TCONS_00072044 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072044
Unique NameTCONS_00072044
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length378

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072044 ID=TCONS_00072044|Name=TCONS_00072044|organism=Clytia hemisphaerica|type=transcript|length=378bp
ATTCTTTGACAGAGTATATGTATGTGCTGGTACGCCGGGATTTCGTTAAT
GATATAGCGTATCTCGGCATACACAGAGAAAAGCCTTCTCGCGCTACCAT
TTTGTCTTCTTTCGCGCCTCCAAAACAAAGGCGGCGTATTTAATTAAAAT
GAATCCACTTTGCTCGTGGTTGCGCAACTTCTTTTTTCCCCCTTTTTACT
TCTTTTCCCCCGTTGAGGGTGGCGAGCGTGCATTTTTTCTGGTGTAatgg
atagagcgctggcttccgaatctgtaggtttttctttggtggtggttcga
atcccgcTCGGGTCGAAAATTaggttggtcgaaattgatggacaaatgat
tgacaggtatgaaaactcagtcagaaat
Run BLAST on NCBI

transcript from alignment at scaffold_69:204576..204953

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072044 ID=TCONS_00072044|Name=TCONS_00072044|organism=Clytia hemisphaerica|type=transcript|length=378bp|location=Sequence derived from alignment at scaffold_69:204576..204953 (Clytia hemisphaerica)
atttctgactgagttttcatacctgtcaatcatttgtccatcaatttcga
ccaacctAATTTTCGACCCGAgcgggattcgaaccaccaccaaagaaaaa
cctacagattcggaagccagcgctctatccatTACACCAGAAAAAATGCA
CGCTCGCCACCCTCAACGGGGGAAAAGAAGTAAAAAGGGGGAAAAAAGAA
GTTGCGCAACCACGAGCAAAGTGGATTCATTTTAATTAAATACGCCGCCT
TTGTTTTGGAGGCGCGAAAGAAGACAAAATGGTAGCGCGAGAAGGCTTTT
CTCTGTGTATGCCGAGATACGCTATATCATTAACGAAATCCCGGCGTACC
AGCACATACATATACTCTGTCAAAGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044740XLOC_044740Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072044-exon-scaffold_69-1491911889:204576..204953TCONS_00072044-exon-scaffold_69-1491911889:204576..204953Clytia hemisphaericaexon
TCONS_00072044-exon-scaffold_69-1510915933:204576..204953TCONS_00072044-exon-scaffold_69-1510915933:204576..204953Clytia hemisphaericaexon
TCONS_00072044-exon-scaffold_69-1575043694:204576..204953TCONS_00072044-exon-scaffold_69-1575043694:204576..204953Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_69supercontigscaffold_69:204576..204953 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.45747	2.42122	1.90153	1.53317	2.54789	2.01338	1.07958	1.26336	0.353804	0.609906	0	1.05787	0.698081	1.01495	0.476815	0.564426	0.315184	0.161526	0.499777	0	0.40594	0	0.415026	0.759514	0.901559	1.20693	4.7671	7.06568	2.56303	1.81377
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072044 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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