|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071992 ID=TCONS_00071992|Name=TCONS_00071992|organism=Clytia hemisphaerica|type=transcript|length=2080bp
CAAGGAATGAAGCTAAAATCCATAGTTCACATACAAAAAAATGTGGACAG
TCGTTTCTATCAGTATACAGAGTGGTGGCAAAACCATTATTTCGTTGAAA
TTGATATTGAAATTCCATTGGATGAACAGGAGAATAAAGCTTTCCCATTG
GTCGGTAACAAAAACAACGTGCTCCGATTGGCTCAATATGTGCATGTGAC
ACCTTCTAATGATGCATGCTTCATGGCAGATTGGGAATGGCGGGAAAATG
TTGAAGTTGAGATTTTGACACCCATTAGGAATCAAATACAATGGTTAGAA
TATTTACTGGTAATGTTAGAAAATGTGGTCAAAAAGACACATGAAAATAA
GATTACGTTAAACGTCATTGATTACAAAAGTGATGACGGATACGTCTTGT
CGTTACTAAACAAATTTGACGTCAAGTATAAATACATTCTTGCTGATGAC
GTCACTTTCAACAAAGTCAAAGCGCTGAACATTGGATTATCTCACATTGG
GAACAACAATAGCATTGTGTTTGTAATGGACCTACATCTACAATTGCCGT
TGAATATCTTTGACCGTATTCGAAAGTTTACCATCCAAGATAAGACAACA
TTTTGTCCAACATTGTTGAAATTCCAATGCGGTGAACACGAACAGTACAC
AACATTGCACGAAACACTTTGGATAGATGCTGGTATGGCATGATGGCTAT
GTataaatctgattggttgaaagttggTGgcTTTAACGAGAAGAGGTTTG
GAAACCAGTGGGGTGGAGAAGACTGGGAACTAATTGATCGTATCGTAGCA
ACAGGATTATATGTATTTCATGATCGAATGCCACGtttttatcatattta
tcaTAACAATAAAAAGACATGGGATGGGAAACATGAATGAAGAGAGTTTG
GATCCGCAGgtggcacaaaacgttgtttgaacgtAATTTGGACGTTGGAG
CAATGTTGTCAGACGTTCTGGAATACTTTGGTGCCAATTTGAGAACTTTA
AAAATGACTTTTACAGGAAACACCAATCAAGGGATAGAAGAGCCTGTTTA
TTTGGTGCCGGATGTGACACCAAAACGTTGTCTGAACGTAATTTGGATGT
TTGATGGACGTAAGAATGATATTGTCAGAAGTTATGGTATACTCTGGTAC
CAATTTGAGAATCATAAAAATGCCTTTTAGGAAAACACCAATCAaggaat
agacgatatcggcttcacataaaaactcagatttgaccctcgagaattcc
ccacaatgctttgtaaggaaaaaatttcaccgtgaacttttttccgcaca
aagcattgtggggaattctcgggggtcaaatttgagttttcacgttaagc
caaTATCGTCTATTGAAGAGCCTCTTTTTTTTGGTGACACATGTGACACC
AAAACGTTGTCTGAACGTAATTTGGATGTTTAATGGATGTTAGGATGATA
TTGTCAGAAGTTTTGGTATACCTTGGTAGCGACTTGAGAGTTATAGAAAT
GACTTCAGAAAGTGATTTATATAAAATATCTGTAATATTTGAGACTTGGA
TTACAGCAAAGAAGTCTTCATTTTAATAGTTCAAAAATGAATAAGATCAC
CAAAAATTATGTCAATCCCATGATTTGTATTTTGTACTACTTTGTCACTA
Atttacaaagaaacaaaaaaacaaccttaatctttcaaaactgaaaaaat
aattaaaatgtaGTATGTACAGAATAGGAAcataaaaattattaatttgt
aaaatttgtgaCCAATAGTATGATGTAAGCAAAATCCAGTAGATTTTGTA
TGCCGGAAGCTGAATTCCTAATAAGTCAGGCCATTTTTATGCCCTTTTTT
ATGCAGTCCGAtcatcggacgctgcccctcctgaattcactaaaattttg
gtaaaaacagcttttttggtggaaaaacactagaaaaagtgccctttttg
