TCONS_00072014 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072014
Unique NameTCONS_00072014
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1268

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072014 ID=TCONS_00072014|Name=TCONS_00072014|organism=Clytia hemisphaerica|type=transcript|length=1268bp
GTGACAGGTGGCTTGGAATAGTCACCATCCCTCCACcacaaaaattgatg
aaaccGACGTTGACTTTCAGGaattttgatttggaaaaacATGGATTCAA
TATCAGCTGTGAAAGCAACATGTTCCTGGCGAAATCTCATCAAAACTCCA
ATCAAATGGTTAGCTAGATCAGGACCTTGCACAAGCTCTTTGTTCATACA
GAAACCTTTGTATGACGAACTACAATCAAAAACAACtctgattttatttt
tcgtagggtggtatacaccatgatGTGGAATGTACCAATTCTGGCCCTCA
GGATACGATGACGTAACCTCTTGAGCATAACCTTTCTCGATGATATTCTT
CATGAAACTAACATAATCAGAGTGAAACTGCGCAGaagattgaaattttc
ttttcaacgaATCCATTCTTTTCAAAGCTTGTGGAAAATTGTCAGGGAAG
GACTGATTCTTATTTCTAAATGGTAGTGGAACATGNGTGAAACTGCGCAG
aagattgaaattttcttttcaacgaATCCATTCTTTTCAAAGCTTGTGGA
AAATTGTCAGGGAAGGACTGATTCTTATTTCTAAATGGTAGCGGAACATG
ATAATGACCATCAATGAACTCTGCAGACTCAACTATTTCAAGGAAATGCA
GATCATCTTGTGAAAATACCTCATAATCAGACATGCGAGTTTCAGGCACA
GTTTCAATAGAAAATAGGTTCTTAAGCATAGTCTCAATTCCAGAATCCTT
AACTCTTGGCTCTTCAACCAACAGATGATTGGATCTACCATTTGAATTCA
CCGAAATTTTACAACATGCTACAGACTTAGATCTAGGAGAACAAATTGGT
CCTACGACACACCAGCCTAACTTTGTCTTGTAAGCAAAGGGACCATCATC
TTGGCTAGCAATTGTTTTCACAGGCTCAATAGCTTTAGGACAATTTCCTC
CAACCAAAATTCCTATTTTCAAAGAAGCAGTGTTTGGAAGTTCAGACTCT
ATAGATTTCAAATAGGGCCAAGCTTGAATAGACTTAGATGTAGGAATCTC
ACTTTGATCAACTGGAATGTAAGATTTACTAAAAAGTTTTGGTAGAGATG
TCCAACTTCCATCACCAGCATGTAATCCTTTCACTTTCAGTCCATATACA
ACATGGCAGGCTTCAGTCTGTCAGGAAGTGATTGTGTCAACAGTCAAATC
AGTACGTTCAGTTGGTATCGACAACATTGATAAAATATCTTCAGAAATGA
AGGAAGCTTGTGAACAAT
Run BLAST on NCBI

transcript from alignment at scaffold_68:108455..109879-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072014 ID=TCONS_00072014|Name=TCONS_00072014|organism=Clytia hemisphaerica|type=transcript|length=1425bp|location=Sequence derived from alignment at scaffold_68:108455..109879- (Clytia hemisphaerica)
GTGACAGGTGGCTTGGAATAGTCACCATCCCTCCACCACAAAAATTGATG
AAACCGACGTTGACTTTCAGGAATTTTGATTTGGAAAAACATGGATTCAA
TATCAGCTGTGAAAGCAACATGTTCCTGGCGAAATCTCATCAAAACTCCA
ATCAAATGGTTAGCTAGATCAGGACCTTGCACAAGCTCTTTGTTCATACA
GAAACCTTTGTATGACGAACTACAATCAAAAACAACTCTGATTTTATTTT
TCGTAGGGTGGTATACACCATGATGTGGAATGTACCAATTCTGGCCCTCA
GGATACGATGACGTAACCTCTTGAGCATAACCTTTCTCGATGATATTCTT
CATGAAACTAACATAATCAGAGTGAAACTGCGCAGAAGATTGAAATTTTC
TTTTCAACGAATCCATTCTTTTCAAAGCTTGTGGAAAATTGTCAGGGAAG
GACTGATTCTTATTTCTAAATGGTAGTGGAACATGNGTGAAACTGCGCAG
