGATTATCAAGGAATTCTCTCC
AAACATTGTCTTTTGCAACGCCAATTGGAGCATAAGCAGAGATCAAATAA
ATGCTAACGTTTTTTCCTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072053-exon-scaffold_7-1491911889:66014..66883 | TCONS_00072053-exon-scaffold_7-1491911889:66014..66883 | Clytia hemisphaerica | exon |
| TCONS_00072053-exon-scaffold_7-1510915933:66014..66883 | TCONS_00072053-exon-scaffold_7-1510915933:66014..66883 | Clytia hemisphaerica | exon |
| TCONS_00072053-exon-scaffold_7-1575043694:66014..66883 | TCONS_00072053-exon-scaffold_7-1575043694:66014..66883 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_7 | supercontig | scaffold_7:66014..66883 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
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