accACCACCTGACGCTGCCCTGTCTTTCTAAAATCTTGCCTGTAAGTAAT
TAAGTCTaacgaccgcagtcggaggcgaccagAAGACTCCTCTGTTGATA
GCCacaagtttttataagaatatccaaagc Run BLAST on NCBI protein sequence of TCONS_00071992-protein >TCONS_00071992-protein ID=TCONS_00071992-protein|Name=TCONS_00071992-protein|organism=Clytia hemisphaerica|type=polypeptide|length=230bp
QGMKLKSIVHIQKNVDSRFYQYTEWWQNHYFVEIDIEIPLDEQENKAFPL
VGNKNNVLRLAQYVHVTPSNDACFMADWEWRENVEVEILTPIRNQIQWLE
YLLVMLENVVKKTHENKITLNVIDYKSDDGYVLSLLNKFDVKYKYILADD
VTFNKVKALNIGLSHIGNNNSIVFVMDLHLQLPLNIFDRIRKFTIQDKTT
FCPTLLKFQCGEHEQYTTLHETLWIDAGMA Run BLAST on NCBI transcript from alignment at scaffold_66:68117..72116- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071992 ID=TCONS_00071992|Name=TCONS_00071992|organism=Clytia hemisphaerica|type=transcript|length=4000bp|location=Sequence derived from alignment at scaffold_66:68117..72116- (Clytia hemisphaerica)
CAAGGAATGAAGCTAAAATCCATAGTTCACATACAAAAAAATGTGGACAG
TCGTTTCTATCAGTATACAGAGTGGTGGCAAAACCATTATTTCGTTGAAA
TTGATATTGAAATTCCATTGGATGAACAGGAGAATAAAGCTTTCCCATTG
GTCGGTAACAAAAACAACGTGCTCCGATTGGCTCAATATGTGCATGTGAC
ACCTTCTAATGATGCATGCTTCATGGCAGATTGGGAATGGCGGGAAAATG
TTGAAGTTGAGATTTTGACACCCATTAGGAATCAAATACAATGGTTAGAA
TATTTACTGGTAATGTTAGAAAATGTGGTCAAAAAGACACATGAAAATAA
GGTTGGGATTTCTTTTATTTTTACATCCTTTTTACTACATTTCCTTAATC
TAGGAAGAACGAGTCTTAACTTACAATATTTTTTAAGCTCTTCCATTGGT
CTTGCCAATTGAATAGACTTTTTAACCCCCGGGCGGCGTTGCATCATTCT
CGTACAGGATATCCAATACAAGTTGTTTGATTGACGGCGTAAACCGGCTG
AAATGTACCGAGTAACGGCTGAGTTTACCAGGAGCTAGAATTTGACGTCA
AGGTGAGAAAATCAATGTAATGACTTTCAGACATTTGTAGTAAATCCGTG
TCTGGAAACTTTAACCATGTATCCCACGATTTCAAGAGTTGATAGCACGT
TTTTTTATTCATGGGTGTCCGTCAAAGTAGCGTTTGCCAGGACGCCTATA
ACCCTGTGTTTAAAATCGACCTTCTCTTACCCTGAGAGTAATTTGACCTT
TCACTTTCACACGTACACTGAAGTTGAGCTCAGTGCTTTAGCACGTTACA
GTTTATGAACCTATTCTTAATTTAAACTTTCTAGATTACGTTAAACGTCA
TTGATTACAAAAGTGATGACGGATACGTCTTGTCGTTACTAAACAAATTT
GACGTCAAGTATAAATACATTCTTGCTGATGACGTCACTTTCAACAAAGT
CAAAGCGCTGAACATTGGATTATCTCACATTGGGAACAACAATAGCATTG
TGTTTGTAATGGACCTACATCTACAATTGCCGTTGAATATCTTTGACCGT
ATTCGAAAGGTGGGTTATCCTCCTACTTTTGAATGGGTCATTCCATTAAA
TTTCCATACATGGGGTGGACGAACCATTTGAAGTCGAAAAGGATTTCTTG
GAGATGCGTAGATACCCCCTGGATAATAAAAATATATTTGTGTACCTTAA
