TCONS_00071991 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071991
Unique NameTCONS_00071991
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2022

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071991 ID=TCONS_00071991|Name=TCONS_00071991|organism=Clytia hemisphaerica|type=transcript|length=2022bp
CAAGGAATGAAGCTAAAATCCATAGTTCACATACAAAAAAATGTGGACAG
TCGTTTCTATCAGTATACAGAGTGGTGGCAAAACCATTATTTCGTTGAAA
TTGATATTGAAATTCCATTGGATGAACAGGAGAATAAAGCTTTCCCATTG
GTCGGTAACAAAAACAACGTGCTCCGATTGGCTCAATATGTGCATGTGAC
ACCTTCTAATGATGCATGCTTCATGGCAGATTGGGAATGGCGGGAAAATG
TTGAAGTTGAGATTTTGACACCCATTAGGAATCAAATACAATGATTACGT
TAAACGTCATTGATTACAAAAGTGATGACGGATACGTCTTGTCGTTACTA
AACAAATTTGACGTCAAGTATAAATACATTCTTGCTGATGACGTCACTTT
CAACAAAGTCAAAGCGCTGAACATTGGATTATCTCACATTGGGAACAACA
ATAGCATTGTGTTTGTAATGGACCTACATCTACAATTGCCGTTGAATATC
TTTGACCGTATTCGAAAGTTTACCATCCAAGATAAGACAACATTTTGTCC
AACATTGTTGAAATTCCAATGCGGTGAACACGAACAGTACACAACATTGC
ACGAAACACTTTGGATAGATGCTGGTATGGCATGATGGCTATGTataaat
ctgattggttgaaagttggTGgcTTTAACGAGAAGAGGTTTGGAAACCAG
TGGGGTGGAGAAGACTGGGAACTAATTGATCGTATCGTAGCAACAGGATT
ATATGTATTTCATGATCGAATGCCACGtttttatcatatttatcaTAACA
ATAAAAAGACATGGGATGGGAAACATGAATGAAGAGAGTTTGGATCCGCA
GgtggcacaaaacgttgtttgaacgtAATTTGGACGTTGGAGCAATGTTG
TCAGACGTTCTGGAATACTTTGGTGCCAATTTGAGAACTTTAAAAATGAC
TTTTACAGGAAACACCAATCAAGGGATAGAAGAGCCTGTTTATTTGGTGC
CGGATGTGACACCAAAACGTTGTCTGAACGTAATTTGGATGTTTGATGGA
CGTAAGAATGATATTGTCAGAAGTTATGGTATACTCTGGTACCAATTTGA
GAATCATAAAAATGCCTTTTAGGAAAACACCAATCAaggaatagacgata
tcggcttcacataaaaactcagatttgaccctcgagaattccccacaatg
ctttgtaaggaaaaaatttcaccgtgaacttttttccgcacaaagcattg
tggggaattctcgggggtcaaatttgagttttcacgttaagccaaTATCG
TCTATTGAAGAGCCTCTTTTTTTTGGTGACACATGTGACACCAAAACGTT
GTCTGAACGTAATTTGGATGTTTAATGGATGTTAGGATGATATTGTCAGA
AGTTTTGGTATACCTTGGTAGCGACTTGAGAGTTATAGAAATGACTTCAG
AAAGTGATTTATATAAAATATCTGTAATATTTGAGACTTGGATTACAGCA
AAGAAGTCTTCATTTTAATAGTTCAAAAATGAATAAGATCACCAAAAATT
ATGTCAATCCCATGATTTGTATTTTGTACTACTTTGTCACTAAtttacaa
agaaacaaaaaaacaaccttaatctttcaaaactgaaaaaataattaaaa
tgtaGTATGTACAGAATAGGAAcataaaaattattaatttgtaaaatttg
tgaCCAATAGTATGATGTAAGCAAAATCCAGTAGATTTTGTATGCCGGAA
GCTGAATTCCTAATAAGTCAGGCCATTTTTATGCCCTTTTTTATGCAGTC
CGAtcatcggacgctgcccctcctgaattcactaaaattttggtaaaaac
agcttttttggtggaaaaacactagaaaaagtgccctttttgaccACCAC
CTGACGCTGCCCTGTCTTTCTAAAATCTTGCCTGTAAGTAATTAAGTCTa
acgaccgcagtcggaggcgaccagAAGACTCCTCTGTTGATAGCCacaag
tttttataagaatatccaaagc
Run BLAST on NCBI

transcript from alignment at scaffold_66:68117..72116-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071991 ID=TCONS_00071991|Name=TCONS_00071991|organism=Clytia hemisphaerica|type=transcript|length=4000bp|location=Sequence derived from alignment at scaffold_66:68117..72116- (Clytia hemisphaerica)
