TCONS_00071989 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071989
Unique NameTCONS_00071989
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length853

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071989 ID=TCONS_00071989|Name=TCONS_00071989|organism=Clytia hemisphaerica|type=transcript|length=853bp
ACATGACCACGGTTTTTCGCCGGGTTTCTGTatgaaagattacgtcatta
ttGTTTATCTAATCTGTCTCTATAAAAAGAGGCAGTTGTTGACTTTCAGA
TTCACAACTGCAAGGATTCAACAGTAAAAAAACCATCATCACTTATCGGC
GATATAAGGACAAAcgattttcaaacaattttttagtTCTCAAAAAGACA
AGGAGAATGCCACACGTCGCGGAAGGGCAAACGCTAAAATTATCAGGGAC
CATCTATGAGAATATCACTATGGGTTCACATTCGACACTCATTTTGGAAA
ATGCTACAACCAAAGGAGACATCATTGGagataaaacaacaacaatcaCA
ATGAAAGGGAGTTGCACCATTGGTGGGAACGTCACTGGTGGTACAGTCAA
CATTGGATGAGATCAATTTCtacatttttaataaaaaataaaaacttata
TTATTGCACTTNagaaaattttgagaaaatttgcaAGTTTTAGTTCCATT
CTGGATCACTTTTTGCGAAAAAATGAGTcacacgtagggtccatttttcg
aagtTCAGCGGCAcaccccgtcggtcggcaagggtagtattGTCCCCCCG
GTTTATTTTCATCAAGAATAATTTCATCGAGGGTGAAGAGATACAGAAAA
GATTGAAGGATGAAATAAACTTTTCTAATAACACGTTTTCAGACTTATAA
ATactttttcaatgtttattatttgaaaaatttattggTAAAATAAAATT
CAGTAAACAAATCACTAAAACTAAATTTCGGTCCTTTCCGTCAGCGCGTG
TCGAGTTATGACGCCCAAAAAAATGAGACTAAAAGGTTTAAATACTTtag
aaa
Run BLAST on NCBI

transcript from alignment at scaffold_66:24803..37475-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071989 ID=TCONS_00071989|Name=TCONS_00071989|organism=Clytia hemisphaerica|type=transcript|length=12673bp|location=Sequence derived from alignment at scaffold_66:24803..37475- (Clytia hemisphaerica)
ACATGACCACGGTTTTTCGCCGGGTTTCTGTATGAAAGATTACGTCATTA
TTGTTTATCTAATCTGTCTCTATAAAAAGAGGCAGTTGTTGACTTTCAGA
TTCACAACTGCAAGGATTCAACAGTAAAAAAACCATCATCACTTATCGGC
GATATAAGGACAAACGATTTTCAAACAATTTTTTAGTTCTCAAAAAGACA
AGGAGGTAAACTTTGTTATACTTTAATGATTGATTTTCAGGATTTTTTTC
TTTAGTTACTTGCACTAACAAAAGGAATCTAAAATTACCCAGGGTGGTCA
ATTGACGAGGCTTCTTCTTGCGCGAATAAGTTTGAGAAACCTGACTGTAT
CTTGTAGGGGATATAATTAGAAGTACAGCCGACTTTCACTAAATCGGGCT
AGAACATGGCGTTCTAAATTCAGAATTTAGAACGCCATGGGCTAGAATGA
AAACTCTGATTTGTTCGAATTAAAGAGAGATTCGAATTGTAGAGAGTATT
ATAAAAGGAAATAGCGCACCGCGCTGAATCTAAAAATAGATTTTATTTTT
GACATAATCATTACTCTCGATGTGTTTGTACGAGTTCCAATCCCATCAAC
CTTTGCGCTAATATCTTTTGCACGTTAATTGCATCGTTTGACATAAGATA
TATAACAGCTTGCACGTATCTTTAATTGAGCCGCGTTGAATTGTGGGATT
GCAACTCGTACAAATGTCAAAAAAAGTGAAAAGTAATAATTATGACNNNN
