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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072030 ID=TCONS_00072030|Name=TCONS_00072030|organism=Clytia hemisphaerica|type=transcript|length=2595bpRun BLAST on NCBI protein sequence of TCONS_00072030-protein >TCONS_00072030-protein ID=TCONS_00072030-protein|Name=TCONS_00072030-protein|organism=Clytia hemisphaerica|type=polypeptide|length=768bp MDVKVEHFSSKDDLTEEEKKALEDFVHRMGSENAFGDGIAVGEDEAIKFLRun BLAST on NCBI transcript from alignment at scaffold_69:25656..54595+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072030 ID=TCONS_00072030|Name=TCONS_00072030|organism=Clytia hemisphaerica|type=transcript|length=28940bp|location=Sequence derived from alignment at scaffold_69:25656..54595+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_69:25656..54595+ >TCONS_00072030 ID=TCONS_00072030|Name=TCONS_00072030|organism=Clytia hemisphaerica|type=CDS|length=32298bp|location=Sequence derived from alignment at scaffold_69:25656..54595+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00072030 vs. Swiss-Prot (Human)
Match: PTN9 (Tyrosine-protein phosphatase non-receptor type 9 OS=Homo sapiens GN=PTPN9 PE=1 SV=1) HSP 1 Score: 244.973 bits (624), Expect = 4.544e-70 Identity = 125/330 (37.88%), Postives = 189/330 (57.27%), Query Frame = 2
Query: 1334 GRQAFSIEDFMVNMNRAGKKGVHKEYEELRSLPPSGNFESTLYPVNTKKNRYNNILTFEETRVRLERRNDDPFSDYINANFVNGYDADKKFICTQGPTPFTFNDFWRMIWEQKVGVIVMVTRCVERNRIKCGTYWPQMPKESTVFGEIFVENIDQNVGEDFTINQFVLKHNNGEALRKLYHIQFTTWPDFGVLSSAAPILEAIEFIEERQPELTEQLQEEAKMNRAGGGLEGSGEYDTPEKPAVIVPPVVIHCSAGVGRTGTFCCLSNSVERLRKTGLIDIYSTVKSIREQRAFSVQTPEQYQFCYTGILEYVLKRRYL-KGEDTGSVEA 2320
G A +I++ + +N K+G+++EYE++R P G F ++ P N +KNRY ++ ++TRV+L +R+ +DYINA+F++GY +I TQGP T+ DFW M+WEQKV VIVM TR E R KCG YWP FG + V N+ + + + R++ H QF +WPD+GV SSAA +++ + + +Q + + G G+ PE PP+V+HCSAG+GRTGTFC L + +L + G ++++ TV +R QRAFS+QTPEQY FCY ILE+ K + G++ +VE+
Sbjct: 282 GPHAMTIQELVDYVNARQKQGIYEEYEDIRRENPVGTFHCSMSPGNLEKNRYGDVPCLDQTRVKLTKRSGHTQTDYINASFMDGYKQKNAYIGTQGPLENTYRDFWLMVWEQKVLVIVMTTRFEEGGRRKCGQYWPLEKDSRIRFGFLTVTNLGVENMNHYKKTTLEIHNTEERQKRQVTHFQFLSWPDYGVPSSAASLIDFLRVVRNQQ-----------SLAVSNMGARSKGQ--CPE------PPIVVHCSAGIGRTGTFCSLDICLAQLEELGTLNVFQTVSRMRTQRAFSIQTPEQYYFCYKAILEFAEKEGMVSSGQNLLAVES 592 HSP 2 Score: 197.208 bits (500), Expect = 1.163e-53 Identity = 100/234 (42.74%), Postives = 146/234 (62.39%), Query Frame = 2
Query: 194 DLTEEEKKALEDFVHRMGSENAFGDGIAVGEDEAIKFLMARKFDVGRAISLFHTNQTLRGKFDLEHLLPNRDPLAKELTSGKFTVSCKQGPEGDTLCIFYARKHLPKQVEHATVLQSIVFQLDSIMKKPDAQRHGLSFVYDMTASGYVNFDFDLAMKVLHLLKGGYPARLKHVYIVSAPFWFRASMTVLSSFLKDKIKDRVEVVKSIPDLYQHLPPEYLPKRLGGTVDHSHREW 895
+LT EE++A + F+ + + + + A+KFLMARKFDV RAI LFH+ + R K + L P+ +PL E+ SGKFT+ + P G ++ +F AR H P + VLQ++ + LD + + QR+GL F+YDM S Y NF+ DL KVL+LLKG +PARLK V IV AP WFR +++S LKDK+++R++++K+ ++ QHLP E LP+ LGG V W
Sbjct: 14 ELTPEEEQATKQFLEEINKWTVQYNVSPLSWNVAVKFLMARKFDVLRAIELFHSYRETRRKEGIVKLKPHEEPLRSEILSGKFTILNVRDPTGASIALFTARLHHPHKSVQHVVLQALFYLLDRAVDSFETQRNGLVFIYDMCGSNYANFELDLGKKVLNLLKGAFPARLKKVLIVGAPIWFRVPYSIISLLLKDKVRERIQILKT-SEVTQHLPRECLPENLGGYVKIDLATW 246 The following BLAST results are available for this feature:
BLAST of TCONS_00072030 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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