CAAGGAATGAAGCTAAAATCCATAGTTCACATACAAAAAAATGTGGACAG
TCGTTTCTATCAGTATACAGAGTGGTGGCAAAACCATTATTTCGTTGAAA
TTGATATTGAAATTCCATTGGATGAACAGGAGAATAAAGCTTTCCCATTG
GTCGGTAACAAAAACAACGTGCTCCGATTGGCTCAATATGTGCATGTGAC
ACCTTCTAATGATGCATGCTTCATGGCAGATTGGGAATGGCGGGAAAATG
TTGAAGTTGAGATTTTGACACCCATTAGGAATCAAATACAATGGTTAGAA
TATTTACTGGTAATGTTAGAAAATGTGGTCAAAAAGACACATGAAAATAA
GGTTGGGATTTCTTTTATTTTTACATCCTTTTTACTACATTTCCTTAATC
TAGGAAGAACGAGTCTTAACTTACAATATTTTTTAAGCTCTTCCATTGGT
CTTGCCAATTGAATAGACTTTTTAACCCCCGGGCGGCGTTGCATCATTCT
CGTACAGGATATCCAATACAAGTTGTTTGATTGACGGCGTAAACCGGCTG
AAATGTACCGAGTAACGGCTGAGTTTACCAGGAGCTAGAATTTGACGTCA
AGGTGAGAAAATCAATGTAATGACTTTCAGACATTTGTAGTAAATCCGTG
TCTGGAAACTTTAACCATGTATCCCACGATTTCAAGAGTTGATAGCACGT
TTTTTTATTCATGGGTGTCCGTCAAAGTAGCGTTTGCCAGGACGCCTATA
ACCCTGTGTTTAAAATCGACCTTCTCTTACCCTGAGAGTAATTTGACCTT
TCACTTTCACACGTACACTGAAGTTGAGCTCAGTGCTTTAGCACGTTACA
GTTTATGAACCTATTCTTAATTTAAACTTTCTAGATTACGTTAAACGTCA
TTGATTACAAAAGTGATGACGGATACGTCTTGTCGTTACTAAACAAATTT
GACGTCAAGTATAAATACATTCTTGCTGATGACGTCACTTTCAACAAAGT
CAAAGCGCTGAACATTGGATTATCTCACATTGGGAACAACAATAGCATTG
TGTTTGTAATGGACCTACATCTACAATTGCCGTTGAATATCTTTGACCGT
ATTCGAAAGGTGGGTTATCCTCCTACTTTTGAATGGGTCATTCCATTAAA
TTTCCATACATGGGGTGGACGAACCATTTGAAGTCGAAAAGGATTTCTTG
GAGATGCGTAGATACCCCCTGGATAATAAAAATATATTTGTGTACCTTAA
AGTGACGGTGGACGAACTAAAATCAGTCTTTTACCCCCTTGGAATTTTTA
AGGTAATTTTTTACCCCCTGGAAAAACGAAAAACACTTTTTTAGACCCCC
TGGAAATGTTCGTCCACCCCCCCCTGACTGGAATGGCCCAACACACCAAT
TTCTTTCAAAGAGTATACGCTTAAAATTGAAATTCTTACGCAAACTTTTC
TACGCTCGCTATTTAGTCTTTTAATTTTTGAACAATAACATTATTACTGC
GGATATAGCCAGAACACGAGAAATCGGTAAAGTTACTTGTATATCCAGTG
CATGATTGTTCCTCAATTTTTTGGATTCAACCTATAAGTTCAGGTGTCAC
AGACCCGCCGCTGAAAATATGGCCAAAATTTCATCCTCGGTGGGGAAAAA
CCCTGCAATTTCAGCCCAACTGGGAATTTGACTTTGAAATTCAATGTTAA
AATAAATTGCACTCAAAAACTTGTGGGGACAAGAACAAAATACGTTCAAT
CCTAGCCGTGAGACAGGGCTGTTATAGGCAGTGTTTAAACTAGTCATGTG
ACTTTGTTTAGGATTAAAAACTGACTTAAACTTGACCTAATTCTAAAAAG
ATTGAGAATTCTTCTACGGTTATACGTGGTCCATTCTTGTAAATCATAGA
CTAGTAACTATGTCGTTGTAATTCGCTGCAGCTTACGCTTTCAATGGGCT
CACTACGTTTGCTGAATACAACTCTTTCCCGCGGCAATTCTATTTTTCAT
AAGAACACTTTATAAGCACTATCTCCGCCTTTCTGTGACCAAGGAAAGGC
ATACGCTTGCTAGTCTATGTAAATTACTTCTCAAATTCTATTTAGTTTAC
CATCCAAGATAAGACAACATTTTGTCCAACATTGTTGAAATTCCAATGCG
GTGAACACGAACAGTACACAACATTGCACGAAACACTTTGGATAGATGCT
GGTATGGCATGATGGCTATGTATAAATCTGATTGGTTGAAAGTTGGTGGT
AAGTGGATTTGGATGTTCCATTGAATTAAAAAGGGGGTGGACAAACCTTT
TTAAGTCAAAAAGATTCATGAGGCTGATGAATTTAATGATTTGAGTTTCT
GTTTACGTTATGAAGATGAGAGCACATAGCAAAAATATTGTTTGCACTTT
TTGAAAAAAAATTTCAAAAGTTTTGCACCGACATCTTGCGTCAGCAAGAC
