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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072008 ID=TCONS_00072008|Name=TCONS_00072008|organism=Clytia hemisphaerica|type=transcript|length=2032bp
TGCGTCTTGACATCCTTGAGTTAAATGGTACGAGTGATGCTATAAAAATA
TCTTGAGAAAGCTCGCTGATAGTTTTATTTTATACTTTCGTAGAGATAAA
GGAAAAAGAGAAATGGTACCGAAAagccaaaaacaaaacaaacttgaAAT
CGTGGAATACAACATTGAAAAGCATTCTGGGGAggttcaaaaaattttgg
atgaacACTTAATACCAATTTACTTAAAACGTATGGAAATCACACAAGAT
GAAAGATTGAAATATGCACATATTGAAAATGTCTTACATCCTAACCTAGC
AAAGAAtcccaaatttaaaaatttttctatgGTAACTTTAGACGAGACTG
GTAAAGTCGTTGGTCTCGGATTAAGCTACATGGTAACTAAGCAAGACTTT
CAAGAGACTTTTATTGACCTTAATCTTCGGATCGTGAATGACTCAAGCTA
CAAAGAAAGTATCCGAAAATATTGCCAACACAGATATGCAGTTTGTTATC
CACTTGCAAGATTTTTTGACGAATACAATGTTGATCAGATGGTTTATACA
GAAGATGCCGTTGTCTTACCTCAATATAGAGGTCGAGGAATAAATAATAA
CATGTATAAATTAATGATGGCGGAGTTTGGTCACAAGCATGCTTTCTTTG
CCGAAGAGATGATGCCTGTACAAAATATTGTGACGTCAGGAGGACTCAAA
CATGAGTTAGATGTCATAGGAACCTGGGACTCAGATGGATGGTTATGTAT
TGACCGACAATTATCTTATGATGGTTATCTTTGCCCGTTATTTTTTAAAC
CACTTACACATGTACATAAATCTAAATTGTAATTTGTAGCTCTACCCTAA
ACACCTCTGTGTCACAGACCCGCTAGGACCCGTAGCCCCACTGGAAAATT
TGCCAAAAAATTCGTCCCCAGTAGGAAAATACCCTGAAATTTCAGCCCCA
CTGGGAATTTGACTTTGATTTCATCCCCATTCGAGATCCAATGTTTAAAA
ATTGCACTTCAAAACCATCCTCACTGGATTTTTTAACCTTGGAACAAAAA
TTAAATAGAATTTCTATCCCCATTGAGATTGCAATATGAATTTTTATCCC
CACTGAGGAAAAAGTTCCACTGGGGCTGTGTGACAGGGGTGTCTCTAAAT
ATGTGTCTTTTTCTTCACAGAATTTTTCTATATTCTTTTACTTGTCAGAA
ACACAATGATTCAGATTTGCAAATCTTGACCAACATTCAGTTGAATCCTG
AGAATCTTTGTTGGGAAGCCGAATTGTAAAGGCTCTGAGAATtgtaattt
gaattttgattcaTCATTACTctgtataattttttaattttgttgataag
aatttttttacattttcgaTTTGTCAAGAATACAATGATTTGCATATCAT
GACCAATAATTCCGataatttcaataatttgtATTGACAGGGTATTCTAT
ATATCAAGGTAGACTTAAACTTTGTATCAGACGTTTATCAGACGTATCAG
CCATAGACGTTTATCAGATGTTTACTATCTCGCTACGTTTTGCTTTTAGT
ACAAAAATAACGACATACAGGTCCTTTCTTGGTGTCTTAGTactttaaaa
atttaagaaGTAGTTTGCACTGTGCAAGGCTGAAGAATCATATAGCTGGG
TCTAACTATATTGTTCACGGATCTCTCAAATCCGTACAGTAATTTTGTAA
AAAGGCggaaaaataacgaaataaaTGTGTTAAATATTCAAACTTACACA
ACATGTCTTTTACTTATCATCACAATGAGTTTATAAGCCGGAGAGGTAAT
TTGGATACCGGGTTGGTGCGAGTCTCCGGGTATGTCTTTGTTAGGCCTCA
AACAAAAGATCAAAGGACAGAACCATATGTAAAAGTCATTCAAGGTCTTC
AAGAGAATAAACTGTGCCAAtcactttttgtaaaataaccaactaaagat
agaagaaaataatttttatccaCATCTGATGATCGTCTTGTGCGTGAAAC
ACCGTGTAAtggttgtttttaatttttgatga Run BLAST on NCBI protein sequence of TCONS_00072008-protein >TCONS_00072008-protein ID=TCONS_00072008-protein|Name=TCONS_00072008-protein|organism=Clytia hemisphaerica|type=polypeptide|length=239bp
