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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072022 ID=TCONS_00072022|Name=TCONS_00072022|organism=Clytia hemisphaerica|type=transcript|length=1222bp
NNCGAAATTCAAATTAGAAATCTTCGTGGAATCGGACTGGAGGAGAAACG
TTACGGCCCTATGCTCGCACCAGTTATTATGTCGAAATTGCCACAAGAAA
TAAAATTGTCGTTGACTAGAAAGTTCGGAAAGGATGTATGGGCAATCGAT
CACTCGAAGCCTTACAACAAGAAGTCGAAGCTCGAGAAAAGGTCCTTCTT
ACAGAGAATGAAGGTGTCGAAAATTACGAAAACCTAATGAGTACCGGTCG
TCCTACAGACAGCAAAAGAAGACAACCGTTCCGTACCTTTCCATGCGTTT
ACTGTGGAAACGCTTCACACAAAGCCTATCAATGTTCCAAGATATCGAAA
CCAGAAAGTCGAAAGGATTTTCTCATCAAACAGAAGCGATGTTTCAAGTG
CTTGAAAATAGGACATGATAGTAAAAGTTGTAGATCGATGCGCAGTTGTT
ATCATTGTCGAAAAAATCATCATAGCAGTATTtgtaaaacctttaagaaa
gaGGAAGATACGCCAGAAGATACTCAATCGAATTTAGCAAGCAGTTCGTG
TACCGTTTTGCTACAAACAGCCAAAGCCAAAATCGAAAATGTCGAGAAAA
ATCGTTCGTCCGAAAGTANACTCAGTCGAATTTAGCAAGCAGTTCGTGTA
CCGTTTTGCTACAAACAGCCAAAGCCAAAATCGAAAATGTCGAGAAAAAT
CGTTCGTCCGCCGAAAGTAGAATTTTCTTTGACCCTGATAGTCAGTTGAG
TTATGTTACACCCACATTGAGTCGAAAGCTGAATCTAAAGCAAATTGGAA
AAAAGTAACTTTGTATCCAATCGttcggaaacaacaaaaccGTCAAAACC
TTACCCTTGGTTGAATTTAACGTGAAAACTTCGAAAGGACAGGTTCCTGT
GCAAGCCTACGTATCCGAAATCAGTCAACCCGTTTCGAGACAGAACACAG
TCGAATGTCAAAAACgttttgaacatttgaaaggTTTAAAACTGGCAGAT
CTAAATCATGAAAAAGCCATCGATATTGATATTTTGATTTGCTCAAACTT
TTATTGGGATTTTATACACGCTGAAGGTGATGTTACTGGCAAGTCTGGCC
AGCCCATTGCTTTGAGTTCGTCGTTGGGATACGTTTTGAGTGGTCCTGct
gatttaaaagaaaagatttcgtccggaatttttttctcacatgTTTTGAA
AGCCGTCATTAGTGAAAATGAN Run BLAST on NCBI protein sequence of TCONS_00072022-protein >TCONS_00072022-protein ID=TCONS_00072022-protein|Name=TCONS_00072022-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
MGNRSLEALQQEVEAREKVLLTENEGVENYENLMSTGRPTDSKRRQPFRT
FPCVYCGNASHKAYQCSKISKPESRKDFLIKQKRCFKCLKIGHDSKSCRS
MRSCYHCRKNHHSSICKTFKKEEDTPEDTQSNLASSSCTVLLQTAKAKIE
NVEKNRSSESXLSRI Run BLAST on NCBI transcript from alignment at scaffold_68:98318..99539 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072022 ID=TCONS_00072022|Name=TCONS_00072022|organism=Clytia hemisphaerica|type=transcript|length=1222bp|location=Sequence derived from alignment at scaffold_68:98318..99539 (Clytia hemisphaerica)
NTCATTTTCACTAATGACGGCTTTCAAAAcatgtgagaaaaaaattccgg
acgaaatcttttcttttaaatcagCAGGACCACTCAAAACGTATCCCAAC
GACGAACTCAAAGCAATGGGCTGGCCAGACTTGCCAGTAACATCACCTTC
AGCGTGTATAAAATCCCAATAAAAGTTTGAGCAAATCAAAATATCAATAT
CGATGGCTTTTTCATGATTTAGATCTGCCAGTTTTAAAcctttcaaatgt
tcaaaacGTTTTTGACATTCGACTGTGTTCTGTCTCGAAACGGGTTGACT