ATCAGTTAAGGAGTAAGGATGCCCCGAAACTAACCTATTTCCTTTAGAAT
TTTATGCTCTTTATTTCCAAAAGTAGTTACGAGAGTTCCGGGAACCTCTT
AGAGAGATAAAGCCCGGTAAAGTTGGGTCCCTGAGAGACTGAAAAGGTTA
ATATAAAAAGTAAAAATCTTGTTGTTTATTTTTTTTTTGTATTTTCAAGG
CTTTAACGAGAAGAGGTTTGGAAACCAGTGGGGTGGAGAAGACTGGGAAC
TAATTGATCGTATCGTAGCAACAGGATTATATGTATTTCATGATCGAATG
CCACGTTTTTATCATATTTATCATAACAATAAAAAGACATGGGATGGGAA
ACATGAATGAAGAGAGTTTGGATCCGCAGGTGGCACAAAACGTTGTTTGA
ACGTAATTTGGACGTTGGAGCAATGTTGTCAGACGTTCTGGAATACTTTG
GTGCCAATTTGAGAACTTTAAAAATGACTTTTACAGGAAACACCAATCAA
GGGATAGAAGAGCCTGTTTATTTGGTGCCGGATGTGACACCAAAACGTTG
TCTGAACGTAATTTGGATGTTTGATGGACGTAAGAATGATATTGTCAGAA
GTTATGGTATACTCTGGTACCAATTTGAGAATCATAAAAATGCCTTTTAG
GAAAACACCAATCAAGGAATAGACGATATCGGCTTCACATAAAAACTCAG
ATTTGACCCTCGAGAATTCCCCACAATGCTTTGTAAGGAAAAAATTTCAC
CGTGAACTTTTTTCCGCACAAAGCATTGTGGGGAATTCTCGGGGGTCAAA
TTTGAGTTTTCACGTTAAGCCAATATCGTCTATTGAAGAGCCTCTTTTTT
TTGGTGACACATGTGACACCAAAACGTTGTCTGAACGTAATTTGGATGTT
TAATGGATGTTAGGATGATATTGTCAGAAGTTTTGGTATACCTTGGTAGC
GACTTGAGAGTTATAGAAATGACTTCAGAAAGTGATTTATATAAAATATC
TGTAATATTTGAGACTTGGATTACAGCAAAGAAGTCTTCATTTTAATAGT
TCAAAAATGAATAAGATCACCAAAAATTATGTCAATCCCATGATTTGTAT
TTTGTACTACTTTGTCACTAATTTACAAAGAAACAAAAAAACAACCTTAA
TCTTTCAAAACTGAAAAAATAATTAAAATGTAGTATGTACAGAATAGGAA
CATAAAAATTATTAATTTGTAAAATTTGTGACCAATAGTATGATGTAAGC
AAAATCCAGTAGATTTTGTATGCCGGAAGCTGAATTCCTAATAAGTCAGG
CCATTTTTATGCCCTTTTTTATGCAGTCCGATCATCGGACGCTGCCCCTC
CTGAATTCACTAAAATTTTGGTAAAAACAGCTTTTTTGGTGGAAAAACAC
TAGAAAAAGTGCCCTTTTTGACCACCACCTGACGCTGCCCTGTCTTTCTA
AAATCTTGCCTGTAAGTAATTAAGTCTAACGACCGCAGTCGGAGGCGACC
AGAAGACTCCTCTGTTGATAGCCACAAGTTTTTATAAGAATATCCAAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044695XLOC_044695Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071991-exon-scaffold_66-1575043694:71824..72116TCONS_00071991-exon-scaffold_66-1575043694:71824..72116Clytia hemisphaericaexon
TCONS_00071991-exon-scaffold_66-1575043694:71008..71232TCONS_00071991-exon-scaffold_66-1575043694:71008..71232Clytia hemisphaericaexon
TCONS_00071991-exon-scaffold_66-1575043694:69869..70021TCONS_00071991-exon-scaffold_66-1575043694:69869..70021Clytia hemisphaericaexon
TCONS_00071991-exon-scaffold_66-1575043694:68117..69467TCONS_00071991-exon-scaffold_66-1575043694:68117..69467Clytia hemisphaericaexon
TCONS_00071991-exon-scaffold_66-1510915933:71824..72116TCONS_00071991-exon-scaffold_66-1510915933:71824..72116Clytia hemisphaericaexon
TCONS_00071991-exon-scaffold_66-1510915933:71008..71232TCONS_00071991-exon-scaffold_66-1510915933:71008..71232Clytia hemisphaericaexon
TCONS_00071991-exon-scaffold_66-1510915933:69869..70021TCONS_00071991-exon-scaffold_66-1510915933:69869..70021Clytia hemisphaericaexon