MVPKSQKQNKLEIVEYNIEKHSGEVQKILDEHLIPIYLKRMEITQDERLK
YAHIENVLHPNLAKNPKFKNFSMVTLDETGKVVGLGLSYMVTKQDFQETF
IDLNLRIVNDSSYKESIRKYCQHRYAVCYPLARFFDEYNVDQMVYTEDAV
VLPQYRGRGINNNMYKLMMAEFGHKHAFFAEEMMPVQNIVTSGGLKHELD
VIGTWDSDGWLCIDRQLSYDGYLCPLFFKPLTHVHKSKL Run BLAST on NCBI transcript from alignment at scaffold_67:4256..6392+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072008 ID=TCONS_00072008|Name=TCONS_00072008|organism=Clytia hemisphaerica|type=transcript|length=2137bp|location=Sequence derived from alignment at scaffold_67:4256..6392+ (Clytia hemisphaerica)
TGCGTCTTGACATCCTTGAGTTAAATGGTACGAGTGATGCTATAAAAATA
TCTTGAGAAAGCTCGCTGATAGTTTTATTTTATACTTTCGTAGAGATAAA
GGAAAAAGAGAAATGGTACCGAAAagccaaaaacaaaacaaacttgaAAT
CGTGGAATACAACATTGAAAAGCATTCTGGGGAggttcaaaaaattttgg
atgaacACTTAATACCAATTTACTTAAAACGTATGGAAATCACACAAGAT
GAAAGATTGAAATATGCACATATTGAAAATGTCTTACATCCTAACCTAGC
AAAGAAtcccaaatttaaaaatttttctatgGTAACTTTAGACGAGACTG
GTAAAGTCGTTGGTCTCGGATTAAGCTACATGGTAACTAAGCAAGACTTT
CAAGAGACTTTTATTGACCTTAATCTTCGGATCGTGAATGACTCAAGCTA
CAAAGAAAGTATCCGAAAATATTGCCAACACAGATATGCAGTTTGTTATC
CACTTGCAAGATTTTTTGACGAATACAATGTTGATCAGATGGTTTATACA
GAAGATGCCGTTGTCTTACCTCAATATAGAGGTCGAGGAATAAATAATAA
CATGTATAAATTAATGATGGCGGAGTTTGGTCACAAGCATGCTTTCTTTG
CCGAAGAGATGATGCCTGTACAAAATATTGTGACGTCAGGAGGACTCAAA
CATGAGTTAGATGTCATAGGAACCTGGGACTCAGATGGATGGTTATGTAT
TGACCGACAATTATCTTATGATGGTTATCTTTGCCCGTTATTTTTTAAAC
CACTTACACATGTACATAAATCTAAATTGTAATTTGTAGCTCTACCCTAA
ACACCTCTGTGTCACAGACCCGCTAGGACCCGTAGCCCCACTGGAAAATT
TGCCAAAAAATTCGTCCCCAGTAGGAAAATACCCTGAAATTTCAGCCCCA
CTGGGAATTTGACTTTGATTTCATCCCCATTCGAGATCCAATGTTTAAAA
ATTGCACTTCAAAACCATCCTCACTGGATTTTTTAACCTTGGAACAAAAA
TTAAATAGAATTTCTATCCCCATTGAGATTGCAATATGAATTTTTATCCC
CACTGAGGAAAAAGTTCCACTGGGGCTGTGTGACAGGGGTGTCTCTAAAT
ATGTGTCTTTTTCTTCACAGAATTTTTCTATATTCTTTTACTTGTCAGAA
ACACAATGATTCAGATTTGCAAATCTTGACCAACATTCAGTTGAATCCTG
AGAATCTTTGTTGGGAAGCCGAATTGTAAAGGCTCTGAGAATtgtaattt
gaattttgattcaTCATTACTctgtataattttttaattttgttgataag
aatttttttacattttcgaTTTGTCAAGAATACAATGATTTGCATATCAT
GACCAATAATTCCGataatttcaataatttgtATTGACAGGGTATTCTAT
ATATCAAGGTAGACTTAAACTTTGTATCAGACGTTTATCAGACGTATCAG
CCATAGACGTTTATCAGATGTTTACTATCTCGCTACGTTTTGCTTTTAGT
ACAAAAATAACGACATACAGGTCCTTTCTTGGTGTCTTAGTactttaaaa
atttaagaaGTAGTTTGCACTGTGCAAGGCTGAAGAATCATATAGCTGGG
TCTAACTATATTGTTCACGGATCTCTCAAATCCGTACAGTAATTTTGTAA
AAAGGCggaaaaataacgaaataaaTGTGTTAAATATTCAAACTTGTTTC
TTTACTGACATTGTAATTATCAAactgaatacaaaatttttgtacaaata