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CCCTCGAGGAATTCCTAAAAGATTTCTATTGTAATACTCCCGAAACAATC
CCACAATGCATCGCTTTTTTAGAAAAATCAAAAATTCCGATAAGATCTAT
TATAGAAAGATTCGGATAATAGAAGTTCGAATAAGCGAGAGACCATCCAC
TGTAGTACCTTAAAAATTATATATATCATCCTCATTTTCCAGAATGCCAC
ACGTCGCGGAAGGGCAAACGCTAACATTACCATCTATGAGAATATCACTA
TGGGTTCACATTCGACACTCATTTTGGAAAATGCTACAACCAAAGGAGAC
ATCATTGGAGATACAACAACAACAATCACAATGAAAGGGAGTTGTACTGT
TGGTGGGAACGTCACTGGTGGTACAGTCAACATTGGATGAGATAAATTTC
TACATTTTTCAAAATAAAAACTTATATTATTGTACTCTAATATAATTTCT
TTACATTTCCACAAATTCTGTTGATTATAATATCGTTTTATCCAACCTTA
TGTTCGAGAAGCATCACAGATACATGCTTTTTATAAGAATTATGTTCAGT
TACCAAAGTCAATGATGTGTTATTCTTAGCATCTTCTTAAATTTTTTTGG
CCAATTTCAATTTTCGGGGGGAGGGGGTTACTTGTGTAAAGAAGGGGTAC
GGGGATGAGCCGTGCTGGTCAGGGTATCTCTTGTCACCTTCATCAGTCCC
ACGTAGGGTCGCAAAAACACCAAAATAGAAAAATCAGTCCCTCGTAGGGT
ACCTTTTTGGTGATTTAGGGAAAAAGTAGAAAATTTTGAGAAAATTTGCG
AGTTTTAGTTCCATTCTGGATCAATTTTTGCGAAAAAATGAGTCACACGT
AGGGTCCATTTTTCGAAGTTCAGCGGCACACCCCGTCGGTCGGCAAGGGT
AGTATTGTCCCCCCCGGTTTATTTTCATCAAGAATAATTTCATCGAGGGT
GAAGAGATACAGAAAAGATTGAAGGATGAAATAAACTTTTCTAATAACAC
GTTTTCAGACTTATAAATACTTTTTCAATGTTTATCATTTGAAAAATTTA
TTGGTAAAATAAAATTCAGTAAACAAATCACCAAAACTAAATTTCGGTCC
TTTCCGTCAGCGCGTGTCGAGTTATGACGCCCAAAAAAATGAGACTAAAA
GGTTTAAATACTTTAGAAAGCATTTTTTTAAAGCGATCCTACAGTAAAAG
CATATGCATTTTGCATTAAAATACACTTTTTTTTATAAGAATATCCAAAA
ATTTTGAAACCATTGTTAATGTTAAATTTTAGCCTTTTAAATCCTAAAAA
TTGTTCTCGTTCTTATCTTTACTGTTTTGTGTTTTTGAGCAATTTTGCTA
AGAAATTGGGTGTTTTAAAGCCAGTAAAGCATTAAAATTATTTCTGAACT
GGATCTTAATATTTAAGTAATGAAACCTTTATTGGCCCAGCTAGCTTTAG
CGTACTGGGCCTTTCATTAGCATTCTGCCCGGTGTCAGTGTGTAACAATT
TACTAGGCGATACGCGTTTTCATATANNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNACGGTGGAGTGCTTTTTCTACCGCGGCGGAGTGCTCACT
CAAAACAGCGCACTCACTCTCACGGATTAGAATAAAAAAGTAAACAAAAC
TCGGTACTTTTTTTACACTTTATTATTATGTTTTTTTTAATGAGACTCTT
GAAAAACTAATTGCTGAACTAAATTAACAGCGTTTTTGAAAACTTGTTTT
TTATTTTATTAAATGAGAGGTGTTTTATCATCTTATGTGCACAATTTTTG
ATATACAATTCAATTCACTCAAATCAAAACAAACTCACATCCTGATTATT
TTTTGATTTTAATGTATTATATAAAAGAAGGTGAGTACAATGGAATANNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTATTTTGA
AAAAATTGAAAGTACTTGAAAGTACTTGAAACAAGATACCAACAACAAGA
CAAGGAGTTAAATAAAACTATTCACAAAAAGTATGATTTGTGAAATGAAT
GAAAAGAACATAAACTGAACTGTACCTACCAGCTAGTTACTCCAAAACAA
AAATATTCATGTAAGGGGAAAAATCTCTTTCAAAAGAAAAAGATGAACAT