AAGATTGAAATTTTCTTTTCAACGAATCCATTCTTTTCAAAGCTTGTGGA
AAATTGTCAGGGAAGGACTGATTCTTATTTCTAAATGGTAGCGGAACATG
ATAATGACCATCAATGAACTCTGCAGACTCAACTATTTCAAGGAAATGCA
GATCATCTTGTGAAAATACCTCATAATCAGACATGCGAGTTTCAGGCACA
GTTTCAATAGAAAATAGGTTCTTAAGCATATTCTCAATTCCAGAATCCTT
AACTCTTGGCTCTTCGACCAACAGATGATTGGATCTACCATTAGAATTCA
CCGAAATTCTACAACATGCTACAGACTTAGATCTAGGAGAACAAATTGGT
CCTACAANTTTCAATAGAAAATAGGTTCTTAAGCATAGTCTCAATTCCAG
AATCCTTAACTCTTGGCTCTTCAACCAACAGATGATTGGATCTACCATTT
GAATTCACCGAAATTTTACAACATGCTACAGACTTAGATCTAGGAGAACA
AATTGGTCCTACGACACACCAGCCTAACTTTGTCTTGTAAGCAAAGGGAC
CATCATCTTGGCTAGCAATTGTTTTCACAGGCTCAATAGCTTTAGGACAA
TTTCCTCCAACCAAAATTCCTATTTTCAAAGAAGCAGTGTTTGGAAGTTC
AGACTCTATAGATTTCAAATAGGGCCAAGCTTGAATAGACTTAGATGTAG
GAATCTCACTTTGATCAACTGGAATGTAAGATTTACTAAAAAGTTTTGGT
AGAGATGTCCAACTTCCATCACCAGCATGTAATCCTTTCACTTTCAGTCC
ATATACAACATGGCAGGCTTCAGTCTGTCAGGAAGTGATTGTGTCAACAG
TCAAATCAGTACGTTCAGTTGGTATCGACAACATTGATAAAATATCTTCA
GAAATGAAGGAAGCTTGTGAACAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044714XLOC_044714Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072014-exon-scaffold_68-1575043694:109163..109879TCONS_00072014-exon-scaffold_68-1575043694:109163..109879Clytia hemisphaericaexon
TCONS_00072014-exon-scaffold_68-1575043694:108455..109005TCONS_00072014-exon-scaffold_68-1575043694:108455..109005Clytia hemisphaericaexon
TCONS_00072014-exon-scaffold_68-1510915933:109163..109879TCONS_00072014-exon-scaffold_68-1510915933:109163..109879Clytia hemisphaericaexon
TCONS_00072014-exon-scaffold_68-1510915933:108455..109005TCONS_00072014-exon-scaffold_68-1510915933:108455..109005Clytia hemisphaericaexon
TCONS_00072014-exon-scaffold_68-1491911889:109163..109879TCONS_00072014-exon-scaffold_68-1491911889:109163..109879Clytia hemisphaericaexon
TCONS_00072014-exon-scaffold_68-1491911889:108455..109005TCONS_00072014-exon-scaffold_68-1491911889:108455..109005Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_68supercontigscaffold_68:108455..109879 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.03833	3.91558	2.01174	0.625622	0.385953	0.564684	0.430884	0.658526	0.21469	0.532261	0.0409445	0.46314	0.148084	0.1739	0.163112	0.57919	0.491524	0.349089	0.210603	0.460415	0.347859	0.337909	0.938563	0.881686	0.410984	0.104653	0.555653	0.548776	1.3589	1.975
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072014 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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