TCONS_00072043 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072043
Unique NameTCONS_00072043
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length371

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072043 ID=TCONS_00072043|Name=TCONS_00072043|organism=Clytia hemisphaerica|type=transcript|length=371bp
GTGCAGCAGCAGAATACAGCTAGCCAAATCTTTACAGTCGTGCGTTTATG
TAATGGTGAGTAGGCAAGGTAAGGACCTGAAAGATCGACTTGCGTGCCAT
GAAATGGTGGTGCAATGGTGATGCTGCATTGAGGGATTGGACCCATTGCT
GCTTCAACGGTCTTTTTGGTGAGATAGCGACATCTGGTGCATTGCTTTCT
GATGTTCTTAACAAGTTGACGTCCATCGATGATGTATGCAGATTTGAGAA
TGTAACGCAAAGTTGATTCAACACCAGAATGTTTACAAACAGGATGGTTC
CAGTGTACGTTAAGTGCAAGGCTTTGAGCGACTGGGCTGTCCTTGTCCAA
TACTGGTACGCAAAAGGTTGT
Run BLAST on NCBI

protein sequence of TCONS_00072043-protein

>TCONS_00072043-protein ID=TCONS_00072043-protein|Name=TCONS_00072043-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
TTFCVPVLDKDSPVAQSLALNVHWNHPVCKHSGVESTLRYILKSAYIIDG
RQLVKNIRKQCTRCRYLTKKTVEAAMGPIPQCSITIAPPFHGTQVDLSGP
YLAYSPLHKRTTVKIWLAVFCCC
Run BLAST on NCBI

transcript from alignment at scaffold_69:179118..179488

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072043 ID=TCONS_00072043|Name=TCONS_00072043|organism=Clytia hemisphaerica|type=transcript|length=371bp|location=Sequence derived from alignment at scaffold_69:179118..179488 (Clytia hemisphaerica)
ACAACCTTTTGCGTACCAGTATTGGACAAGGACAGCCCAGTCGCTCAAAG
CCTTGCACTTAACGTACACTGGAACCATCCTGTTTGTAAACATTCTGGTG
TTGAATCAACTTTGCGTTACATTCTCAAATCTGCATACATCATCGATGGA
CGTCAACTTGTTAAGAACATCAGAAAGCAATGCACCAGATGTCGCTATCT
CACCAAAAAGACCGTTGAAGCAGCAATGGGTCCAATCCCTCAATGCAGCA
TCACCATTGCACCACCATTTCATGGCACGCAAGTCGATCTTTCAGGTCCT
TACCTTGCCTACTCACCATTACATAAACGCACGACTGTAAAGATTTGGCT
AGCTGTATTCTGCTGCTGCAC

Coding sequence (CDS) from alignment at scaffold_69:179118..179488

>TCONS_00072043 ID=TCONS_00072043|Name=TCONS_00072043|organism=Clytia hemisphaerica|type=CDS|length=369bp|location=Sequence derived from alignment at scaffold_69:179118..179488 (Clytia hemisphaerica)
ACAACCTTTTGCGTACCAGTATTGGACAAGGACAGCCCAGTCGCTCAAAG
CCTTGCACTTAACGTACACTGGAACCATCCTGTTTGTAAACATTCTGGTG
TTGAATCAACTTTGCGTTACATTCTCAAATCTGCATACATCATCGATGGA
CGTCAACTTGTTAAGAACATCAGAAAGCAATGCACCAGATGTCGCTATCT
CACCAAAAAGACCGTTGAAGCAGCAATGGGTCCAATCCCTCAATGCAGCA
TCACCATTGCACCACCATTTCATGGCACGCAAGTCGATCTTTCAGGTCCT
TACCTTGCCTACTCACCATTACATAAACGCACGACTGTAAAGATTTGGCT
AGCTGTATTCTGCTGCTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044739XLOC_044739Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072043-exon-scaffold_69-1491911889:179118..179488TCONS_00072043-exon-scaffold_69-1491911889:179118..179488Clytia hemisphaericaexon
TCONS_00072043-exon-scaffold_69-1510915933:179118..179488TCONS_00072043-exon-scaffold_69-1510915933:179118..179488Clytia hemisphaericaexon
TCONS_00072043-exon-scaffold_69-1575043694:179118..179488TCONS_00072043-exon-scaffold_69-1575043694:179118..179488Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072043-proteinTCONS_00072043-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_69supercontigscaffold_69:179118..179488 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.73134	0.466275	1.23981	0.485183	0.295332	1.63362	2.30397	0.559954	0.184546	1.14295	0.221875	0.583407	0.64238	0.302516	0.31836	0.667257	0.164401	0.443961	1.37077	1.6356	0.21174	0	0	0.228286	1.55537	1.09383	0	0.220251	0.972285	0.742953
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072043 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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