TCONS_00072019 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072019
Unique NameTCONS_00072019
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length775

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072019 ID=TCONS_00072019|Name=TCONS_00072019|organism=Clytia hemisphaerica|type=transcript|length=775bp
NNTAGCCTCGAGAAAGCACCTTGGTTTAATGGGTTTACAGAGAGACTTGT
GAAATCCGTGAAAACGTGTTTGAATAAAGCTTTGAACAACAAAACGCTGA
AGTACAATGAATTCCTTTCGTTATTAGTTGAAATTGAACGAACAATCAAC
AACCTTCCTTTAACCTTCATCTATGACGAATTGACAGAAGAACCTCTCAC
CCCGAATCATTTATTATACGGTAAACGTCTCGGACGTAACACAAATACAA
CAAACGACAACAGTGACAGTTTTGAGTTGTCAGAAAAAAAGAAGCAAGCA
ATTGAACACTTTTGGAAACGTTGGAAAACAGAATACTTACTCGAGTTGAG
AGAAACACACAAGAAACTTGCACGAAAGAACTCAAGCGAAATGATCAACG
AGAATGATATCGTTGTAATCAACGAGGAAAGGTAGAGTGAGTAAATTGTT
ACGAGGAAGAGATGGTAAAGTTCGCGGAGCCGAACTCGTCGTTGTAAACA
AATACGGTAACGGAATTCTCCGAAGACCTATCAATAAACTATTTCCGTTT
GAGTATCATCACTCACGAGTAAGTGATGGCAAGAACAATCAAgaagtgaa
aatcaaattcatcgACGAACGTGACCTCCCCTCTCGTGCGTGGGAGTGTG
ATATTTTTATTGTATTATATTGTTTTAGGTCATCGAGACTAATCGAGGCT
GATTTAgtgcttttgttaattttgtttatcaCAGTCCTCTAAAGAAAGTC
ATTGAGACAACAcgtaaaatatttc
Run BLAST on NCBI

protein sequence of TCONS_00072019-protein

>TCONS_00072019-protein ID=TCONS_00072019-protein|Name=TCONS_00072019-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
XSLEKAPWFNGFTERLVKSVKTCLNKALNNKTLKYNEFLSLLVEIERTIN
NLPLTFIYDELTEEPLTPNHLLYGKRLGRNTNTTNDNSDSFELSEKKKQA
IEHFWKRWKTEYLLELRETHKKLARKNSSEMINENDIVVINEER
Run BLAST on NCBI

transcript from alignment at scaffold_68:95252..96026

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072019 ID=TCONS_00072019|Name=TCONS_00072019|organism=Clytia hemisphaerica|type=transcript|length=775bp|location=Sequence derived from alignment at scaffold_68:95252..96026 (Clytia hemisphaerica)
gaaatattttacgTGTTGTCTCAATGACTTTCTTTAGAGGACTGtgataa
acaaaattaacaaaagcacTAAATCAGCCTCGATTAGTCTCGATGACCTA
AAACAATATAATACAATAAAAATATCACACTCCCACGCACGAGAGGGGAG
GTCACGTTCGTcgatgaatttgattttcacttcTTGATTGTTCTTGCCAT
CACTTACTCGTGAGTGATGATACTCAAACGGAAATAGTTTATTGATAGGT
CTTCGGAGAATTCCGTTACCGTATTTGTTTACAACGACGAGTTCGGCTCC
GCGAACTTTACCATCTCTTCCTCGTAACAATTTACTCACTCTACCTTTCC
TCGTTGATTACAACGATATCATTCTCGTTGATCATTTCGCTTGAGTTCTT
TCGTGCAAGTTTCTTGTGTGTTTCTCTCAACTCGAGTAAGTATTCTGTTT
TCCAACGTTTCCAAAAGTGTTCAATTGCTTGCTTCTTTTTTTCTGACAAC
TCAAAACTGTCACTGTTGTCGTTTGTTGTATTTGTGTTACGTCCGAGACG
TTTACCGTATAATAAATGATTCGGGGTGAGAGGTTCTTCTGTCAATTCGT
CATAGATGAAGGTTAAAGGAAGGTTGTTGATTGTTCGTTCAATTTCAACT
AATAACGAAAGGAATTCATTGTACTTCAGCGTTTTGTTGTTCAAAGCTTT
ATTCAAACACGTTTTCACGGATTTCACAAGTCTCTCTGTAAACCCATTAA
ACCAAGGTGCTTTCTCGAGGCTANN

Coding sequence (CDS) from alignment at scaffold_68:95252..96026

>TCONS_00072019 ID=TCONS_00072019|Name=TCONS_00072019|organism=Clytia hemisphaerica|type=CDS|length=435bp|location=Sequence derived from alignment at scaffold_68:95252..96026 (Clytia hemisphaerica)
CTACCTTTCCTCGTTGATTACAACGATATCATTCTCGTTGATCATTTCGC
TTGAGTTCTTTCGTGCAAGTTTCTTGTGTGTTTCTCTCAACTCGAGTAAG
TATTCTGTTTTCCAACGTTTCCAAAAGTGTTCAATTGCTTGCTTCTTTTT
TTCTGACAACTCAAAACTGTCACTGTTGTCGTTTGTTGTATTTGTGTTAC
GTCCGAGACGTTTACCGTATAATAAATGATTCGGGGTGAGAGGTTCTTCT
GTCAATTCGTCATAGATGAAGGTTAAAGGAAGGTTGTTGATTGTTCGTTC
AATTTCAACTAATAACGAAAGGAATTCATTGTACTTCAGCGTTTTGTTGT
TCAAAGCTTTATTCAAACACGTTTTCACGGATTTCACAAGTCTCTCTGTA
AACCCATTAAACCAAGGTGCTTTCTCGAGGCTANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044719XLOC_044719Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072019-exon-scaffold_68-1491911889:95252..96026TCONS_00072019-exon-scaffold_68-1491911889:95252..96026Clytia hemisphaericaexon
TCONS_00072019-exon-scaffold_68-1510915933:95252..96026TCONS_00072019-exon-scaffold_68-1510915933:95252..96026Clytia hemisphaericaexon
TCONS_00072019-exon-scaffold_68-1575043694:95252..96026TCONS_00072019-exon-scaffold_68-1575043694:95252..96026Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072019-proteinTCONS_00072019-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_68supercontigscaffold_68:95252..96026 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.97076	2.20249	1.89606	1.87473	22.7496	20.8201	21.6268	26.8392	6.77907	9.6069	14.0736	6.09557	8.61797	7.69082	9.41327	8.77952	4.62055	6.90696	5.10005	6.36319	8.21442	9.13576	4.58805	5.93891	5.66817	9.58534	10.5227	10.7235	10.1502	7.96312
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072019 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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