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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072048 ID=TCONS_00072048|Name=TCONS_00072048|organism=Clytia hemisphaerica|type=transcript|length=696bp GCAAAGCATGCGCTTGCATGGTAGTACTACGCGGGAGGCTTTTGTCGCAA ATGAAAATTATCGAGAGATGAACACGGCGCCTTAAAGAAAATTACCATTT GTAGATAGAGCTTTACGGTATCTTTTCTAAGCaccaaataattaatttta ctGACTTGAAAACTTCGGGAATCATAATGTAGCCGAGGAAGAATTGCGTT GAAAAACACACGAATTCAAGTCttggtttttaatttcactACCGTAACGA TTTGCATACATATTGATTTTGCTGACTGGAATACTTCGAGAATCATAATC TAGCCGCATTTTCCTACCGTAACGATTTGCATACCAAGCAacatgcaaat tttttttgaattgacctGGATGAGGTGGATTTGCATGATTCCCAGGCTCA TCGGTGATTTTATGCACTAAAGGTCTAAAATAAAGACTGAAAAATTACCC TAGGATGGCGTTACCCTGAATTTCTCTATGcTCTCTTCCGAACGGCAATT GTTTGTACAGTTCTCTGTCGCTTCACATGGTTGGCAACAATTCGCTGTCT AATGCTTTGCGATGCCTTACGTGTGgggaattatttttgttttGTGCAGC TTTTCTACCTCTTGCTTTCCAGAAGTGTCTTGCTTTGGTTTCAACTGATG TACATAgatttgaaaaacgaaaaaaaataaaaaagataaaaaaaac Run BLAST on NCBI transcript from alignment at scaffold_7:280..9117- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072048 ID=TCONS_00072048|Name=TCONS_00072048|organism=Clytia hemisphaerica|type=transcript|length=8838bp|location=Sequence derived from alignment at scaffold_7:280..9117- (Clytia hemisphaerica) GCAAAGCATGCGCTTGCATGGTAGTACTACGCGGGAGGCTTTTGTCGCAA
ATGAAAATTATCGAGAGATGAACACGGCGCCTTAAAGAAAATTACCATTT
GTAGATAGAGCTTTACGGTATCTTTTCTAAGCACCAAATAATTAATTTTA
CTGACTTGAAAACTTCGGGAATCATAATGTAGCCGAGGAAGAATTGCGTT
GAAAAACACACGAATTCAAGTCTTGGTTTTTAATTTCACTACCGTAACGA
TTTGCATACATATTGATTTTGCTGACTGGAATACTTCGAGAATCATAATC
TAGCCGCATTTTCCTACCGTAACGATTTGCATACCAAGCAACATGCAAAT
TTTTTTTGAATTGACCTGGATGAGGTGGATTTGCATGATTCCCAGGCTCA
TCGGTGATTTTATGCACTAAAGGTCTAAAATAAAGACTGAAAAATTACCC
TAGGATGGCGTTACCCTGAATTTCTCTATGGTAAGTCCTGATTTTAGATT
TTAAGAGCGTAATTCTTGAAAATGCTTGTCAGGCCTATGCATGATCTCTT
CCAAAGTACAACATGGAGAGAGTCACTCGTGAGCTTCGAGCTGCCATCCA
GCAAGAAAATCATGAGGTTATTTTTGAAAAATCTGTTGAGTTGAGAAAAT
TTTTGAAAGTGAGGAGTGTTGATTTGTTGGCTTTGAGTAGAGAAGGTTCT
GCCAATGTTTGTTTTTCTGTTTATGGGAACATTCCAAAGTCCATTTCCAG
GGATGTCAAACCCATAAGGTATGTAACTTGTTTTTATTCTCTTGTCTGTG