TCONS_00071991-exon-scaffold_66-1510915933:68117..69467TCONS_00071991-exon-scaffold_66-1510915933:68117..69467Clytia hemisphaericaexon
TCONS_00071991-exon-scaffold_66-1491911889:71824..72116TCONS_00071991-exon-scaffold_66-1491911889:71824..72116Clytia hemisphaericaexon
TCONS_00071991-exon-scaffold_66-1491911889:71008..71232TCONS_00071991-exon-scaffold_66-1491911889:71008..71232Clytia hemisphaericaexon
TCONS_00071991-exon-scaffold_66-1491911889:69869..70021TCONS_00071991-exon-scaffold_66-1491911889:69869..70021Clytia hemisphaericaexon
TCONS_00071991-exon-scaffold_66-1491911889:68117..69467TCONS_00071991-exon-scaffold_66-1491911889:68117..69467Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_66supercontigscaffold_66:68117..72116 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0195685	0.101768	0.257151	0.281797	0.162571	0.104266	0.235838	0.341027	0	0.340491	0.3633	0.356214	1.69845e-05	0.214476	0	1.41339e-07	0	0	0	0	0	0	0.897476	1.06279	0	0.000752536	0.315174	0.22321	0.196694	0.110644
Blast
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BLAST of TCONS_00071991 vs. Swiss-Prot (Human)
Match: B4GN4 (N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1 OS=Homo sapiens GN=B4GALNT4 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.216e-26
Identity = 31/63 (49.21%), Postives = 44/63 (69.84%), Query Frame = 2 
Query:  626 YGMMAMYKSDWLKVGGFNEKRFGNQWGGEDWELIDRIVATGLYVFHDRMPRFYHIYHNNKKTW 814
            +G+  +YKSD+ +VGG N + F +QWGGEDWEL+DR++  GL V   R+  FYH YH+ +  W
Sbjct:  964 FGLFGIYKSDFDRVGGMNTEEFRDQWGGEDWELLDRVLQAGLEVERLRLRNFYHHYHSKRGMW 1026

HSP 2 Score: 59.6918 bits (143), Expect = 3.216e-26
Identity = 29/99 (29.29%), Postives = 54/99 (54.55%), Query Frame = 3 
Query:  282 SNTMITLNVIDYKSDDGYVLSLLNKFDV-KYKYILADDVTFNKVKALNIGLSHIGNNNSIVFVMDLHLQLPLNIFDRIRKFTIQDKTTFCPTLLKFQCG 575
             ++  ++ ++D++S+D  V   L    + +Y+Y L     F +   L  G+  + + +SIVF+ DLH+  P NI D IRK  ++ +  F P +++  CG
Sbjct:  852 GDSRFSVVLVDFESEDMDVERALRAARLPRYQY-LRRTGNFERSAGLQAGVDAVEDASSIVFLCDLHIHFPPNILDGIRKHCVEGRLAFAPVVMRLSCG 949

HSP 3 Score: 25.0238 bits (53), Expect = 3.216e-26
Identity = 7/16 (43.75%), Postives = 12/16 (75.00%), Query Frame = 1 
Query:  238 WRENVEVEILTPIRNQ 285
            WR++V V  + P++NQ
Sbjct:  818 WRQDVMVHFIVPVKNQ 833
The following BLAST results are available for this feature:
BLAST of TCONS_00071991 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
B4GN43.216e-2649.21N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-a... [more]
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