TCONS_00072048 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072048
Unique NameTCONS_00072048
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length696

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072048 ID=TCONS_00072048|Name=TCONS_00072048|organism=Clytia hemisphaerica|type=transcript|length=696bp
GCAAAGCATGCGCTTGCATGGTAGTACTACGCGGGAGGCTTTTGTCGCAA
ATGAAAATTATCGAGAGATGAACACGGCGCCTTAAAGAAAATTACCATTT
GTAGATAGAGCTTTACGGTATCTTTTCTAAGCaccaaataattaatttta
ctGACTTGAAAACTTCGGGAATCATAATGTAGCCGAGGAAGAATTGCGTT
GAAAAACACACGAATTCAAGTCttggtttttaatttcactACCGTAACGA
TTTGCATACATATTGATTTTGCTGACTGGAATACTTCGAGAATCATAATC
TAGCCGCATTTTCCTACCGTAACGATTTGCATACCAAGCAacatgcaaat
tttttttgaattgacctGGATGAGGTGGATTTGCATGATTCCCAGGCTCA
TCGGTGATTTTATGCACTAAAGGTCTAAAATAAAGACTGAAAAATTACCC
TAGGATGGCGTTACCCTGAATTTCTCTATGcTCTCTTCCGAACGGCAATT
GTTTGTACAGTTCTCTGTCGCTTCACATGGTTGGCAACAATTCGCTGTCT
AATGCTTTGCGATGCCTTACGTGTGgggaattatttttgttttGTGCAGC
TTTTCTACCTCTTGCTTTCCAGAAGTGTCTTGCTTTGGTTTCAACTGATG
TACATAgatttgaaaaacgaaaaaaaataaaaaagataaaaaaaac
Run BLAST on NCBI

transcript from alignment at scaffold_7:280..9117-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072048 ID=TCONS_00072048|Name=TCONS_00072048|organism=Clytia hemisphaerica|type=transcript|length=8838bp|location=Sequence derived from alignment at scaffold_7:280..9117- (Clytia hemisphaerica)
GCAAAGCATGCGCTTGCATGGTAGTACTACGCGGGAGGCTTTTGTCGCAA ATGAAAATTATCGAGAGATGAACACGGCGCCTTAAAGAAAATTACCATTT GTAGATAGAGCTTTACGGTATCTTTTCTAAGCACCAAATAATTAATTTTA CTGACTTGAAAACTTCGGGAATCATAATGTAGCCGAGGAAGAATTGCGTT GAAAAACACACGAATTCAAGTCTTGGTTTTTAATTTCACTACCGTAACGA TTTGCATACATATTGATTTTGCTGACTGGAATACTTCGAGAATCATAATC TAGCCGCATTTTCCTACCGTAACGATTTGCATACCAAGCAACATGCAAAT TTTTTTTGAATTGACCTGGATGAGGTGGATTTGCATGATTCCCAGGCTCA TCGGTGATTTTATGCACTAAAGGTCTAAAATAAAGACTGAAAAATTACCC TAGGATGGCGTTACCCTGAATTTCTCTATGGTAAGTCCTGATTTTAGATT TTAAGAGCGTAATTCTTGAAAATGCTTGTCAGGCCTATGCATGATCTCTT CCAAAGTACAACATGGAGAGAGTCACTCGTGAGCTTCGAGCTGCCATCCA GCAAGAAAATCATGAGGTTATTTTTGAAAAATCTGTTGAGTTGAGAAAAT TTTTGAAAGTGAGGAGTGTTGATTTGTTGGCTTTGAGTAGAGAAGGTTCT GCCAATGTTTGTTTTTCTGTTTATGGGAACATTCCAAAGTCCATTTCCAG