AGTGACGGTGGACGAACTAAAATCAGTCTTTTACCCCCTTGGAATTTTTA
AGGTAATTTTTTACCCCCTGGAAAAACGAAAAACACTTTTTTAGACCCCC
TGGAAATGTTCGTCCACCCCCCCCTGACTGGAATGGCCCAACACACCAAT
TTCTTTCAAAGAGTATACGCTTAAAATTGAAATTCTTACGCAAACTTTTC
TACGCTCGCTATTTAGTCTTTTAATTTTTGAACAATAACATTATTACTGC
GGATATAGCCAGAACACGAGAAATCGGTAAAGTTACTTGTATATCCAGTG
CATGATTGTTCCTCAATTTTTTGGATTCAACCTATAAGTTCAGGTGTCAC
AGACCCGCCGCTGAAAATATGGCCAAAATTTCATCCTCGGTGGGGAAAAA
CCCTGCAATTTCAGCCCAACTGGGAATTTGACTTTGAAATTCAATGTTAA
AATAAATTGCACTCAAAAACTTGTGGGGACAAGAACAAAATACGTTCAAT
CCTAGCCGTGAGACAGGGCTGTTATAGGCAGTGTTTAAACTAGTCATGTG
ACTTTGTTTAGGATTAAAAACTGACTTAAACTTGACCTAATTCTAAAAAG
ATTGAGAATTCTTCTACGGTTATACGTGGTCCATTCTTGTAAATCATAGA
CTAGTAACTATGTCGTTGTAATTCGCTGCAGCTTACGCTTTCAATGGGCT
CACTACGTTTGCTGAATACAACTCTTTCCCGCGGCAATTCTATTTTTCAT
AAGAACACTTTATAAGCACTATCTCCGCCTTTCTGTGACCAAGGAAAGGC
ATACGCTTGCTAGTCTATGTAAATTACTTCTCAAATTCTATTTAGTTTAC
CATCCAAGATAAGACAACATTTTGTCCAACATTGTTGAAATTCCAATGCG
GTGAACACGAACAGTACACAACATTGCACGAAACACTTTGGATAGATGCT
GGTATGGCATGATGGCTATGTATAAATCTGATTGGTTGAAAGTTGGTGGT
AAGTGGATTTGGATGTTCCATTGAATTAAAAAGGGGGTGGACAAACCTTT
TTAAGTCAAAAAGATTCATGAGGCTGATGAATTTAATGATTTGAGTTTCT
GTTTACGTTATGAAGATGAGAGCACATAGCAAAAATATTGTTTGCACTTT
TTGAAAAAAAATTTCAAAAGTTTTGCACCGACATCTTGCGTCAGCAAGAC
ATCAGTTAAGGAGTAAGGATGCCCCGAAACTAACCTATTTCCTTTAGAAT
TTTATGCTCTTTATTTCCAAAAGTAGTTACGAGAGTTCCGGGAACCTCTT
AGAGAGATAAAGCCCGGTAAAGTTGGGTCCCTGAGAGACTGAAAAGGTTA
ATATAAAAAGTAAAAATCTTGTTGTTTATTTTTTTTTTGTATTTTCAAGG
CTTTAACGAGAAGAGGTTTGGAAACCAGTGGGGTGGAGAAGACTGGGAAC
TAATTGATCGTATCGTAGCAACAGGATTATATGTATTTCATGATCGAATG
CCACGTTTTTATCATATTTATCATAACAATAAAAAGACATGGGATGGGAA
ACATGAATGAAGAGAGTTTGGATCCGCAGGTGGCACAAAACGTTGTTTGA
ACGTAATTTGGACGTTGGAGCAATGTTGTCAGACGTTCTGGAATACTTTG
GTGCCAATTTGAGAACTTTAAAAATGACTTTTACAGGAAACACCAATCAA
GGGATAGAAGAGCCTGTTTATTTGGTGCCGGATGTGACACCAAAACGTTG
TCTGAACGTAATTTGGATGTTTGATGGACGTAAGAATGATATTGTCAGAA
GTTATGGTATACTCTGGTACCAATTTGAGAATCATAAAAATGCCTTTTAG
GAAAACACCAATCAAGGAATAGACGATATCGGCTTCACATAAAAACTCAG
ATTTGACCCTCGAGAATTCCCCACAATGCTTTGTAAGGAAAAAATTTCAC
CGTGAACTTTTTTCCGCACAAAGCATTGTGGGGAATTCTCGGGGGTCAAA
TTTGAGTTTTCACGTTAAGCCAATATCGTCTATTGAAGAGCCTCTTTTTT
TTGGTGACACATGTGACACCAAAACGTTGTCTGAACGTAATTTGGATGTT
TAATGGATGTTAGGATGATATTGTCAGAAGTTTTGGTATACCTTGGTAGC
