TCONS_00072007 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072007
Unique NameTCONS_00072007
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length523

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072007 ID=TCONS_00072007|Name=TCONS_00072007|organism=Clytia hemisphaerica|type=transcript|length=523bp
TGGAGATGATGAATTTGAGACTGACACCAACTTAGAGAAAGTAAAGTGGC
AGACGATCAAAAAGAAAGGTGTGTGTCAAAATAATTTCGAGGTTAAAATG
GGTAATGATTAATCTTGCTTAGTTGCTTAGCTGCTCAGGCCCCTTGCTCC
ACATGACGGTAGTTTTCTAAGCAAGTCTATCCATTGCAACGTTCTGGAGC
TGATCCATCGTGGATCCAGTATCGATTGGAATCTTTTCACATTTTTGGAG
GTCTCCAACGTGCTCTTAGTCGCTTGAAGACTTCTTTGTATGCAATGTTT
ATTGAGTTGACAGAATCTCTACAAATCACAGACCGTACCATAAAGGCAGC
CATTTTCTAATGTTGTCTATGATGATTATTGATTTGACACCAAGTCGCTA
TTTGATAATACTATTACGAGAAAAAGAGCTCTAAAACGTCACATTTCAAA
GACGTAAAGTATTTGTTAATTAAATATTATGTCCGGGtctcaatgggctt
ttccagaaatagtccgcaccccc
Run BLAST on NCBI

transcript from alignment at scaffold_66:187829..188351

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072007 ID=TCONS_00072007|Name=TCONS_00072007|organism=Clytia hemisphaerica|type=transcript|length=523bp|location=Sequence derived from alignment at scaffold_66:187829..188351 (Clytia hemisphaerica)
gggggtgcggactatttctggaaaagcccattgagaCCCGGACATAATAT
TTAATTAACAAATACTTTACGTCTTTGAAATGTGACGTTTTAGAGCTCTT
TTTCTCGTAATAGTATTATCAAATAGCGACTTGGTGTCAAATCAATAATC
ATCATAGACAACATTAGAAAATGGCTGCCTTTATGGTACGGTCTGTGATT
TGTAGAGATTCTGTCAACTCAATAAACATTGCATACAAAGAAGTCTTCAA
GCGACTAAGAGCACGTTGGAGACCTCCAAAAATGTGAAAAGATTCCAATC
GATACTGGATCCACGATGGATCAGCTCCAGAACGTTGCAATGGATAGACT
TGCTTAGAAAACTACCGTCATGTGGAGCAAGGGGCCTGAGCAGCTAAGCA
ACTAAGCAAGATTAATCATTACCCATTTTAACCTCGAAATTATTTTGACA
CACACCTTTCTTTTTGATCGTCTGCCACTTTACTTTCTCTAAGTTGGTGT
CAGTCTCAAATTCATCATCTCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044707XLOC_044707Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072007-exon-scaffold_66-1491911889:187829..188351TCONS_00072007-exon-scaffold_66-1491911889:187829..188351Clytia hemisphaericaexon
TCONS_00072007-exon-scaffold_66-1510915933:187829..188351TCONS_00072007-exon-scaffold_66-1510915933:187829..188351Clytia hemisphaericaexon
TCONS_00072007-exon-scaffold_66-1575043694:187829..188351TCONS_00072007-exon-scaffold_66-1575043694:187829..188351Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_66supercontigscaffold_66:187829..188351 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.60782	1.15149	0.255858	0.593678	0	0.120404	0.290524	0	0	0.23587	0.457882	0.300993	0.300575	0.6243	0	0.0688508	0.0848185	0	0	0.125683	0.327725	0.159853	0.518192	0.353334	0.121309	0.541325	0	0	0	0.127769
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072007 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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