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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072005 ID=TCONS_00072005|Name=TCONS_00072005|organism=Clytia hemisphaerica|type=transcript|length=5067bp CTGttgcaaaaagaacgaaattTTGTGGCTTACTCAACTTAAATATATTA AAGCATAAAGTGTGAGTAAAATATGTGGCTGACAAAAAAGCCACAAAAAA GTACATTTAACAACGCAAAAGTATGCACATTTAaccctttttgaaaattc agcctTTCTTCTTTCAAGTCTAGAAGGTCCCATTCAGAGATGGGATGTGA GGGTGCACGCCTGCACcattgggggtccttcaaagttcctcaaagtatcg tcaaaaaaaaactagaattttTTAACTGCAGCCACAATTTTGACTCaaat aacaaattattttttctaatcATATCTCCACGTTGAGGTCTATTACCCTG TGAAATCTCTATGGCTGACTCAAAAAATATGAAGAGTTAttccaaaaagt tgattttgagcattttttacaatgtcacactattttttaTTAGCATCAAC AATACACCTCCAACCTGTCGATTCTATATGAAAGGAAAATGTAAGCATGA TATTTGTGGTAAAAACTGCCAGTACACCCATCCTAAAGCCTGTCCAAAAC TCATGAAAGAAGGAAACAAGGGTCCAAGAGGATGTAATGCTGTAACTAAC TGTGCACAATTTCACCCCAGAATGTCCTCTTCCTCAATTAAAAGTGGTAC ATGCTTCAATATCCACTGCACTTTTGCACACATCAAAGGGACCAGATCCA TGTTAAAGAAATCAGATCTTCCAACAAAGAACCACAGAGAAACTAACGAT TCATtggattttctcaaaatactttCACCTGCAAACGATCTCATTCATCA ACGAAAGTCTCAAACCACCACCACAAACTTACCCTACTCAAGAAGTGTCC AAGCTGGTAAATCAACAACGATACAAAACCCAAGCCACAATTTCACCACC ACTTCACTTGTGGAAATTTTGAAGTCAGAGAATCACATTTTTCTAGGACT GACAGAAACATGGCTATCCAAAGGTCATAATGAGGTGGAGCTAGAAATTG ACGGATATAAGCTATTTCGAAAAGACAGAAATAGAAAGAAATCTAGATAT GGCAGATACAGGGGTGGAGTGGCTTTCTATTTACAGGATGATATTGCTCC TCTTCTCGAACCACTATTGGAATTCTCCAATGGGGTAAACGAAGCTCTCC TTCTATACTCCGAGCAACTTAATGTTATTCTTTGAATACTTTACAGACAA CCGACCAACAAAATTCACAAATCAGATGGTCCTGAGTTCATTCAAATGCT TGCTTCAATAACTTCAAAGATTGATACCATTAGCGACTGTACCCCAGACA ATTATATTTTGTGGAGACTTCAATATTCCACACATATTGTCATTGATCAA CGATACATACACACAAACAAAAAGCTGTGACAATCAGCTTATatatttta acagattttatgaTGCACCTAAACTTAAATCAGACAATACATAAACCAAC ACTATATAAAGACGGAAATATATTAGACTTTTTACTAACAAACAATCCAG ATATGGTTTTCGACTACCAAGTCACTCCTGCCTTTCATTCAGATCATCAC ATGGTCCAAGTTGCAACCCATATGACTTTTGACTTGTAAAAATTTTACCA AGAAAACCTCACACAACAAATTTGACAATTTTACAATATTCACAGTCACA AAATTAATtgggaaaatattaaaaaagatttacaaaatattgaCTGGCAC TGACTGGCATGCTATTTTAAACCCCATTTCAGACGAACAATATAATGCTT TTCTTGATAAATGCTTAAAAACGTTATCACTGAAAATCAAgtcaaagaaa tcaagaaaaaccgtAATACCCAGAGATAGAAGAGTGCTGATGCGAAAACG CCTAAAGCTTAAGAAAAGGAACCCAACTCCAAAGATTCACCGAAAACTTA TCAATATTGAACTTAAACTTCAAGAATCATAATGAAAGAAAGAACCAAGA AACAAATGCTACttcgaaaataaaatccaatccaaaatatttttattcgt