TCONS_00072041 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072041
Unique NameTCONS_00072041
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length220

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072041 ID=TCONS_00072041|Name=TCONS_00072041|organism=Clytia hemisphaerica|type=transcript|length=220bp
tgtaaacaaactaggAGACCCCAAAAGTGCTTCTATTTAAATTCTACAAT
TCTACTTGAACACATATTTTCACTTGTTGTTATGTAACAAGTTTTTCTGA
GCACAGGCTGGTATTatttctccaatattttttccaaatgtaaatgtatt
taattttttagcaatGAGTTACACATCTGTTGAATTTAGTCCTCTATGGA
GCAATGATATAATTTTCTAG
Run BLAST on NCBI

transcript from alignment at scaffold_69:172484..172703

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072041 ID=TCONS_00072041|Name=TCONS_00072041|organism=Clytia hemisphaerica|type=transcript|length=220bp|location=Sequence derived from alignment at scaffold_69:172484..172703 (Clytia hemisphaerica)
CTAGAAAATTATATCATTGCTCCATAGAGGACTAAATTCAACAGATGTGT
AACTCattgctaaaaaattaaatacatttacatttggaaaaaatattgga
gaaatAATACCAGCCTGTGCTCAGAAAAACTTGTTACATAACAACAAGTG
AAAATATGTGTTCAAGTAGAATTGTAGAATTTAAATAGAAGCACTTTTGG
GGTCTcctagtttgtttaca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044737XLOC_044737Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072041-exon-scaffold_69-1491911889:172484..172703TCONS_00072041-exon-scaffold_69-1491911889:172484..172703Clytia hemisphaericaexon
TCONS_00072041-exon-scaffold_69-1510915933:172484..172703TCONS_00072041-exon-scaffold_69-1510915933:172484..172703Clytia hemisphaericaexon
TCONS_00072041-exon-scaffold_69-1575043694:172484..172703TCONS_00072041-exon-scaffold_69-1575043694:172484..172703Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_69supercontigscaffold_69:172484..172703 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.23713	1.4134	2.80148	0	10.01	6.33078	0	14.6894	5.21252	5.68939	3.23355	4.33415	3.2911	2.56338	2.10745	0.753872	2.78612	0.951896	0	4.12846	3.58838	1.75029	4.2554	4.72836	6.64125	4.74173	6.7854	5.43117	6.28667	1.92418
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072041 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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