TATCACCCGCAAAAACAATTAATTATAACCACATCTAATTAGACTGGCAA
GATAGTAATTAATTTTTTTTCTCTCTCTCTTCTGTAATACCCTTAATTTC
TCCTTCTTCATTGCATCATAAGTAGGTGTAATCTGATACAAAATCATGTA
ATGTAGCACTTATGTTTAAAAAAAATGAGTTTTTTTTTGTTACATGACAA
ATATAATCTGTAGTATATACATAATCTTTTACTCGGGCTCTGATTTTTGA
CATGTTATTCACAGTCGAGAACCAGACACTTTATGTAAGGGGTCATCCGT
ATAGTACCGTGAGATCGGGTAACTTGCATCAGTGGAGGCTAACAACATGC
ATAGCCCTCAAATGAAAGACTTGGCTGGTCATTAAAAATCAAAACAAAAA
TTTTAGAGTAGAGCTGCGAGCGGAGCTGCGTTGTTTTATTTTAATGACCA
GAAAGGTCATTCTTTTGAGGGCTATGCATGTTTGCATCATCCACTGATGC
AGATGCAAGTTACCCGATCTCACGGTACGTACACAAAAATTATACAAATT
TGATAACCTCTCATGCCTTGCATGCAGTGAAAATTAGAGATGAAGTCATT
CATTCATTAATTGTATATGCTTTTGCTAAACCCCCTCTCCCCCTTCACTG
TGTAGGTGCTACAGCATATGGATGGCCCCAAGCCAAGTGATGAAAGAAGA
TGTTACACGGTAAATACAATAATATTTTAATTTTTTATCTTCAGCTCTCT
TCCGCAATTGTTTGTTCAGTTCTCTGTCGCTTCACATGGTTGGCAACAAT
TCACTGCCTGATGCTTTGCGATGTTTTACGTGTGGGGAATTATTTTTGTT
TTGCGAGTATTATTCCAATCATCCATTACTCAAAGAACTCTTTTCCAAGC
ATTCCACAGTTTTCCATAGTTTTTATTCCTTACTAGGTGGTGCATGTGTT
TCCGACTTCTCACAGGGCACTAATTTGAAAGGTTCCGCAAATCATTTCGT
CCCTTTGGTAAGTCTGAAAGAATCCAAAAAAACAAAAACAAAGAAAACTG
GTTCTCTACCATCATGTAGTAAAAAGCAGCCCTCAACACCCAAAAGAAAA
TTTGAAGCTGAAAGTCTCTTAGATCAACCACCATCCAAACAGCTCAAATT
TGCCACGTCTGTTGTTATTGATATGCCTTCTTTGCCAAGTGTTTCACCTC
TAAAGCCAAAGGTGACATGTTAATAATCCAACTCTTTTTAATTATTTTAG
CTATAAAAAGTCATTGCTAGAGTCTAAACCACCTAAACAATTTTCTGTTT
CGTATCACCGCGCCGTCCTCCTAACTCAGATGAGTCCAAACCCTGAGTAA
ACATCAATTTTTCAGATGGGACTGAACCCACTTCTTCCACATTTGAAGGC
TTTGTCCCAAGTCCAATAACCACATCCAGCACTTTTTCTTTTTCAGGTGC
ACCTAAACCCACTCGCGGTGTATCGGAGGGCCTTGTCGCCAGTTCGACAC
CCAACTCCACCAATTTTTTTTTTACAGGTGCACCCAAACCCACTTGCGGT
GCATATCTGAGGTCTTTGTCGCCAGTTCGACACCCAACTCCACCAATGTT
TTTTTTACAGGTGCACCCAAACCCACTTGTGGTGCATCTGAGCGCATTGT
CGCCAGTTAGACAACCAATTACACCACTGCTTTTTTACAGGTGCACCCAA
ACCCACTTTTGGTGCATCTGAAGGCTTTGTTGCCAGTCCGACTCATATTT
CCTTTTCAGATCAGTTTCACATTAGAGAAAAGCCTAGTACTCCCTCTATA
TCGGAAAGTCCTTCAAATCCATATTCTTCATTCTTTGAAAAAAGGACACG
AAATTTGAAAATGCCATCTGTCAGTAGAAAAGTGACACTGCCTCCAACCA
TTCTTGAAAATATCAGTGAAGAATCTAAATTTGGCATTTGGGACCTATTT
TTCAAAAGCAAAATCATTATCAGAAACAGAAATATTTGATCTTATCACCA
