TCONS_00072013 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072013
Unique NameTCONS_00072013
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length883

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072013 ID=TCONS_00072013|Name=TCONS_00072013|organism=Clytia hemisphaerica|type=transcript|length=883bp
CAAAATACAACTAACAGGTGGATTTGAAACTTCAGGCTTTTTAGGACAAG
GTCTGACATCAGGTTCTTTAGATTCAGAGCTGTCTTTCTTCGAGTCTTTA
GGAGGTAGACGTGGATGATGACGAAATCTCATTCCATGAGTAATAGTCGG
ATGCTTTTTATTACAAACCAGACAAGTTCTTCGATTTTTACAACTTGAAG
CAAGATGACCTTTCTCAAGACATCCGAAACAAAGCTTTTCCTTCAATATA
AATCGAAACTTTTCCTCCATTGTTTTCCCTTTAAAGATTGGACAAACTTC
AATATCATGGTCTACGTCACAAGCCGAACAAAGAAACGTCTTATAACCTT
TGTACCATCCTTTCTATCGTGTAATCTTTTTGGTTTGAAATCACTACGAC
CAACCCTAGAATCATCATAAAACCGATCTTTAAAAGCTTCCCTTGAGAAA
AGTGGATCACTTGCAACTATCATTTCATTTTCCACGAACAAAAGCACATC
CTTAAAACAGGGTTCACGATCAGACTCAGTTCGAATATTTATCACCTTTC
TATTCCATTTATCACGACAATGCAGTGGAAGTTTACTGGTTATTATGCAA
AGATTATCAGCTGTATCAAAACTATTCCAAAGTTTATTTNTTCACGATCA
GACTCAGTTCGAATGTTTATCACCTTTCTATTCCATTTATCACGACAATG
CAGTGGAAGTTTACTGGTTATTATGCAAAGATTATCAGCCGTATCAAAAC
TATTCCAAAGTTTATTCTCAATGACAGAACCACACTTaagtaaaaatgaa
taaaatttacCAAAGGCAGAGGAGTCTCCTGGTTTAATAGCTTCCCAACG
ATCTAgttcctctttgaaaaaagtcataattct
Run BLAST on NCBI

transcript from alignment at scaffold_68:106755..108234-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072013 ID=TCONS_00072013|Name=TCONS_00072013|organism=Clytia hemisphaerica|type=transcript|length=1480bp|location=Sequence derived from alignment at scaffold_68:106755..108234- (Clytia hemisphaerica)
CAAAATACAACTAACAGGTGGATTTGAAACTTCAGGCTTTTTAGGACAAG
GTCTGACATCAGGTTCTTTAGATTCAGAGCTGTCTTTCTTCGAGTCTTTA
GGAGGTAGACGTGGATGATGACGAAATCTCATTCCATGAGTAATAGTCGG
ATGCTTTTTATTACAAACCAGACAAGTTCTTCGATTTTTACAACTTGAAG
CAAGATGACCTTTCTCAAGACATCCGAAACAAAGCTTTTCCTTCAATATA
AATCGAAACTTTTCCTCCATTGTTTTCCCTTTAAAGATTGGACAAACTTC
AATATCATGGTCTACGTCACAAGCCGAACAAAGAAACGTCTTATAACCTT
TGTACCATCCTTTCTATCGTGTAATCTTTTTGGTTTGAAATCACTACGAC
CAACCCTAGAATCATCATAAAACCGATCTTTAAAAGCTTCCCTTGAGAAA
AGTGGATCACTTGCAACTATCATTTCATTTTCCACGAACAAAAGCACATC
CTTAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCACGATCAGACTCAGT
TCGAATGTTTATCACCTTTCTATTCCATTTATCACGACAATGCAGTGGAA
GTTTACTGGTTATTATGCAAAGATTATCAGCCGTATCAAAACTATTCCAA
AGTTTATTCTCAATGACAGAGCCACATTTAAGTAGAAATGAATAAAATTT
ACCAAAGGCAGAGGAGTCTCCTGGTTTAATAGCTTCCCAACGATCTAGTT
CCTTTTTGAAAAAAGTCATAATTCGGNTAAAGATTGGACAAACTTCAATA
TCATGGTCTACGTCACAAGCCGAACAAAGAAACGTCTTAAAACCCTTTGT
ACCATCCTTTCTATCGTGCAATCTTTTTGGTTTGAAATCACTACGACCAG
CTCTAGAATCATCATAAAACCGATCTTTAAAAGCTTCCCTTGAGAAAAGC
GGATCACTTGCAACTATCATTTCATTTTCCACGAACAAAAGCACATCCTT
AAAACAGGGTTCACGATCAGACTCAGTTCGAATATTTATCACCTTTCTAT
TCCATTTATCACGACAATGCAGTGGAAGTTTACTGGTTATTATGCAAAGA
TTATCAGCTGTATCAAAACTATTCCAAAGTTTATTTNTTCACGATCAGAC
TCAGTTCGAATGTTTATCACCTTTCTATTCCATTTATCACGACAATGCAG
TGGAAGTTTACTGGTTATTATGCAAAGATTATCAGCCGTATCAAAACTAT
TCCAAAGTTTATTCTCAATGACAGAACCACACTTAAGTAAAAATGAATAA
AATTTACCAAAGGCAGAGGAGTCTCCTGGTTTAATAGCTTCCCAACGATC
TAGTTCCTCTTTGAAAAAAGTCATAATTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044713XLOC_044713Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072013-exon-scaffold_68-1575043694:107738..108234TCONS_00072013-exon-scaffold_68-1575043694:107738..108234Clytia hemisphaericaexon
TCONS_00072013-exon-scaffold_68-1575043694:106755..107140TCONS_00072013-exon-scaffold_68-1575043694:106755..107140Clytia hemisphaericaexon
TCONS_00072013-exon-scaffold_68-1510915933:107738..108234TCONS_00072013-exon-scaffold_68-1510915933:107738..108234Clytia hemisphaericaexon
TCONS_00072013-exon-scaffold_68-1510915933:106755..107140TCONS_00072013-exon-scaffold_68-1510915933:106755..107140Clytia hemisphaericaexon
TCONS_00072013-exon-scaffold_68-1491911889:107738..108234TCONS_00072013-exon-scaffold_68-1491911889:107738..108234Clytia hemisphaericaexon
TCONS_00072013-exon-scaffold_68-1491911889:106755..107140TCONS_00072013-exon-scaffold_68-1491911889:106755..107140Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_68supercontigscaffold_68:106755..108234 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.57588	5.10979	2.28069	1.22447	0.638863	0.449206	0.271414	0.190067	0.26614	0.659315	0	0.420676	0.175038	0.327202	0.239115	0.358186	0.197574	0.121504	0.615504	0.87595	0.314402	0.53857	1.08636	1.08189	0.169544	0.255471	0.971902	0.770288	3.91059	3.40445
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072013 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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