aCGCTAAAcgcttttcaaaacacaaaccgAAGGTTGGACCATTGAAGGAT CCAAAAACCAATCAACTGACAAATGACAGTCTAAAAATGGCAAACATTCT ACAAGATCAATCAATATACCTCTGTTTTTATGGAACCACTACCCAACTAT AACTTGCCAGAAATCACCGAAAATCAACCAAATCTAAGTGATATCGACTT CTCAGAACAAAATATTATAGAGGAGATCGACACTTTATCCTCCAATGCTG CTGCAGGACCAGACGGCTTCCCtgcaattttcttaaaacaagtcAAGTCA CAGATTGCAGCCCCTCTCTCTCTAATCTGGAGAAATATACTTGACAAAGG CTANGGCTTCCCtgcaattttcttaaaacaagtcAAGTAACATATTGCAG CCCCTCTCTTTCTAATCTGGAAAAATATACTCGACAAAGGCTACACAcct caacttttgaaaaccagTTTCATCACACCCACCTTTAAAAAAGGCAACCA AGGCCTACCTGAAAACTATCGACCTGTAGCATTAACTTTGCATGTAACTA AGATCTTCGAGAAGATTGTCAGAAAACGGCTACAAAATCACCTAGAAGAA AGCGACCTCTTTAACGATAATCAACATGGATTCAGGTCTGGAAGATCATG TCTTAGCCCCTTAGCCAACTTCTTTCCGGACAGAACGACTCATCCATCAT ATTGAAAAAGGACGTAACGTTAACGTTATTTACCTTGACTTCAGCAAGGC ATTTGACCGTGTAGATCATACAATCTTACTCCATAAAATAGAGAGAAATG GTATAACTGGCAAATTACTGCAATGGATCAGATCCTTCCTTACCAGTAGG AACCAACAAGTATCTGTTGACTACATCCTCTCCAAAAAAGCAAAAGTCAT TTCTGGCGTCCCCCAAGGATCAGTTCTTTGTCCACTTCTCTTCCTGATAA TGATCCAAGATATTGACACTAACATCCTACATTCATTTCTATCTTCATTT GCCGAAGATACACGTTTAATCTGGTTTAATGAAGGAGATCTCTAATAACA CTGATGTTCGATTTCTACAAAACAACCTTGATATGGTGTATCAATGGaca tcattttttaaacaacatGCAGCTCAATGGCTTGAAGTTTGAACATCTTA AATAtacagaaaaaatgaagaactaaAAGAACACTCAAGTTACCTCTTAG TTAGACACTGGCTCTCCTATCGAAACCAAGATGGACGTGAAGGATTAGGA GTCACTCTGGATGTGAACATGACATATATACAGCAAACACATCACAAACC AGATCAAGAAAGTCAAAAGTATCATTTGCTTGGATCCATCTAACGCTCAA AACAAGAGATTGTCAAGTAATGCTAACTCTTTGGAAGTCACTGGTACTAC CACACATTGACTATTACTCCCAGCTGTGGTCACCTTCAAAAAGATATCTG ATCCAACAACTGGaatcatttcaaaaatcttacctgAATGGAATCCCTAC ACTTCAACATCTCAACTTATGGGAGAAGCTCAAAGAACTTAAACTATTAT ACAGCCTGGAGCGGCACAGAGAAAGATACAGGATTACCTACACCTGGAGC ATCCTAGAACAGCTTgtaccaaattttaactatgctGAAAACAAAGGTGG CATCTTCATTTACAATAACCAGAGACTGGGTAGAAAATGTTATCTAAAAG AGGTGAATATAAATAAGGCAAAAAAACATATGGAGAGACTCCCTGTCAGA AGAAGGTCCCAGACTATTTAATGCCCTCCCACAatagatagacctttttt taaagaggcagtcatgttgaataattatgtaatccagcataaaaacaatg atacagtatacataatttttcaaatatgcatgatacagtaattatgcatg gctgtatcattgtttttatgctggagtacataattattcaacatggctgc ctctttaaaaaaaggtctatccatctgtaacctcaaaaactgctcaaaaa ctgattttaaacatcaattggaccattttctcaattcactACCGTAGGAT tgtctaatatcgacatacgtcttctaatctcgacatagctgtaggctggt cttcgaaataaaaaatcaaacataaacaaatacataccaaagttatcaat