ttagtaattttaattaaaatagaaataaattaAAGACTATTATTAAACAG
ACACAACATGTCTTTTACTTATCATCACAATGAGTTTATAAGCCGGAGAG
GTAATTTGGATACCGGGTTGGTGCGAGTCTCCGGGTATGTCTTTGTTAGG
CCTCAAACAAAAGATCAAAGGACAGAACCATATGTAAAAGTCATTCAAGG
TCTTCAAGAGAATAAACTGTGCCAAtcactttttgtaaaataaccaacta
aagatagaagaaaataatttttatccaCATCTGATGATCGTCTTGTGCGT
GAAACACCGTGTAAtggttgtttttaatttttgatga Coding sequence (CDS) from alignment at scaffold_67:4256..6392+ >TCONS_00072008 ID=TCONS_00072008|Name=TCONS_00072008|organism=Clytia hemisphaerica|type=CDS|length=720bp|location=Sequence derived from alignment at scaffold_67:4256..6392+ (Clytia hemisphaerica)
ATGGTACCGAAAagccaaaaacaaaacaaacttgaAATCGTGGAATACAA
CATTGAAAAGCATTCTGGGGAggttcaaaaaattttggatgaacACTTAA
TACCAATTTACTTAAAACGTATGGAAATCACACAAGATGAAAGATTGAAA
TATGCACATATTGAAAATGTCTTACATCCTAACCTAGCAAAGAAtcccaa
atttaaaaatttttctatgGTAACTTTAGACGAGACTGGTAAAGTCGTTG
GTCTCGGATTAAGCTACATGGTAACTAAGCAAGACTTTCAAGAGACTTTT
ATTGACCTTAATCTTCGGATCGTGAATGACTCAAGCTACAAAGAAAGTAT
CCGAAAATATTGCCAACACAGATATGCAGTTTGTTATCCACTTGCAAGAT
TTTTTGACGAATACAATGTTGATCAGATGGTTTATACAGAAGATGCCGTT
GTCTTACCTCAATATAGAGGTCGAGGAATAAATAATAACATGTATAAATT
AATGATGGCGGAGTTTGGTCACAAGCATGCTTTCTTTGCCGAAGAGATGA
TGCCTGTACAAAATATTGTGACGTCAGGAGGACTCAAACATGAGTTAGAT
GTCATAGGAACCTGGGACTCAGATGGATGGTTATGTATTGACCGACAATT
ATCTTATGATGGTTATCTTTGCCCGTTATTTTTTAAACCACTTACACATG
TACATAAATCTAAATTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072008-exon-scaffold_67-1491911889:4256..6000 | TCONS_00072008-exon-scaffold_67-1491911889:4256..6000 | Clytia hemisphaerica | exon |
| TCONS_00072008-exon-scaffold_67-1510915933:4256..6000 | TCONS_00072008-exon-scaffold_67-1510915933:4256..6000 | Clytia hemisphaerica | exon |
| TCONS_00072008-exon-scaffold_67-1575043694:4256..6000 | TCONS_00072008-exon-scaffold_67-1575043694:4256..6000 | Clytia hemisphaerica | exon |
| TCONS_00072008-exon-scaffold_67-1491911889:6106..6392 | TCONS_00072008-exon-scaffold_67-1491911889:6106..6392 | Clytia hemisphaerica | exon |
| TCONS_00072008-exon-scaffold_67-1510915933:6106..6392 | TCONS_00072008-exon-scaffold_67-1510915933:6106..6392 | Clytia hemisphaerica | exon |
| TCONS_00072008-exon-scaffold_67-1575043694:6106..6392 | TCONS_00072008-exon-scaffold_67-1575043694:6106..6392 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_67 | supercontig | scaffold_67:4256..6392 + |
Blast
The following BLAST results are available for this feature:
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