TCONS_00071990 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071990
Unique NameTCONS_00071990
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length567

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071990 ID=TCONS_00071990|Name=TCONS_00071990|organism=Clytia hemisphaerica|type=transcript|length=567bp
ACATGACCACGGTTTTTCGCCGGGTTTCTGTatgaaagattacgtcatta
ttGTTTATCTAATCTGTCTCTATAAAAAGAGGCAGTTGTTGACTTTCAGA
TTCACAACTGCAAGGATTCAACAGTAAAAAAACCATCATCACTTATCGGC
GATATAAGGACAAAcgattttcaaacaattttttagtTCTCAAAAAGACA
AGGAGAATGCCACACGTCGCGGAAGGGCAAACGCTAACATTACCATCTAT
GAGAATATCACTATGGGTTCACATTCGACACTCATTTTGGAAAATGCTAC
AACCAAAGGAGACATCATTGGAgatacaacaacaacaatcacAATGAAAG
GGAGTTGTACTGTTGGTGGGAACGTCACTGGTGGTACAGTCAACATTGGA
TGAGATAAATTtctacatttttcaaaataaaaacttatATTATTGTACTC
TAATATAATTTCTTTACATTTCCACAAATTCTGTTGATTATAATATCGTT
TTATCCAACCTTATGTTCGAGAAGCATCACAGATAcatgctttttataag
aattatgtTCAGTTACC
Run BLAST on NCBI

transcript from alignment at scaffold_66:35622..37475-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071990 ID=TCONS_00071990|Name=TCONS_00071990|organism=Clytia hemisphaerica|type=transcript|length=1854bp|location=Sequence derived from alignment at scaffold_66:35622..37475- (Clytia hemisphaerica)
ACATGACCACGGTTTTTCGCCGGGTTTCTGTATGAAAGATTACGTCATTA
TTGTTTATCTAATCTGTCTCTATAAAAAGAGGCAGTTGTTGACTTTCAGA
TTCACAACTGCAAGGATTCAACAGTAAAAAAACCATCATCACTTATCGGC
GATATAAGGACAAACGATTTTCAAACAATTTTTTAGTTCTCAAAAAGACA
AGGAGGTAAACTTTGTTATACTTTAATGATTGATTTTCAGGATTTTTTTC
TTTAGTTACTTGCACTAACAAAAGGAATCTAAAATTACCCAGGGTGGTCA
ATTGACGAGGCTTCTTCTTGCGCGAATAAGTTTGAGAAACCTGACTGTAT
CTTGTAGGGGATATAATTAGAAGTACAGCCGACTTTCACTAAATCGGGCT
AGAACATGGCGTTCTAAATTCAGAATTTAGAACGCCATGGGCTAGAATGA
AAACTCTGATTTGTTCGAATTAAAGAGAGATTCGAATTGTAGAGAGTATT
ATAAAAGGAAATAGCGCACCGCGCTGAATCTAAAAATAGATTTTATTTTT
GACATAATCATTACTCTCGATGTGTTTGTACGAGTTCCAATCCCATCAAC
CTTTGCGCTAATATCTTTTGCACGTTAATTGCATCGTTTGACATAAGATA
TATAACAGCTTGCACGTATCTTTAATTGAGCCGCGTTGAATTGTGGGATT
GCAACTCGTACAAATGTCAAAAAAAGTGAAAAGTAATAATTATGACNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
CCCTCGAGGAATTCCTAAAAGATTTCTATTGTAATACTCCCGAAACAATC
CCACAATGCATCGCTTTTTTAGAAAAATCAAAAATTCCGATAAGATCTAT
TATAGAAAGATTCGGATAATAGAAGTTCGAATAAGCGAGAGACCATCCAC
TGTAGTACCTTAAAAATTATATATATCATCCTCATTTTCCAGAATGCCAC
ACGTCGCGGAAGGGCAAACGCTAACATTACCATCTATGAGAATATCACTA
TGGGTTCACATTCGACACTCATTTTGGAAAATGCTACAACCAAAGGAGAC
ATCATTGGAGATACAACAACAACAATCACAATGAAAGGGAGTTGTACTGT
TGGTGGGAACGTCACTGGTGGTACAGTCAACATTGGATGAGATAAATTTC
TACATTTTTCAAAATAAAAACTTATATTATTGTACTCTAATATAATTTCT
TTACATTTCCACAAATTCTGTTGATTATAATATCGTTTTATCCAACCTTA
TGTTCGAGAAGCATCACAGATACATGCTTTTTATAAGAATTATGTTCAGT
TACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044694XLOC_044694Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071990-exon-scaffold_66-1575043694:37271..37475TCONS_00071990-exon-scaffold_66-1575043694:37271..37475Clytia hemisphaericaexon
TCONS_00071990-exon-scaffold_66-1575043694:35622..35983TCONS_00071990-exon-scaffold_66-1575043694:35622..35983Clytia hemisphaericaexon
TCONS_00071990-exon-scaffold_66-1510915933:37271..37475TCONS_00071990-exon-scaffold_66-1510915933:37271..37475Clytia hemisphaericaexon
TCONS_00071990-exon-scaffold_66-1510915933:35622..35983TCONS_00071990-exon-scaffold_66-1510915933:35622..35983Clytia hemisphaericaexon
TCONS_00071990-exon-scaffold_66-1491911889:37271..37475TCONS_00071990-exon-scaffold_66-1491911889:37271..37475Clytia hemisphaericaexon
TCONS_00071990-exon-scaffold_66-1491911889:35622..35983TCONS_00071990-exon-scaffold_66-1491911889:35622..35983Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_66supercontigscaffold_66:35622..37475 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.096638	0.112206	0	0	0.227312	0.509634	0.682428	1.37231	3.85723	1.11679	1.1372	1.87022	2.03857	105.173	55.9492	12.429	19.4672	7.90137	3.94632	4.01642	4.36713	0.8881	0.597716	9.41132	63.1305	9.69956	6.54758	1.22778	0.448262
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071990 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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