caatcactaaattgtactctctatctatcacgtcacagattgttactaca atatgagaaatgtgaactgttattacttatatttgaaaagaacactttaa cgatgtagtaatcactaaaaaactaattagcatgctttcaacgaagatgc ccaaatcacaacaacattttgcacgcgaggaattttttagtagacctttt tatcgtgaaccgaaaataattaaaagaacccggtttccttatgttatgaa tttgaaaagggaccaGGTGTAAGTgcggcgcctagaagtttaacgcggcc tcctagcgcctagagcgtgtgcttgcaataaataataaggaaatggaaac caggtcAACTAAGcgcgcaaattttttttatcacgtgacttgataaaact tgaaagttgtaaaattttaatgatggacacaagAAAGTTAcaaggaagtt tgcatgcgtttcgtgtgttgtgtaaaactgcttataatttggctgttttt tttaattgaaaggattgcaatgtttactgaacagtgaggctggaacttcg atttttgaggattacgattttaccagttttttagcaatttttgtctcgct agcccaaatctcgcaacctctttaccttgaggaagatcgaaattagagtt tttcagcgttcagaaaaaaacgcatagcagaaattttctcatcttcacag gatcgattctcaacaacaaaatacatcatttggtctttgggtttgtttct gacgttttttcttcaaagaatatcgatcactttccttttccccttgagcg cgcgagaaaaaaatgactggctcgttttcgtgcgggcgaataaagacgag gcggcaatcttgcactgagggtgctacttagtttccgccctattttgcgc ccacgatagaatggtcc Run BLAST on NCBI protein sequence of TCONS_00072005-protein >TCONS_00072005-protein ID=TCONS_00072005-protein|Name=TCONS_00072005-protein|organism=Clytia hemisphaerica|type=polypeptide|length=274bp
MADSKNMKSYSKKLILSIFYNVTLFFISINNTPPTCRFYMKGKCKHDICG KNCQYTHPKACPKLMKEGNKGPRGCNAVTNCAQFHPRMSSSSIKSGTCFN IHCTFAHIKGTRSMLKKSDLPTKNHRETNDSLDFLKILSPANDLIHQRKS QTTTTNLPYSRSVQAGKSTTIQNPSHNFTTTSLVEILKSENHIFLGLTET WLSKGHNEVELEIDGYKLFRKDRNRKKSRYGRYRGGVAFYLQDDIAPLLE PLLEFSNGVNEALLLYSEQLNVIL Run BLAST on NCBI transcript from alignment at scaffold_66:128631..133697 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072005 ID=TCONS_00072005|Name=TCONS_00072005|organism=Clytia hemisphaerica|type=transcript|length=5067bp|location=Sequence derived from alignment at scaffold_66:128631..133697 (Clytia hemisphaerica) ggaccattctatcgtgggcgcaaaatagggcggaaactaagtagcaccct
cagtgcaagattgccgcctcgtctttattcgcccgcacgaaaacgagcca
gtcatttttttctcgcgcgctcaaggggaaaaggaaagtgatcgatattc
tttgaagaaaaaacgtcagaaacaaacccaaagaccaaatgatgtatttt
gttgttgagaatcgatcctgtgaagatgagaaaatttctgctatgcgttt
ttttctgaacgctgaaaaactctaatttcgatcttcctcaaggtaaagag
gttgcgagatttgggctagcgagacaaaaattgctaaaaaactggtaaaa
tcgtaatcctcaaaaatcgaagttccagcctcactgttcagtaaacattg
caatcctttcaattaaaaaaaacagccaaattataagcagttttacacaa
cacacgaaacgcatgcaaacttccttgTAACTTTcttgtgtccatcatta
