TCONS_00072038 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072038
Unique NameTCONS_00072038
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length670

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072038 ID=TCONS_00072038|Name=TCONS_00072038|organism=Clytia hemisphaerica|type=transcript|length=670bp
NGCTGGTGGGACAAATTAAGTGTTGAAGGTCCACTGTTTGGCTACCATCC
GAAACCCACTAAATCGTGGCTCATTGTAAAGAATGAGAAAATTGCAGAAG
CAACCAAGCCAGTTGGATACGCCTTTTTGACCGTTCGCAAGGGTACTCTT
CTTTTTGTCGGGTGCCATTGATTGAATTAGATAGTcgagtttttcttttt
gacgaTCTGAcctttcttttgtgatttgataTTTGGTCGCtggattttca
attttctctttACCAAGAATTTGATTTTGGTTGTCATTCGTCATTCGTTG
GGAATTATTGAACTCTTCTGATGCTGTTTCTACAAACATCTTCAATCCCA
AGCCACCGAGTCGTGGTGGAAGTGAGAGAAGCTGGCGTTCATCGTCACTG
ACAAGTCGACCACCAGTGAGAGCAGGAATCAAATGGTGTCGTATCACCTT
AGATAACCTTGAGAGTCTGAAATTCTGCGAGCAGAATCTGtgattgtaaa
tattttatataagggaaaaaatataacaatattATATAAGTAGAAAATTA
CAGTACGGTTAACAACCCAGGAAATTCTAATTGTACATATAAAACCCTTT
TGTGTttacgttttatttttattataatgtAGTGTAGTTTTTGTTAATAA
TATACAGTTGACATtaaaag
Run BLAST on NCBI

protein sequence of TCONS_00072038-protein

>TCONS_00072038-protein ID=TCONS_00072038-protein|Name=TCONS_00072038-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
MFVETASEEFNNSQRMTNDNQNQILGKEKIENPATKYQITKERSDRQKEK
LDYLIQSMAPDKKKSTLANGQKGVSNWLGCFCNFLILYNEPRFSGFRMVA
KQWTFNT
Run BLAST on NCBI

transcript from alignment at scaffold_69:119484..120153

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072038 ID=TCONS_00072038|Name=TCONS_00072038|organism=Clytia hemisphaerica|type=transcript|length=670bp|location=Sequence derived from alignment at scaffold_69:119484..120153 (Clytia hemisphaerica)
cttttaATGTCAACTGTATATTATTAACAAAAACTACACTacattataat
aaaaataaaacgtaaACACAAAAGGGTTTTATATGTACAATTAGAATTTC
CTGGGTTGTTAACCGTACTGTAATTTTCTACTTATATaatattgttatat
tttttcccttatataaaatatttacaatcaCAGATTCTGCTCGCAGAATT
TCAGACTCTCAAGGTTATCTAAGGTGATACGACACCATTTGATTCCTGCT
CTCACTGGTGGTCGACTTGTCAGTGACGATGAACGCCAGCTTCTCTCACT
TCCACCACGACTCGGTGGCTTGGGATTGAAGATGTTTGTAGAAACAGCAT
CAGAAGAGTTCAATAATTCCCAACGAATGACGAATGACAACCAAAATCAA
ATTCTTGGTaaagagaaaattgaaaatccaGCGACCAAAtatcaaatcac
aaaagaaaggTCAGAtcgtcaaaaagaaaaactcgACTATCTAATTCAAT
CAATGGCACCCGACAAAAAGAAGAGTACCCTTGCGAACGGTCAAAAAGGC
GTATCCAACTGGCTTGGTTGCTTCTGCAATTTTCTCATTCTTTACAATGA
GCCACGATTTAGTGGGTTTCGGATGGTAGCCAAACAGTGGACCTTCAACA
CTTAATTTGTCCCACCAGCN

Coding sequence (CDS) from alignment at scaffold_69:119484..120153

>TCONS_00072038 ID=TCONS_00072038|Name=TCONS_00072038|organism=Clytia hemisphaerica|type=CDS|length=324bp|location=Sequence derived from alignment at scaffold_69:119484..120153 (Clytia hemisphaerica)
ATGTTTGTAGAAACAGCATCAGAAGAGTTCAATAATTCCCAACGAATGAC
GAATGACAACCAAAATCAAATTCTTGGTaaagagaaaattgaaaatccaG
CGACCAAAtatcaaatcacaaaagaaaggTCAGAtcgtcaaaaagaaaaa
ctcgACTATCTAATTCAATCAATGGCACCCGACAAAAAGAAGAGTACCCT
TGCGAACGGTCAAAAAGGCGTATCCAACTGGCTTGGTTGCTTCTGCAATT
TTCTCATTCTTTACAATGAGCCACGATTTAGTGGGTTTCGGATGGTAGCC
AAACAGTGGACCTTCAACACTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044734XLOC_044734Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072038-proteinTCONS_00072038-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072038-exon-scaffold_69-1491911889:119484..120153TCONS_00072038-exon-scaffold_69-1491911889:119484..120153Clytia hemisphaericaexon
TCONS_00072038-exon-scaffold_69-1510915933:119484..120153TCONS_00072038-exon-scaffold_69-1510915933:119484..120153Clytia hemisphaericaexon
TCONS_00072038-exon-scaffold_69-1575043694:119484..120153TCONS_00072038-exon-scaffold_69-1575043694:119484..120153Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_69supercontigscaffold_69:119484..120153 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.30829	1.1257	0.959851	0.137231	5.57583	4.02161	4.77953	5.36144	5.24652	5.20467	3.61441	3.6228	2.99581	4.50127	0.390192	0.667139	0.727086	0.818282	1.18744	0.519998	0.928227	1.41259	0.551483	1.07316	4.30081	4.48014	1.6884	1.76543	1.10848	1.07175
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072038 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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