GGATGTCAAACCCATAAGGTATGTAACTTGTTTTTATTCTCTTGTCTGTG TATCACCCGCAAAAACAATTAATTATAACCACATCTAATTAGACTGGCAA GATAGTAATTAATTTTTTTTCTCTCTCTCTTCTGTAATACCCTTAATTTC TCCTTCTTCATTGCATCATAAGTAGGTGTAATCTGATACAAAATCATGTA ATGTAGCACTTATGTTTAAAAAAAATGAGTTTTTTTTTGTTACATGACAA ATATAATCTGTAGTATATACATAATCTTTTACTCGGGCTCTGATTTTTGA CATGTTATTCACAGTCGAGAACCAGACACTTTATGTAAGGGGTCATCCGT ATAGTACCGTGAGATCGGGTAACTTGCATCAGTGGAGGCTAACAACATGC ATAGCCCTCAAATGAAAGACTTGGCTGGTCATTAAAAATCAAAACAAAAA TTTTAGAGTAGAGCTGCGAGCGGAGCTGCGTTGTTTTATTTTAATGACCA GAAAGGTCATTCTTTTGAGGGCTATGCATGTTTGCATCATCCACTGATGC AGATGCAAGTTACCCGATCTCACGGTACGTACACAAAAATTATACAAATT TGATAACCTCTCATGCCTTGCATGCAGTGAAAATTAGAGATGAAGTCATT CATTCATTAATTGTATATGCTTTTGCTAAACCCCCTCTCCCCCTTCACTG TGTAGGTGCTACAGCATATGGATGGCCCCAAGCCAAGTGATGAAAGAAGA TGTTACACGGTAAATACAATAATATTTTAATTTTTTATCTTCAGCTCTCT TCCGCAATTGTTTGTTCAGTTCTCTGTCGCTTCACATGGTTGGCAACAAT TCACTGCCTGATGCTTTGCGATGTTTTACGTGTGGGGAATTATTTTTGTT TTGCGAGTATTATTCCAATCATCCATTACTCAAAGAACTCTTTTCCAAGC ATTCCACAGTTTTCCATAGTTTTTATTCCTTACTAGGTGGTGCATGTGTT TCCGACTTCTCACAGGGCACTAATTTGAAAGGTTCCGCAAATCATTTCGT CCCTTTGGTAAGTCTGAAAGAATCCAAAAAAACAAAAACAAAGAAAACTG GTTCTCTACCATCATGTAGTAAAAAGCAGCCCTCAACACCCAAAAGAAAA TTTGAAGCTGAAAGTCTCTTAGATCAACCACCATCCAAACAGCTCAAATT TGCCACGTCTGTTGTTATTGATATGCCTTCTTTGCCAAGTGTTTCACCTC TAAAGCCAAAGGTGACATGTTAATAATCCAACTCTTTTTAATTATTTTAG CTATAAAAAGTCATTGCTAGAGTCTAAACCACCTAAACAATTTTCTGTTT CGTATCACCGCGCCGTCCTCCTAACTCAGATGAGTCCAAACCCTGAGTAA ACATCAATTTTTCAGATGGGACTGAACCCACTTCTTCCACATTTGAAGGC TTTGTCCCAAGTCCAATAACCACATCCAGCACTTTTTCTTTTTCAGGTGC ACCTAAACCCACTCGCGGTGTATCGGAGGGCCTTGTCGCCAGTTCGACAC CCAACTCCACCAATTTTTTTTTTACAGGTGCACCCAAACCCACTTGCGGT GCATATCTGAGGTCTTTGTCGCCAGTTCGACACCCAACTCCACCAATGTT TTTTTTACAGGTGCACCCAAACCCACTTGTGGTGCATCTGAGCGCATTGT CGCCAGTTAGACAACCAATTACACCACTGCTTTTTTACAGGTGCACCCAA ACCCACTTTTGGTGCATCTGAAGGCTTTGTTGCCAGTCCGACTCATATTT CCTTTTCAGATCAGTTTCACATTAGAGAAAAGCCTAGTACTCCCTCTATA TCGGAAAGTCCTTCAAATCCATATTCTTCATTCTTTGAAAAAAGGACACG AAATTTGAAAATGCCATCTGTCAGTAGAAAAGTGACACTGCCTCCAACCA TTCTTGAAAATATCAGTGAAGAATCTAAATTTGGCATTTGGGACCTATTT TTCAAAAGCAAAATCATTATCAGAAACAGAAATATTTGATCTTATCACCA ATGTCTTTTCCCCCGACCCTGATTTTAAATTCCTAAAGCCCACCAATTGA