aaattttacaactttcaagttttatcaagtcacgtgataaaaaaaatttg
cgcgCTTAGTTgacctggtttccatttccttattatttattgcaagcaca
cgctctaggcgctaggaggccgcgttaaacttctaggcgccgcACTTACA
CCtggtcccttttcaaattcataacataaggaaaccgggttcttttaatt
attttcggttcacgataaaaaggtctactaaaaaattcctcgcgtgcaaa
atgttgttgtgatttgggcatcttcgttgaaagcatgctaattagttttt
tagtgattactacatcgttaaagtgttcttttcaaatataagtaataaca
gttcacatttctcatattgtagtaacaatctgtgacgtgatagatagaga
gtacaatttagtgattgattgataactttggtatgtatttgtttatgttt
gattttttatttcgaagaccagcctacagctatgtcgagattagaagacg
tatgtcgatattagacaATCCTACGGTagtgaattgagaaaatggtccaa
ttgatgtttaaaatcagtttttgagcagtttttgaggttacagatggata
gacctttttttaaagaggcagccatgttgaataattatgtactccagcat
aaaaacaatgatacagccatgcataattactgtatcatgcatatttgaaa
aattatgtatactgtatcattgtttttatgctggattacataattattca
acatgactgcctctttaaaaaaaggtctatctatTGTGGGAGGGCATTAA
ATAGTCTGGGACCTTCTTCTGACAGGGAGTCTCTCCATATGTTTTTTTGC
CTTATTTATATTCACCTCTTTTAGATAACATTTTCTACCCAGTCTCTGGT
TATTGTAAATGAAGATGCCACCTTTGTTTTCagcatagttaaaatttggt
acAAGCTGTTCTAGGATGCTCCAGGTGTAGGTAATCCTGTATCTTTCTCT
GTGCCGCTCCAGGCTGTATAATAGTTTAAGTTCTTTGAGCTTCTCCCATA
AGTTGAGATGTTGAAGTGTAGGGATTCCATTcaggtaagatttttgaaat
gattCCAGTTGTTGGATCAGATATCTTTTTGAAGGTGACCACAGCTGGGA
GTAATAGTCAATGTGTGGTAGTACCAGTGACTTCCAAAGAGTTAGCATTA
CTTGACAATCTCTTGTTTTGAGCGTTAGATGGATCCAAGCAAATGATACT
TTTGACTTTCTTGATCTGGTTTGTGATGTGTTTGCTGTATATATGTCATG
TTCACATCCAGAGTGACTCCTAATCCTTCACGTCCATCTTGGTTTCGATA
GGAGAGCCAGTGTCTAACTAAGAGGTAACTTGAGTGTTCTTttagttctt
cattttttctgtaTATTTAAGATGTTCAAACTTCAAGCCATTGAGCTGCa
tgttgtttaaaaaatgatgtCCATTGATACACCATATCAAGGTTGTTTTG
TAGAAATCGAACATCAGTGTTATTAGAGATCTCCTTCATTAAACCAGATT
AAACGTGTATCTTCGGCAAATGAAGATAGAAATGAATGTAGGATGTTAGT
GTCAATATCTTGGATCATTATCAGGAAGAGAAGTGGACAAAGAACTGATC
CTTGGGGGACGCCAGAAATGACTTTTGCTTTTTTGGAGAGGATGTAGTCA
ACAGATACTTGTTGGTTCCTACTGGTAAGGAAGGATCTGATCCATTGCAG
TAATTTGCCAGTTATACCATTTCTCTCTATTTTATGGAGTAAGATTGTAT
GATCTACACGGTCAAATGCCTTGCTGAAGTCAAGGTAAATAACGTTAACG
TTACGTCCTTTTTCAATATGATGGATGAGTCGTTCTGTCCGGAAAGAAGT
TGGCTAAGGGGCTAAGACATGATCTTCCAGACCTGAATCCATGTTGATTA
TCGTTAAAGAGGTCGCTTTCTTCTAGGTGATTTTGTAGCCGTTTTCTGAC
AATCTTCTCGAAGATCTTAGTTACATGCAAAGTTAATGCTACAGGTCGAT
AGTTTTCAGGTAGGCCTTGGTTGCCTTTTTTAAAGGTGGGTGTGATGAAA
ctggttttcaaaagttgaggTGTGTAGCCTTTGTCGAGTATATTTTTCCA