ATGTCTTTTCCCCCGACCCTGATTTTAAATTCCTAAAGCCCACCAATTGA
CGAGAGTTTAGAGCCGATTGGCTCTCAGAACATCAATGGTTAAAATATTC
ACCCAGTAGGGGAGGTGGTTTCTGTTTACCATGCTCTCTATTTTCTCATT
GTATACCTTCAACAAGTAAAGGTGTAATGATATCAAAACCAATTCTTCCA
TCTGCCAATACAAAAGCAGCTCTGCGCGATCATGAAACTGCTTATCAGGG
TATCCACTCTTTTTCTTTCAACGCCTTCCAACAATTTATTTCCAATTATG
AAGGGAAATCTAAACCCATTGATTCTCTACTTGAAGCTGCCATAGCTCAA
CGCGATAACCATCTTAGACAAATCTTAGTACCAATCGTTGACACTGTTCT
TTTCTTAGGTAGACGGGGGCTGGCATTAAGGGGTCATAGGGATAGTTCTG
ATGCTTATCCAGAAGCTGGTTGCTATTCAAAAGACCCTGGGCTCGGGAAT
TTTATTGATTTGTTAAACTATGGCATTCGGAGGGGTGATACTGTTTTGAA
GGAGCATTATGAAAACCATCCAAAAAATGCTTCTTATATGTCTTATCCTA
TTCAAAATGAAATCATTGACTGTATTGGGGAAATCATTTTGGAGACAATT
CTTAATAGGGTAAAGGAAGCAAAGTTCTTTTCTGTTCTTGCTGATGAAGC
AATGGACGCTTCCAAAAAGGAACAGCTCTCTATTGTTCTGCGCTATATTC
ATGATAATAAAATTTATGAGGACTTTTCAGGATTTGTTCACCTCAAGGAC
GGTTTAACAGGCAAACACCTTGCTGATGCCATTCTTGAATTTATTGAAAA
GCTAGGTCTGGATTATAAAGATATCAGAGGGCAGGGATATGATGGGGCAG
GTGCTGTTGCGGGCTAAAAAAGCGGGTGCTCTGCGCGAATTTTGAACAAA
AACAAGAAGGCTCTTTATTGTCACTGTTTCTGCCATCGTCTGAATATCTC
TATCTGTAGAGCATGTGAAATCAGAAATGTAAACAATATGCTCAAGACAG
TCAAAGAAAGCTCATATTTTTTTAACTTGAGCGAAGGTCGTCAAAATGTT
TTTGTAGAGTTTATTGACTCAATGTTTACAGGGAATACACACACACGTCT
NTCTCTCTTCTGTAATACCCTTAACTTCTCCCCCTTCATTGTATCATAAG
TAGGTGTAATCTGATACAAATCATGTAATGTAGCACGTATGTGCTAAATT
AGTTTTTTTTGTTACGTGACAGATATAATCTGTAGTATATACATAATCTT
TTACTCGGGTTTTGATTTTTGACATGTTATTCACAGTCGAGAACCAGACA
CTTCCCGTTCTATTCACATTTTTTAATGTAAGGGGTCATCCGCATAGTAC
GTACACAAAAATTATGCAAATTCAATANTGTTCTTTTCACATTTTTTAAT
GTAAGGGGTCATCCGCATAGTACGTACACAAAAATTATACAAATTCAATA
CCCTCTCATGCCTTGCATTCAGTGAAAATTAGAGATGAAGCCATTCATTC
ATTAATGTTATATGCTTTTGCTAAACCCCTTCTCCCCCTACACTGTGTAG
GTGCTATATGGATGGCCCCCAAGTGATGAAAGAAGCTGTTACATGGTAAA
TATAATAATATCTTAATTTTTTTATCTTCAGCTCTCTTCCGAACGGCAAT
TGTTTGTACAGTTCTCTGTCGCTTCACATGGTTGGCAACAATTCGCTGTC
TAATGCTTTGCGATGCCTTACGTGTGGGGAATTATTTTTGTTTTGTGAGT
ATTATTCCAATATCCATTGCTCAAAGAACTCTTTTCTAAGCATTCCACAG
TTTTCCATAGTTTTAATTCTTTACTAGGCGGTGCATGTGTTTCCGACTTC
TCACAGGGCACTAATTTGAAAGGTTCCGCATTGATTAAAGCCGAGGCCAA
GCATAACTCTTCCCCAAATGTTTTTCTTCCTTTTTATGCATTTGTGCTCT