GATTTCGGATACGTAGGCTTGCACAGGAACCTGTCCTTTCGAAGTTTTCA
CGTTAAATTCAACCAAGGGTAAGGTTTTGACggttttgttgtttccgaaC
GATTGGATACAAAGTTACTTTTTTCCAATTTGCTTTAGATTCAGCTTTCG
ACTCAATGTGGGTGTAACATAACTCAACTGACTATCAGGGTCAAAGAAAA
TTCTACTTTCGGCGGACGAACGATTTTTCTCGACATTTTCGATTTTGGCT
TTGGCTGTTTGTAGCAAAACGGTACACGAACTGCTTGCTAAATTCGACTG
AGTNTACTTTCGGACGAACGATTTTTCTCGACATTTTCGATTTTGGCTTT
GGCTGTTTGTAGCAAAACGGTACACGAACTGCTTGCTAAATTCGATTGAG
TATCTTCTGGCGTATCTTCCtctttcttaaaggttttacaAATACTGCTA
TGATGATTTTTTCGACAATGATAACAACTGCGCATCGATCTACAACTTTT
ACTATCATGTCCTATTTTCAAGCACTTGAAACATCGCTTCTGTTTGATGA
GAAAATCCTTTCGACTTTCTGGTTTCGATATCTTGGAACATTGATAGGCT
TTGTGTGAAGCGTTTCCACAGTAAACGCATGGAAAGGTACGGAACGGTTG
TCTTCTTTTGCTGTCTGTAGGACGACCGGTACTCATTAGGTTTTCGTAAT
TTTCGACACCTTCATTCTCTGTAAGAAGGACCTTTTCTCGAGCTTCGACT
TCTTGTTGTAAGGCTTCGAGTGATCGATTGCCCATACATCCTTTCCGAAC
TTTCTAGTCAACGACAATTTTATTTCTTGTGGCAATTTCGACATAATAAC
TGGTGCGAGCATAGGGCCGTAACGTTTCTCCTCCAGTCCGATTCCACGAA
GATTTCTAATTTGAATTTCGNN Coding sequence (CDS) from alignment at scaffold_68:98318..99539 >TCONS_00072022 ID=TCONS_00072022|Name=TCONS_00072022|organism=Clytia hemisphaerica|type=CDS|length=498bp|location=Sequence derived from alignment at scaffold_68:98318..99539 (Clytia hemisphaerica)
CTAAATTCGACTGAGTNTACTTTCGGACGAACGATTTTTCTCGACATTTT
CGATTTTGGCTTTGGCTGTTTGTAGCAAAACGGTACACGAACTGCTTGCT
AAATTCGATTGAGTATCTTCTGGCGTATCTTCCtctttcttaaaggtttt
acaAATACTGCTATGATGATTTTTTCGACAATGATAACAACTGCGCATCG
ATCTACAACTTTTACTATCATGTCCTATTTTCAAGCACTTGAAACATCGC
TTCTGTTTGATGAGAAAATCCTTTCGACTTTCTGGTTTCGATATCTTGGA
ACATTGATAGGCTTTGTGTGAAGCGTTTCCACAGTAAACGCATGGAAAGG
TACGGAACGGTTGTCTTCTTTTGCTGTCTGTAGGACGACCGGTACTCATT
AGGTTTTCGTAATTTTCGACACCTTCATTCTCTGTAAGAAGGACCTTTTC
TCGAGCTTCGACTTCTTGTTGTAAGGCTTCGAGTGATCGATTGCCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072022-exon-scaffold_68-1491911889:98318..99539 | TCONS_00072022-exon-scaffold_68-1491911889:98318..99539 | Clytia hemisphaerica | exon |
| TCONS_00072022-exon-scaffold_68-1510915933:98318..99539 | TCONS_00072022-exon-scaffold_68-1510915933:98318..99539 | Clytia hemisphaerica | exon |
| TCONS_00072022-exon-scaffold_68-1575043694:98318..99539 | TCONS_00072022-exon-scaffold_68-1575043694:98318..99539 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_68 | supercontig | scaffold_68:98318..99539 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001878 | Znf_CCHC |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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