CGAGAGTTTAGAGCCGATTGGCTCTCAGAACATCAATGGTTAAAATATTC ACCCAGTAGGGGAGGTGGTTTCTGTTTACCATGCTCTCTATTTTCTCATT GTATACCTTCAACAAGTAAAGGTGTAATGATATCAAAACCAATTCTTCCA TCTGCCAATACAAAAGCAGCTCTGCGCGATCATGAAACTGCTTATCAGGG TATCCACTCTTTTTCTTTCAACGCCTTCCAACAATTTATTTCCAATTATG AAGGGAAATCTAAACCCATTGATTCTCTACTTGAAGCTGCCATAGCTCAA CGCGATAACCATCTTAGACAAATCTTAGTACCAATCGTTGACACTGTTCT TTTCTTAGGTAGACGGGGGCTGGCATTAAGGGGTCATAGGGATAGTTCTG ATGCTTATCCAGAAGCTGGTTGCTATTCAAAAGACCCTGGGCTCGGGAAT TTTATTGATTTGTTAAACTATGGCATTCGGAGGGGTGATACTGTTTTGAA GGAGCATTATGAAAACCATCCAAAAAATGCTTCTTATATGTCTTATCCTA TTCAAAATGAAATCATTGACTGTATTGGGGAAATCATTTTGGAGACAATT CTTAATAGGGTAAAGGAAGCAAAGTTCTTTTCTGTTCTTGCTGATGAAGC AATGGACGCTTCCAAAAAGGAACAGCTCTCTATTGTTCTGCGCTATATTC ATGATAATAAAATTTATGAGGACTTTTCAGGATTTGTTCACCTCAAGGAC GGTTTAACAGGCAAACACCTTGCTGATGCCATTCTTGAATTTATTGAAAA GCTAGGTCTGGATTATAAAGATATCAGAGGGCAGGGATATGATGGGGCAG GTGCTGTTGCGGGCTAAAAAAGCGGGTGCTCTGCGCGAATTTTGAACAAA AACAAGAAGGCTCTTTATTGTCACTGTTTCTGCCATCGTCTGAATATCTC TATCTGTAGAGCATGTGAAATCAGAAATGTAAACAATATGCTCAAGACAG TCAAAGAAAGCTCATATTTTTTTAACTTGAGCGAAGGTCGTCAAAATGTT TTTGTAGAGTTTATTGACTCAATGTTTACAGGGAATACACACACACGTCT NTCTCTCTTCTGTAATACCCTTAACTTCTCCCCCTTCATTGTATCATAAG TAGGTGTAATCTGATACAAATCATGTAATGTAGCACGTATGTGCTAAATT AGTTTTTTTTGTTACGTGACAGATATAATCTGTAGTATATACATAATCTT TTACTCGGGTTTTGATTTTTGACATGTTATTCACAGTCGAGAACCAGACA CTTCCCGTTCTATTCACATTTTTTAATGTAAGGGGTCATCCGCATAGTAC GTACACAAAAATTATGCAAATTCAATANTGTTCTTTTCACATTTTTTAAT GTAAGGGGTCATCCGCATAGTACGTACACAAAAATTATACAAATTCAATA CCCTCTCATGCCTTGCATTCAGTGAAAATTAGAGATGAAGCCATTCATTC ATTAATGTTATATGCTTTTGCTAAACCCCTTCTCCCCCTACACTGTGTAG GTGCTATATGGATGGCCCCCAAGTGATGAAAGAAGCTGTTACATGGTAAA TATAATAATATCTTAATTTTTTTATCTTCAGCTCTCTTCCGAACGGCAAT TGTTTGTACAGTTCTCTGTCGCTTCACATGGTTGGCAACAATTCGCTGTC TAATGCTTTGCGATGCCTTACGTGTGGGGAATTATTTTTGTTTTGTGAGT ATTATTCCAATATCCATTGCTCAAAGAACTCTTTTCTAAGCATTCCACAG TTTTCCATAGTTTTAATTCTTTACTAGGCGGTGCATGTGTTTCCGACTTC TCACAGGGCACTAATTTGAAAGGTTCCGCATTGATTAAAGCCGAGGCCAA GCATAACTCTTCCCCAAATGTTTTTCTTCCTTTTTATGCATTTGTGCTCT TTCAACTGTCACCAGGAGGAAAATAATAACATTTTATCCTGACCAGGGTC TACCAAGGTACAAAATTCTATTCAATAACACCACCATTATTCCTAGAGTA GATGACTCAAAGCTTAAACCATTTAAAATTTTGTTTTGTAATTTATCAGA