TTCAACTGTCACCAGGAGGAAAATAATAACATTTTATCCTGACCAGGGTC
TACCAAGGTACAAAATTCTATTCAATAACACCACCATTATTCCTAGAGTA
GATGACTCAAAGCTTAAACCATTTAAAATTTTGTTTTGTAATTTATCAGA
CCATTTGAACAGTGACTTTCAGCCAAATCATTTCGTCCCTTTGGTAAATC
TGAAAGAATCCAAAAAAACAAAAACAAAAACAAAGAAAACTGGTTCTCTA
CCATCATGTAGTAAAAAGCAGCTCTCAAAACCCAAAAGAAAATTTGAAGC
TGAAAGTCTCTCAGATCAACCACCATCCAAACAGCTCAAATTTGCCTCAT
CTGTTGTTACTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNGGCTGGCATTAAGGGGTCATAGGGATA
GTTCTGATGCTTATCCAGAAGCTGGTTGCTATTCAAAAGACCCTGGGCTC
GGGAATTTTATTGATTTGTTAAACTATGGCATTCGGAGGGGTGATACTGT
TTTGAAGGAGCATTATGAAAACCATCCAAAAAATGCTTCTTATATGTCTT
ATCCTATTCAAAATGAAATCATTGACTGTATTGGGGAAATCATTTTGGAG
ACAATTCTTAATAGGGTAAAGGAAGCAAAGTTCTTTTCTGTTCTTGCTGA
TGAAGCAATGGACGCTTCCAAAAAGGAACAGCTCTCTATTGTTCTGCGCT
ATATTCATGATAATAAAATTTATGAGGACTTTTCAGGATTTGTTCACCTC
AAGGACGGTTTAACAGGCAAACACCTTGCTGATGCCATTCTTGAATTTAT
TGAAAAGCTAGGTCTGGATTATAAAGATATCAGAGGGCAGGGATATGATG
GGGCAGGTGCTGTTGCGGGCTAAAAAAGCGGGTGCTCTGCGCGAATTTTG
AACAAAAACAAGAAGGCTCTTTATTGTCACTGTTTCTGCCATCGTCTGAA
TATCTCTATCTGTAGAGCATGTGAAATCAGAAATGTAAACAATATGCTCA
AGACAGTCAAAGAAAGCTCATATTTTTTTAACTTGAGCGAAGGTCGTCAA
AATGTTTTTGTAGAGTTTATTGACTCAATGTTTACAGGGAATACACACAC
ACGTCTTAAAGATGTTTGCAGAACTAGGTGGCTTGAACGTATTCTGGGTT
TGGACTCATTTGAGGAGCTTCTTCCCGCAATGCTCAAAGCACTCGACAAA
ATGAGATTAAATGCAATGAAAACTTTTAACCGTGATACTGTCACCAAAGC
TGACTGTCTTTACAAAGCCATCGATTTCCAGTTTTTAGCAAACCTTGTCA
TAACTCGTTGCGTTTTTGATATGTCACTAGAGGTGACTGAACTCTTGCAA
TCCAAAGGTAATGACATTGCAGATGGGGTCAACCAGATTCGGTCTCTATT
AAAAAAAGTGGAAGCTTACAGGAGGTCTCCTAAAATTGATGAATTTCATG
ATGAATGTTATTCCAAGGTTCTTNTTAAAAAAAGTGGGAGCTTACAGGAG
GTCTCCTAAAATTGATGAATTTCATGATGAATGTTATTCCAAGGTTCTTT
TGTTGGCTGAGAAATTAGAAATTATTGAGAAGGCTCCCCGTGTTTGTAGA
AAACAAACAAAACGTTCAAATCCTCCCCATTCATCCCCTTCTGATTATTT
CAAAAAAACAATCACCATTCCAGTCCTCGATCACTTGAATAGTGAATTAA
AAACAAAGTTTTCTGAAGATTCTTACATTGCCTACAAAGGACTTTATGTC
ATTCCTTCCAAAATAGTTTCTCTTGGCAGTAAAGGAGAGACATGGCAAAA
CAAGTTTCGTCCTTTTTTGATTTTTTATGAGGATGACCTTCCTAGTCCTT
TAACCATTGATGCCGAACTTCAAAATTGGGAAGATTTTTGGGTAANTCAG
TAAAGGAGAGACATGGCAAGACAAGTTTCGTCCTTTTTTGATTTTTTATG
AGGATGACCTTCCTAGTCCTTTAACCATTGATGCCGAACTTCAAAATTGG
