Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071993 ID=TCONS_00071993|Name=TCONS_00071993|organism=Clytia hemisphaerica|type=transcript|length=1894bpRun BLAST on NCBI protein sequence of TCONS_00071993-protein >TCONS_00071993-protein ID=TCONS_00071993-protein|Name=TCONS_00071993-protein|organism=Clytia hemisphaerica|type=polypeptide|length=439bp DLVKTNYKNMGNIYTVGPNEALVVSGGCFGQRAKRTIVGGWAWAWSCVSDRun BLAST on NCBI transcript from alignment at scaffold_66:105992..114175- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071993 ID=TCONS_00071993|Name=TCONS_00071993|organism=Clytia hemisphaerica|type=transcript|length=8184bp|location=Sequence derived from alignment at scaffold_66:105992..114175- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_66:105992..114175- >TCONS_00071993 ID=TCONS_00071993|Name=TCONS_00071993|organism=Clytia hemisphaerica|type=CDS|length=13200bp|location=Sequence derived from alignment at scaffold_66:105992..114175- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00071993 vs. Swiss-Prot (Human)
Match: FLOT2 (Flotillin-2 OS=Homo sapiens GN=FLOT2 PE=1 SV=2) HSP 1 Score: 455.292 bits (1170), Expect = 3.303e-154 Identity = 286/418 (68.42%), Postives = 351/418 (83.97%), Query Frame = 2 Query: 29 MGNIYTVGPNEALVVSGGCFGQRAKRTIVGGWAWAWSCVSDVQSISLEIMTLNPKCESXXXXXXXXXXXXXXXXXXXIKEDELLKTACEQFLGKNPEEIEGILLQTLEGHLRAILGTLTVEEIYKDRDTFAGLVREVASPDVGRMGIEILSFTIKDIEDKVNYLDSLGKTQTAVVRREADIGVAEANRDAGIKEAECDREKQDSRFKADTQIANSSRAYQMEKAAFDQEVNTKTXXXXXXXXXXXXXXXXGXXXXXXXXXXXXXXXXXXVQEKDIEHREKELQATVRLPAEADAHKVQVLAEAAKTKKVLAAQADAEKIRMXXXXXXXXXXXXXXXXXXRMRQKAAAYKQYGDAALMSLILEAMPKIAAEVAAPLEKTQEIVIISDDKNGSNVSSEVTKLLGSLPPQIQALTGVDLSK 1282 MGN +TVGPNEALVVSGGC G K+ + GGWAWAW C+SD Q ISLEIMTL P+CE VETA+GVA+TVTGVAQVK++ E ELL ACEQFLGKN ++I+ ++LQTLEGHLR+ILGTLTVE+IY+DRD FA LVREVA+PDVGRMGIEILSFTIKD+ DKV+YL SLGKTQTAVV+R+ADIGVAEA RDAGI+EAEC +E D +F ADT+IA+S RA++++K+AF +EVN KTAEA+LAYELQ A+E++ IR EEIEIEV++R+K I V+ ++I +KEL ATVR PAEA+AH++Q +AE K K+VL AQA+AEKIR IG AEAA IEA+GKAEAERM+ KA AY++YGDAA M+L+LEA+P+IAA++AAPL K EIV++S D S V+SEV +LL LP + ALTGVDLSK Sbjct: 1 MGNCHTVGPNEALVVSGGCCGSDYKQYVFGGWAWAWWCISDTQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTAVVQRDADIGVAEAERDAGIREAECKKEMLDVKFMADTKIADSKRAFELQKSAFSEEVNIKTAEAQLAYELQGAREQQKIRQEEIEIEVVQRKKQIAVEAQEILRTDKELIATVRRPAEAEAHRIQQIAEGEKVKQVLLAQAEAEKIRKIGEAEAAVIEAMGKAEAERMKLKAEAYQKYGDAAKMALVLEALPQIAAKIAAPLTKVDEIVVLSGD--NSKVTSEVNRLLAELPASVHALTGVDLSK 416 The following BLAST results are available for this feature:
BLAST of TCONS_00071993 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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