GACTTGAGAGTTATAGAAATGACTTCAGAAAGTGATTTATATAAAATATC
TGTAATATTTGAGACTTGGATTACAGCAAAGAAGTCTTCATTTTAATAGT
TCAAAAATGAATAAGATCACCAAAAATTATGTCAATCCCATGATTTGTAT
TTTGTACTACTTTGTCACTAATTTACAAAGAAACAAAAAAACAACCTTAA
TCTTTCAAAACTGAAAAAATAATTAAAATGTAGTATGTACAGAATAGGAA
CATAAAAATTATTAATTTGTAAAATTTGTGACCAATAGTATGATGTAAGC
AAAATCCAGTAGATTTTGTATGCCGGAAGCTGAATTCCTAATAAGTCAGG
CCATTTTTATGCCCTTTTTTATGCAGTCCGATCATCGGACGCTGCCCCTC
CTGAATTCACTAAAATTTTGGTAAAAACAGCTTTTTTGGTGGAAAAACAC
TAGAAAAAGTGCCCTTTTTGACCACCACCTGACGCTGCCCTGTCTTTCTA
AAATCTTGCCTGTAAGTAATTAAGTCTAACGACCGCAGTCGGAGGCGACC
AGAAGACTCCTCTGTTGATAGCCACAAGTTTTTATAAGAATATCCAAAGC
Coding sequence (CDS) from alignment at scaffold_66:68117..72116- >TCONS_00071992 ID=TCONS_00071992|Name=TCONS_00071992|organism=Clytia hemisphaerica|type=CDS|length=2079bp|location=Sequence derived from alignment at scaffold_66:68117..72116- (Clytia hemisphaerica)
TTTACCATCCAAGATAAGACAACATTTTGTCCAACATTGTTGAAATTCCA
ATGCGGTGAACACGAACAGTACACAACATTGCACGAAACACTTTGGATAG
ATGCTGGTATGGCATGAATTACGTTAAACGTCATTGATTACAAAAGTGAT
GACGGATACGTCTTGTCGTTACTAAACAAATTTGACGTCAAGTATAAATA
CATTCTTGCTGATGACGTCACTTTCAACAAAGTCAAAGCGCTGAACATTG
GATTATCTCACATTGGGAACAACAATAGCATTGTGTTTGTAATGGACCTA
CATCTACAATTGCCGTTGAATATCTTTGACCGTATTCGAAAGCAAGGAAT
GAAGCTAAAATCCATAGTTCACATACAAAAAAATGTGGACAGTCGTTTCT
ATCAGTATACAGAGTGGTGGCAAAACCATTATTTCGTTGAAATTGATATT
GAAATTCCATTGGATGAACAGGAGAATAAAGCTTTCCCATTGGTCGGTAA
CAAAAACAACGTGCTCCGATTGGCTCAATATGTGCATGTGACACCTTCTA
ATGATGCATGCTTCATGGCAGATTGGGAATGGCGGGAAAATGTTGAAGTT
GAGATTTTGACACCCATTAGGAATCAAATACAATGGTTAGAATATTTACT
GGTAATGTTAGAAAATGTGGTCAAAAAGACACATGAAAATAAGTTTACCA
TCCAAGATAAGACAACATTTTGTCCAACATTGTTGAAATTCCAATGCGGT
GAACACGAACAGTACACAACATTGCACGAAACACTTTGGATAGATGCTGG
TATGGCATGAATTACGTTAAACGTCATTGATTACAAAAGTGATGACGGAT
ACGTCTTGTCGTTACTAAACAAATTTGACGTCAAGTATAAATACATTCTT
GCTGATGACGTCACTTTCAACAAAGTCAAAGCGCTGAACATTGGATTATC
TCACATTGGGAACAACAATAGCATTGTGTTTGTAATGGACCTACATCTAC
AATTGCCGTTGAATATCTTTGACCGTATTCGAAAGCAAGGAATGAAGCTA
AAATCCATAGTTCACATACAAAAAAATGTGGACAGTCGTTTCTATCAGTA
TACAGAGTGGTGGCAAAACCATTATTTCGTTGAAATTGATATTGAAATTC
CATTGGATGAACAGGAGAATAAAGCTTTCCCATTGGTCGGTAACAAAAAC
AACGTGCTCCGATTGGCTCAATATGTGCATGTGACACCTTCTAATGATGC