GATTAGAAAGAGAGGGGCTGCAATATGTTACTTgacttgttttaagaaaa
ttgcaGGGAAGCCNTAGCCTTTGTCAAGTATATTTCTCCAGATTAGAGAG
AGAGGGGCTGCAATCTGTGACTTgacttgttttaagaaaattgcaGGGAA
GCCGTCTGGTCCTGCAGCAGCATTGGAGGATAAAGTGTCGATCTCCTCTA
TAATATTTTGTTCTGAGAAGTCGATATCACTTAGATTTGGTTGATTTTCG
GTGATTTCTGGCAAGTTATAGTTGGGTAGTGGTTCCATAAAAACAGAGGT
ATATTGATTGATCTTGTAGAATGTTTGCCATTTTTAGACTGTCATTTGTC
AGTTGATTGGTTTTTGGATCCTTCAATGGTCCAACCTTcggtttgtgttt
tgaaaagcgTTTAGCGtacgaataaaaatattttggattggattttattt
tcgaaGTAGCATTTGTTTCTTGGTTCTTTCTTTCATTATGATTCTTGAAG
TTTAAGTTCAATATTGATAAGTTTTCGGTGAATCTTTGGAGTTGGGTTCC
TTTTCTTAAGCTTTAGGCGTTTTCGCATCAGCACTCTTCTATCTCTGGGT
ATTacggtttttcttgatttctttgacTTGATTTTCAGTGATAACGTTTT
TAAGCATTTATCAAGAAAAGCATTATATTGTTCGTCTGAAATGGGGTTTA
AAATAGCATGCCAGTCAGTGCCAGtcaatattttgtaaatcttttttaat
attttcccaATTAATTTTGTGACTGTGAATATTGTAAAATTGTCAAATTT
GTTGTGTGAGGTTTTCTTGGTAAAATTTTTACAAGTCAAAAGTCATATGG
GTTGCAACTTGGACCATGTGATGATCTGAATGAAAGGCAGGAGTGACTTG
GTAGTCGAAAACCATATCTGGATTGTTTGTTAGTAAAAAGTCTAATATAT
TTCCGTCTTTATATAGTGTTGGTTTATGTATTGTCTGATTTAAGTTTAGG
TGCAtcataaaatctgttaaaatatATAAGCTGATTGTCACAGCTTTTTG
TTTGTGTGTATGTATCGTTGATCAATGACAATATGTGTGGAATATTGAAG
TCTCCACAAAATATAATTGTCTGGGGTACAGTCGCTAATGGTATCAATCT
TTGAAGTTATTGAAGCAAGCATTTGAATGAACTCAGGACCATCTGATTTG
TGAATTTTGTTGGTCGGTTGTCTGTAAAGTATTCAAAGAATAACATTAAG
TTGCTCGGAGTATAGAAGGAGAGCTTCGTTTACCCCATTGGAGAATTCCA
ATAGTGGTTCGAGAAGAGGAGCAATATCATCCTGTAAATAGAAAGCCACT
CCACCCCTGTATCTGCCATATCTAGATTTCTTTCTATTTCTGTCTTTTCG
AAATAGCTTATATCCGTCAATTTCTAGCTCCACCTCATTATGACCTTTGG
ATAGCCATGTTTCTGTCAGTCCTAGAAAAATGTGATTCTCTGACTTCAAA
ATTTCCACAAGTGAAGTGGTGGTGAAATTGTGGCTTGGGTTTTGTATCGT
TGTTGATTTACCAGCTTGGACACTTCTTGAGTAGGGTAAGTTTGTGGTGG
TGGTTTGAGACTTTCGTTGATGAATGAGATCGTTTGCAGGTGaaagtatt
ttgagaaaatccaATGAATCGTTAGTTTCTCTGTGGTTCTTTGTTGGAAG
ATCTGATTTCTTTAACATGGATCTGGTCCCTTTGATGTGTGCAAAAGTGC
AGTGGATATTGAAGCATGTACCACTTTTAATTGAGGAAGAGGACATTCTG
GGGTGAAATTGTGCACAGTTAGTTACAGCATTACATCCTCTTGGACCCTT
GTTTCCTTCTTTCATGAGTTTTGGACAGGCTTTAGGATGGGTGTACTGGC
AGTTTTTACCACAAATATCATGCTTACATTTTCCTTTCATATAGAATCGA
CAGGTTGGAGGTGTATTGTTGATGCTAAtaaaaaatagtgtgacattgta
aaaaatgctcaaaatcaactttttggaaTAACTCTTCATATTTTTTGAGT
CAGCCATAGAGATTTCACAGGGTAATAGACCTCAACGTGGAGATATgatt
agaaaaaataatttgttatttGAGTCAAAATTGTGGCTGCAGTTAAaaaa
ttctagtttttttttgacgatactttgaggaactttgaaggacccccaat