GAAGATTTTTGGGTAATGAATTCGGAAACATGCCCAAGTAATGTTCAATC
TGCGCTTCTTTCTTGTCANGATTTTTGGGTAATGAATTCGGAAACATGCC
CAAGTAATGTTCAATCTGCGGTTCTTTCTTGTCACTCAAACCCTCCCACA
AACTCCTATTCGGCAGTCTCTTTTCCTGGTTTTAAAAACATAAAATGCTG
TCTTAAAATCTTGGCCTCACTTCCAATCACTACTTGTGAATGCGAGCGCT
CTTTTTCAGCGATGAGAAGACTTAAAACCCATACTAGAACAACTATGGGC
CAAGATAGATTCAGTAATCTTGCTCTCATGGAATTCCATCCTTCCATCAT
TCCAGATTCTCAGGCTATCATCAATAGGTTTTTAGGAAAGAAGAAACGCA
GAATGTATAAAACCAACAATTAATTTTTACCATAGGTGCAGCTTTTCTAC
CTCTTGCTTTCCAGAAGTGTCTTGCTTTGGTTTCAACTGATGTACATAGA
TTTGAAAAACGAAAAAAAATAAAAAAGATAAAAAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00072048-exon-scaffold_7-1575043694:8638..9117 | TCONS_00072048-exon-scaffold_7-1575043694:8638..9117 | Clytia hemisphaerica | exon |
TCONS_00072048-exon-scaffold_7-1575043694:4524..4636 | TCONS_00072048-exon-scaffold_7-1575043694:4524..4636 | Clytia hemisphaerica | exon |
TCONS_00072048-exon-scaffold_7-1575043694:280..382 | TCONS_00072048-exon-scaffold_7-1575043694:280..382 | Clytia hemisphaerica | exon |
TCONS_00072048-exon-scaffold_7-1510915933:8638..9117 | TCONS_00072048-exon-scaffold_7-1510915933:8638..9117 | Clytia hemisphaerica | exon |
TCONS_00072048-exon-scaffold_7-1510915933:4524..4636 | TCONS_00072048-exon-scaffold_7-1510915933:4524..4636 | Clytia hemisphaerica | exon |
TCONS_00072048-exon-scaffold_7-1510915933:280..382 | TCONS_00072048-exon-scaffold_7-1510915933:280..382 | Clytia hemisphaerica | exon |
TCONS_00072048-exon-scaffold_7-1491911889:8638..9117 | TCONS_00072048-exon-scaffold_7-1491911889:8638..9117 | Clytia hemisphaerica | exon |
TCONS_00072048-exon-scaffold_7-1491911889:4524..4636 | TCONS_00072048-exon-scaffold_7-1491911889:4524..4636 | Clytia hemisphaerica | exon |
TCONS_00072048-exon-scaffold_7-1491911889:280..382 | TCONS_00072048-exon-scaffold_7-1491911889:280..382 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_7 | supercontig | scaffold_7:280..9117 - |
Blast
The following BLAST results are available for this feature:
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