TCONS_00072046 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072046
Unique NameTCONS_00072046
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length559

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072046 ID=TCONS_00072046|Name=TCONS_00072046|organism=Clytia hemisphaerica|type=transcript|length=559bp
CTCTGCTCAAAAGATCTACCCCACCCATTGTGGAATTGTAATCGACAATG
ACATCAGGTTTGTATACTGCCTCTCCGGTACGGAAATTTCTCTTTCCTGA
ATCAATGAGTTAGCCAGTATGAATCGTGGATAACATTGACAccacttttt
ctttctttgttttggtcACATCATTCCACCTAAGGACCGTCAAATCTccg
ttgaattttttttctggtggATTGCCTCTTACCGGACGCCAATACCAGAA
GTCGTATGGCAGATTTGTTTTCGCTCGCAAGGTACCGCAACAATCAGTGT
TGTAATTGAGAAGAATTTCTGCTATTTCTGGGGATGTATAATAATTATCC
AGGGTTACGCTATAGCCTTTCCCAAGAAGATCAGACAGTAGGCTAAGGAC
AACTTTTGAAGGACTCTTTAGGTCCTCAAAGATAAATGGATTGTTGGCAG
GTTGTTCAGCAGGCTCAGTATAATTAGTTGTTACCCCAGTGTAAATAATA
AAGTTCCAGAGATACCCACTAGAGCTTTCACAAAGCATGTATAATTTCAC
GCCATACCG
Run BLAST on NCBI

protein sequence of TCONS_00072046-protein

>TCONS_00072046-protein ID=TCONS_00072046-protein|Name=TCONS_00072046-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
RYGVKLYMLCESSSGYLWNFIIYTGVTTNYTEPAEQPANNPFIFEDLKSP
SKVVLSLLSDLLGKGYSVTLDNYYTSPEIAEILLNYNTDCCGTLRAKTNL
PYDFWYWRPVRGNPPEKKFNGDLTVLRWNDVTKTKKEKVVSMLSTIHTG
Run BLAST on NCBI

transcript from alignment at scaffold_69:214765..215323

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072046 ID=TCONS_00072046|Name=TCONS_00072046|organism=Clytia hemisphaerica|type=transcript|length=559bp|location=Sequence derived from alignment at scaffold_69:214765..215323 (Clytia hemisphaerica)
CGGTATGGCGTGAAATTATACATGCTTTGTGAAAGCTCTAGTGGGTATCT
CTGGAACTTTATTATTTACACTGGGGTAACAACTAATTATACTGAGCCTG
CTGAACAACCTGCCAACAATCCATTTATCTTTGAGGACCTAAAGAGTCCT
TCAAAAGTTGTCCTTAGCCTACTGTCTGATCTTCTTGGGAAAGGCTATAG
CGTAACCCTGGATAATTATTATACATCCCCAGAAATAGCAGAAATTCTTC
TCAATTACAACACTGATTGTTGCGGTACCTTGCGAGCGAAAACAAATCTG
CCATACGACTTCTGGTATTGGCGTCCGGTAAGAGGCAATccaccagaaaa
aaaattcaacggAGATTTGACGGTCCTTAGGTGGAATGATGTgaccaaaa
caaagaaagaaaaagtggTGTCAATGTTATCCACGATTCATACTGGCTAA
CTCATTGATTCAGGAAAGAGAAATTTCCGTACCGGAGAGGCAGTATACAA
ACCTGATGTCATTGTCGATTACAATTCCACAATGGGTGGGGTAGATCTTT
TGAGCAGAG

Coding sequence (CDS) from alignment at scaffold_69:214765..215323

>TCONS_00072046 ID=TCONS_00072046|Name=TCONS_00072046|organism=Clytia hemisphaerica|type=CDS|length=450bp|location=Sequence derived from alignment at scaffold_69:214765..215323 (Clytia hemisphaerica)
CGGTATGGCGTGAAATTATACATGCTTTGTGAAAGCTCTAGTGGGTATCT
CTGGAACTTTATTATTTACACTGGGGTAACAACTAATTATACTGAGCCTG
CTGAACAACCTGCCAACAATCCATTTATCTTTGAGGACCTAAAGAGTCCT
TCAAAAGTTGTCCTTAGCCTACTGTCTGATCTTCTTGGGAAAGGCTATAG
CGTAACCCTGGATAATTATTATACATCCCCAGAAATAGCAGAAATTCTTC
TCAATTACAACACTGATTGTTGCGGTACCTTGCGAGCGAAAACAAATCTG
CCATACGACTTCTGGTATTGGCGTCCGGTAAGAGGCAATccaccagaaaa
aaaattcaacggAGATTTGACGGTCCTTAGGTGGAATGATGTgaccaaaa
caaagaaagaaaaagtggTGTCAATGTTATCCACGATTCATACTGGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044742XLOC_044742Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072046-exon-scaffold_69-1491911889:214765..215323TCONS_00072046-exon-scaffold_69-1491911889:214765..215323Clytia hemisphaericaexon
TCONS_00072046-exon-scaffold_69-1510915933:214765..215323TCONS_00072046-exon-scaffold_69-1510915933:214765..215323Clytia hemisphaericaexon
TCONS_00072046-exon-scaffold_69-1575043694:214765..215323TCONS_00072046-exon-scaffold_69-1575043694:214765..215323Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072046-proteinTCONS_00072046-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_69supercontigscaffold_69:214765..215323 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.401512	0.270396	0.384669	0.290273	0.679939	0.158428	0	0	0.256255	0.137198	1.37843	0.354632	0	0	0.461232	0.206301	0.4268	0.250447	0.32326	0.614476	0.136273	0.277722	0	0.105664	0	0.490058	0.277983	0.197711	0.206298	0.229254
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029526PGBD
Blast
[Close]
BLAST of TCONS_00072046 vs. Swiss-Prot (Human)
Match: PGBD4 (PiggyBac transposable element-derived protein 4 OS=Homo sapiens GN=PGBD4 PE=2 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 4.777e-23
Identity = 69/183 (37.70%), Postives = 98/183 (53.55%), Query Frame = -1 
Query:   14 RYGVKLYMLCESSSGYLWNFIIYTGVTTNYTEPAEQPANNPFIFEXXXXXXXXXXXXXXXXLGKGYSVTLDNYYTSPEIAEILLNYNTDCCGTLRA-KTNLPYDFWYWRPVRGNPPEKKFNGDLTVLRWNDVTKTKKEKVVSMLSTIHTG*LIDSGKRNFRTGEAVYKPDVIVDYNSTMGGVD 559
            R+G+KLY+LCES SGY+WN +++TG   N  + A+   ++  +            +L++DLLG+GY V LDN+  SP +   L    TD  GT R  +  +P D    R  +G     +F G+L  L+W D       K V+MLST H   +I+   RN   G+   +P VIVDYN  MG VD
Sbjct:  272 RFGLKLYVLCESQSGYVWNALVHTGPGMNLKDSADGLKSSRIVL-----------TLVNDLLGQGYCVFLDNFNISPMLFRELHQNRTDAVGTARLNRKQIPNDL-KKRIAKGTTV-ARFCGELMALKWCD------GKEVTMLSTFHNDTVIEVNNRN---GKKTKRPRVIVDYNENMGAVD 432
The following BLAST results are available for this feature:
BLAST of TCONS_00072046 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PGBD44.777e-2337.70PiggyBac transposable element-derived protein 4 OS... [more]
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