gGTGCAGGCGTGCACCCTCACATCCCATCTCTGAATGGGACCTTCTAGAC
TTGAAAGAAGAAaggctgaattttcaaaaagggtTAAATGTGCATACTTT
TGCGTTGTTAAATGTACTTTTTTGTGGCTTTTTTGTCAGCCACATATTTT
ACTCACACTTTATGCTTTAATATATTTAAGTTGAGTAAGCCACAAaattt
cgttctttttgcaaCAG Coding sequence (CDS) from alignment at scaffold_66:128631..133697 >TCONS_00072005 ID=TCONS_00072005|Name=TCONS_00072005|organism=Clytia hemisphaerica|type=CDS|length=825bp|location=Sequence derived from alignment at scaffold_66:128631..133697 (Clytia hemisphaerica) TCAAAGAATAACATTAAGTTGCTCGGAGTATAGAAGGAGAGCTTCGTTTA CCCCATTGGAGAATTCCAATAGTGGTTCGAGAAGAGGAGCAATATCATCC TGTAAATAGAAAGCCACTCCACCCCTGTATCTGCCATATCTAGATTTCTT TCTATTTCTGTCTTTTCGAAATAGCTTATATCCGTCAATTTCTAGCTCCA CCTCATTATGACCTTTGGATAGCCATGTTTCTGTCAGTCCTAGAAAAATG TGATTCTCTGACTTCAAAATTTCCACAAGTGAAGTGGTGGTGAAATTGTG GCTTGGGTTTTGTATCGTTGTTGATTTACCAGCTTGGACACTTCTTGAGT AGGGTAAGTTTGTGGTGGTGGTTTGAGACTTTCGTTGATGAATGAGATCG TTTGCAGGTGaaagtattttgagaaaatccaATGAATCGTTAGTTTCTCT GTGGTTCTTTGTTGGAAGATCTGATTTCTTTAACATGGATCTGGTCCCTT TGATGTGTGCAAAAGTGCAGTGGATATTGAAGCATGTACCACTTTTAATT GAGGAAGAGGACATTCTGGGGTGAAATTGTGCACAGTTAGTTACAGCATT ACATCCTCTTGGACCCTTGTTTCCTTCTTTCATGAGTTTTGGACAGGCTT TAGGATGGGTGTACTGGCAGTTTTTACCACAAATATCATGCTTACATTTT CCTTTCATATAGAATCGACAGGTTGGAGGTGTATTGTTGATGCTAAtaaa aaatagtgtgacattgtaaaaaatgctcaaaatcaactttttggaaTAAC TCTTCATATTTTTTGAGTCAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00072005-exon-scaffold_66-1491911889:128631..133697 | TCONS_00072005-exon-scaffold_66-1491911889:128631..133697 | Clytia hemisphaerica | exon |
TCONS_00072005-exon-scaffold_66-1510915933:128631..133697 | TCONS_00072005-exon-scaffold_66-1510915933:128631..133697 | Clytia hemisphaerica | exon |
TCONS_00072005-exon-scaffold_66-1575043694:128631..133697 | TCONS_00072005-exon-scaffold_66-1575043694:128631..133697 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_66 | supercontig | scaffold_66:128631..133697 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR000571 | Znf_CCCH |
Vocabulary: Molecular Function
Term | Definition |
GO:0046872 | metal ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0046872 |
metal ion binding |
Blast
The following BLAST results are available for this feature:
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