CCATTTGAACAGTGACTTTCAGCCAAATCATTTCGTCCCTTTGGTAAATC TGAAAGAATCCAAAAAAACAAAAACAAAAACAAAGAAAACTGGTTCTCTA CCATCATGTAGTAAAAAGCAGCTCTCAAAACCCAAAAGAAAATTTGAAGC TGAAAGTCTCTCAGATCAACCACCATCCAAACAGCTCAAATTTGCCTCAT CTGTTGTTACTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNGGCTGGCATTAAGGGGTCATAGGGATA GTTCTGATGCTTATCCAGAAGCTGGTTGCTATTCAAAAGACCCTGGGCTC GGGAATTTTATTGATTTGTTAAACTATGGCATTCGGAGGGGTGATACTGT TTTGAAGGAGCATTATGAAAACCATCCAAAAAATGCTTCTTATATGTCTT ATCCTATTCAAAATGAAATCATTGACTGTATTGGGGAAATCATTTTGGAG ACAATTCTTAATAGGGTAAAGGAAGCAAAGTTCTTTTCTGTTCTTGCTGA TGAAGCAATGGACGCTTCCAAAAAGGAACAGCTCTCTATTGTTCTGCGCT ATATTCATGATAATAAAATTTATGAGGACTTTTCAGGATTTGTTCACCTC AAGGACGGTTTAACAGGCAAACACCTTGCTGATGCCATTCTTGAATTTAT TGAAAAGCTAGGTCTGGATTATAAAGATATCAGAGGGCAGGGATATGATG GGGCAGGTGCTGTTGCGGGCTAAAAAAGCGGGTGCTCTGCGCGAATTTTG AACAAAAACAAGAAGGCTCTTTATTGTCACTGTTTCTGCCATCGTCTGAA TATCTCTATCTGTAGAGCATGTGAAATCAGAAATGTAAACAATATGCTCA AGACAGTCAAAGAAAGCTCATATTTTTTTAACTTGAGCGAAGGTCGTCAA AATGTTTTTGTAGAGTTTATTGACTCAATGTTTACAGGGAATACACACAC ACGTCTTAAAGATGTTTGCAGAACTAGGTGGCTTGAACGTATTCTGGGTT TGGACTCATTTGAGGAGCTTCTTCCCGCAATGCTCAAAGCACTCGACAAA ATGAGATTAAATGCAATGAAAACTTTTAACCGTGATACTGTCACCAAAGC TGACTGTCTTTACAAAGCCATCGATTTCCAGTTTTTAGCAAACCTTGTCA TAACTCGTTGCGTTTTTGATATGTCACTAGAGGTGACTGAACTCTTGCAA TCCAAAGGTAATGACATTGCAGATGGGGTCAACCAGATTCGGTCTCTATT AAAAAAAGTGGAAGCTTACAGGAGGTCTCCTAAAATTGATGAATTTCATG ATGAATGTTATTCCAAGGTTCTTNTTAAAAAAAGTGGGAGCTTACAGGAG GTCTCCTAAAATTGATGAATTTCATGATGAATGTTATTCCAAGGTTCTTT TGTTGGCTGAGAAATTAGAAATTATTGAGAAGGCTCCCCGTGTTTGTAGA AAACAAACAAAACGTTCAAATCCTCCCCATTCATCCCCTTCTGATTATTT CAAAAAAACAATCACCATTCCAGTCCTCGATCACTTGAATAGTGAATTAA AAACAAAGTTTTCTGAAGATTCTTACATTGCCTACAAAGGACTTTATGTC ATTCCTTCCAAAATAGTTTCTCTTGGCAGTAAAGGAGAGACATGGCAAAA CAAGTTTCGTCCTTTTTTGATTTTTTATGAGGATGACCTTCCTAGTCCTT TAACCATTGATGCCGAACTTCAAAATTGGGAAGATTTTTGGGTAANTCAG TAAAGGAGAGACATGGCAAGACAAGTTTCGTCCTTTTTTGATTTTTTATG AGGATGACCTTCCTAGTCCTTTAACCATTGATGCCGAACTTCAAAATTGG GAAGATTTTTGGGTAATGAATTCGGAAACATGCCCAAGTAATGTTCAATC TGCGCTTCTTTCTTGTCANGATTTTTGGGTAATGAATTCGGAAACATGCC CAAGTAATGTTCAATCTGCGGTTCTTTCTTGTCACTCAAACCCTCCCACA AACTCCTATTCGGCAGTCTCTTTTCCTGGTTTTAAAAACATAAAATGCTG