ATGCTTCATGGCAGATTGGGAATGGCGGGAAAATGTTGAAGTTGAGATTT
TGACACCCATTAGGAATCAAATACAATGGTTAGAATATTTACTGGTAATG
TTAGAAAATGTGGTCAAAAAGACACATGAAAATAAGTTTACCATCCAAGA
TAAGACAACATTTTGTCCAACATTGTTGAAATTCCAATGCGGTGAACACG
AACAGTACACAACATTGCACGAAACACTTTGGATAGATGCTGGTATGGCA
TGAATTACGTTAAACGTCATTGATTACAAAAGTGATGACGGATACGTCTT
GTCGTTACTAAACAAATTTGACGTCAAGTATAAATACATTCTTGCTGATG
ACGTCACTTTCAACAAAGTCAAAGCGCTGAACATTGGATTATCTCACATT
GGGAACAACAATAGCATTGTGTTTGTAATGGACCTACATCTACAATTGCC
GTTGAATATCTTTGACCGTATTCGAAAGCAAGGAATGAAGCTAAAATCCA
TAGTTCACATACAAAAAAATGTGGACAGTCGTTTCTATCAGTATACAGAG
TGGTGGCAAAACCATTATTTCGTTGAAATTGATATTGAAATTCCATTGGA
TGAACAGGAGAATAAAGCTTTCCCATTGGTCGGTAACAAAAACAACGTGC
TCCGATTGGCTCAATATGTGCATGTGACACCTTCTAATGATGCATGCTTC
ATGGCAGATTGGGAATGGCGGGAAAATGTTGAAGTTGAGATTTTGACACC
CATTAGGAATCAAATACAATGGTTAGAATATTTACTGGTAATGTTAGAAA
ATGTGGTCAAAAAGACACATGAAAATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071992-exon-scaffold_66-1575043694:71766..72116 | TCONS_00071992-exon-scaffold_66-1575043694:71766..72116 | Clytia hemisphaerica | exon |
| TCONS_00071992-exon-scaffold_66-1575043694:71008..71232 | TCONS_00071992-exon-scaffold_66-1575043694:71008..71232 | Clytia hemisphaerica | exon |
| TCONS_00071992-exon-scaffold_66-1575043694:69869..70021 | TCONS_00071992-exon-scaffold_66-1575043694:69869..70021 | Clytia hemisphaerica | exon |
| TCONS_00071992-exon-scaffold_66-1575043694:68117..69467 | TCONS_00071992-exon-scaffold_66-1575043694:68117..69467 | Clytia hemisphaerica | exon |
| TCONS_00071992-exon-scaffold_66-1510915933:71766..72116 | TCONS_00071992-exon-scaffold_66-1510915933:71766..72116 | Clytia hemisphaerica | exon |
| TCONS_00071992-exon-scaffold_66-1510915933:71008..71232 | TCONS_00071992-exon-scaffold_66-1510915933:71008..71232 | Clytia hemisphaerica | exon |
| TCONS_00071992-exon-scaffold_66-1510915933:69869..70021 | TCONS_00071992-exon-scaffold_66-1510915933:69869..70021 | Clytia hemisphaerica | exon |
| TCONS_00071992-exon-scaffold_66-1510915933:68117..69467 | TCONS_00071992-exon-scaffold_66-1510915933:68117..69467 | Clytia hemisphaerica | exon |
| TCONS_00071992-exon-scaffold_66-1491911889:71766..72116 | TCONS_00071992-exon-scaffold_66-1491911889:71766..72116 | Clytia hemisphaerica | exon |