TCTTAAAATCTTGGCCTCACTTCCAATCACTACTTGTGAATGCGAGCGCT CTTTTTCAGCGATGAGAAGACTTAAAACCCATACTAGAACAACTATGGGC CAAGATAGATTCAGTAATCTTGCTCTCATGGAATTCCATCCTTCCATCAT TCCAGATTCTCAGGCTATCATCAATAGGTTTTTAGGAAAGAAGAAACGCA GAATGTATAAAACCAACAATTAATTTTTACCATAGGTGCAGCTTTTCTAC CTCTTGCTTTCCAGAAGTGTCTTGCTTTGGTTTCAACTGATGTACATAGA TTTGAAAAACGAAAAAAAATAAAAAAGATAAAAAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044744XLOC_044744Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072048-exon-scaffold_7-1575043694:8638..9117TCONS_00072048-exon-scaffold_7-1575043694:8638..9117Clytia hemisphaericaexon
TCONS_00072048-exon-scaffold_7-1575043694:4524..4636TCONS_00072048-exon-scaffold_7-1575043694:4524..4636Clytia hemisphaericaexon
TCONS_00072048-exon-scaffold_7-1575043694:280..382TCONS_00072048-exon-scaffold_7-1575043694:280..382Clytia hemisphaericaexon
TCONS_00072048-exon-scaffold_7-1510915933:8638..9117TCONS_00072048-exon-scaffold_7-1510915933:8638..9117Clytia hemisphaericaexon
TCONS_00072048-exon-scaffold_7-1510915933:4524..4636TCONS_00072048-exon-scaffold_7-1510915933:4524..4636Clytia hemisphaericaexon
TCONS_00072048-exon-scaffold_7-1510915933:280..382TCONS_00072048-exon-scaffold_7-1510915933:280..382Clytia hemisphaericaexon
TCONS_00072048-exon-scaffold_7-1491911889:8638..9117TCONS_00072048-exon-scaffold_7-1491911889:8638..9117Clytia hemisphaericaexon
TCONS_00072048-exon-scaffold_7-1491911889:4524..4636TCONS_00072048-exon-scaffold_7-1491911889:4524..4636Clytia hemisphaericaexon
TCONS_00072048-exon-scaffold_7-1491911889:280..382TCONS_00072048-exon-scaffold_7-1491911889:280..382Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:280..9117 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.145699 0.223525 0.41242 0.352915 0 0.0776319 0.0936596 0 0.0613889 0.15208 0.0738064 0.426202 0.163304 0.201263 0.405532 0.310747 0.755501 0.392373 0.154881 0.162072 0.352176 0.618404 0.293205 0.511304 0.664519 0.488637 0.263856 0.106607 0.242572 0.247143
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072048 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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