| TCONS_00071992-exon-scaffold_66-1491911889:71008..71232 | TCONS_00071992-exon-scaffold_66-1491911889:71008..71232 | Clytia hemisphaerica | exon |
| TCONS_00071992-exon-scaffold_66-1491911889:69869..70021 | TCONS_00071992-exon-scaffold_66-1491911889:69869..70021 | Clytia hemisphaerica | exon |
| TCONS_00071992-exon-scaffold_66-1491911889:68117..69467 | TCONS_00071992-exon-scaffold_66-1491911889:68117..69467 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_66 | supercontig | scaffold_66:68117..72116 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029044 | Nucleotide-diphossugar_trans |
| IPR008428 | Chond_GalNAc |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008376 | acetylgalactosaminyltransferase activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0032580 | Golgi cisterna membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0032580 |
Golgi cisterna membrane |
| molecular_function |
GO:0008376 |
acetylgalactosaminyltransferase activity |
Blast
BLAST of TCONS_00071992 vs. Swiss-Prot (Human)
Match: B4GN4 (N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1 OS=Homo sapiens GN=B4GALNT4 PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 6.582e-33 Identity = 40/140 (28.57%), Postives = 76/140 (54.29%), Query Frame = 1
Query: 217 CFMADWEWRENVEVEILTPIRNQIQWLEYLLVMLENVVKKTHENKITLNVIDYKSDDGYVLSLLNKFDV-KYKYILADDVTFNKVKALNIGLSHIGNNNSIVFVMDLHLQLPLNIFDRIRKFTIQDKTTFCPTLLKFQCG 633
C WR++V V + P++NQ +W+ L + + +T +++ ++ ++D++S+D V L + +Y+Y L F + L G+ + + +SIVF+ DLH+ P NI D IRK ++ + F P +++ CG
Sbjct: 811 CRPLRLAWRQDVMVHFIVPVKNQARWVAQFLADMAALHARTGDSRFSVVLVDFESEDMDVERALRAARLPRYQY-LRRTGNFERSAGLQAGVDAVEDASSIVFLCDLHIHFPPNILDGIRKHCVEGRLAFAPVVMRLSCG 949 HSP 2 Score: 73.1738 bits (178), Expect = 6.582e-33 Identity = 31/63 (49.21%), Postives = 44/63 (69.84%), Query Frame = 3
Query: 684 YGMMAMYKSDWLKVGGFNEKRFGNQWGGEDWELIDRIVATGLYVFHDRMPRFYHIYHNNKKTW 872
+G+ +YKSD+ +VGG N + F +QWGGEDWEL+DR++ GL V R+ FYH YH+ + W
Sbjct: 964 FGLFGIYKSDFDRVGGMNTEEFRDQWGGEDWELLDRVLQAGLEVERLRLRNFYHHYHSKRGMW 1026
The following BLAST results are available for this feature:
|