TTTGTTAGAAAAACGACATCAAGAATATAAAAGATCAGGGGATCAAGGGC
CACTGCAGGCATAAGAAAACTTTTTTTTTTATAAAAGCCAAAAAGAAAAA
AAGCAACAGCTTTTACAAAACATAAAATTATATGTATTTGTTCATATNAT
ATTGACCTCCAATTTTGCTATAAAAATTATATATAGTATCTACATAAAAT
TACTTCCAAATCCAAGTGGTTGTTTTTAAATTGGCAAAAGTCCAATCAAA
ATTTTCATAAATTTTATAAGTATATAAGCATAGCATAAGTTTTGAAAGAC
TTTCACAGTAGGTATAAATTTAAGTCTGAACGTGTTCAACAACACCAGGG
GACAACAAAAAATTATAAGGTAGAAGTATGCTCCGGGGGAGAGGGGGCAC
CAACCTTGACGACCANTTTATATTTTTTTCTCATCCATAACTCTGAGAAA
CTCAAATATCGCGATGAGAATAGAAGAAAAAATAAGCCGTGTCCATTCAT
TTTATCTTCCCTCTTTTTCGAGGGAACGTTGCCTGAGATTAGATTGAAGC
AAAATCCTGTATTGCACCGTTTGGAACTAGTCTGTCTTTCCAATCCACTC
TCCCGCGGCAATTTTTTATAAGAACTCTTTATTATAAGCACTATTCCCGC
GTTCCTGTGTCCAAGGAAAGACAGACGCTTGCTAGTCTACTCTTTTATAT
GTATTTTGTCTTTTTCTTTTTATAATACAGTGAAGAGGGACAGGTCAAGT
ACTTATAAATAATACATAGATCGATCGAAATGTTTTTGACTTTTTTCATA
GTGAATGGATTATAAAATAATAACATAATCAATTTGATCGAAGCTACAAA
GACACAAAAAGCTAGTCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNCACCTGAGCGTCCCACTACCGTCCCACCTTAGCGTCCCACTACCGTCC
CACTACCGTCCCACCTTAGCGTCCCACTACCGTCCCACCTTAGCCACCGT
CCCACGTCCCAAAGTCTTTATAAAACGGCGCGAATCTGATTTACCACATT
TGTGGAGCAAGAAGCAAAAGTCATCTTTTAAAAGAACAAAAACATTGCGT
ACGAAGAAAACGAAAGTAGCACAGACAGAAAGAAAGAAAGACAAAACGAC
ATACAGACTACCGCTATTAATATATAGATATCTGTGATAAGAGTTCACAC
TTTTACAAAGTTTGTCAATTTTTCTTCCAAATTATTNACAGAAAGAAAGA
AAGAAAGAAAGAAAGAAAGACAAAACGACATACAGACTAGCGCTATTAAT
ATATAGATATCTGTGATTGATAAGAGTTCACACTTTTACAAAGTTTGTCA
ATTTTTCTTCCAAATTATTCTAATCTAACGCTTAAATTTATATTTCGTGA
TTAGAAAGGAGATGTGTTTCTTATGCTGACAAGGCTTAATTAACAATAGA
ATTTCTCAAAAATTGCGAGGAGGGGAGAGTTTAAAAAATAATACTTTGGC
AAGCAAATGGCGGCAGGAAATACATTAAATTATGTTCTTTAAGATTCTGA
AAATTTCATCGTTGGAAAGGCCAAGGATAATTTTATAAAAAAAATATTCT
AATCATTTACTGACATTATTCAACCGAATACACGTTTTTTATAAGAACAA
ACCATATAAGAACATAAGGCTTCCATGGCCAAAATGTTAAGAACAAGTTA
AGAACATTTTAAAGCTTTGCAGACCTTAAAACACCCAATTTCTTAGGAAA
AGGGACAAAAATACTCAAAAAACGGCGAAATTAACAACATGTTAAAAACA
TTAAGGCTTAAAACTCAAAAAGTTAAGAACACCCGAAGGCTTCAAATATT
CTTTTGATGTTCTTATAATAAATGTGAATTGTTCTTGGCTAAAATTGTTT
ACCGGTACGAACAAGTATTGGCATACCTTTTCTCGTGACGTACAATTTCT
CAAACCTTCTTTAAAAACACTTCAACTTGTCTTTGATGGGTGTTAGGCGT
GATTCAAGTGTAAAGACTACATTACAGTACTAGTACTTATAACAACCTGT
AAAATTTGATGAGACTTGGCTGATCTTATTTTTTGGCACATTGCGCCTCA
AATTGATCTTATCCTATTCTTATTTATAGGGTTAATTGAGGTATTTTAGG
CGTTATACTCAATTTTCACTACTTTAACCCCTAAATTGCTTGAAATTGAG
TACTTTCAGGCTCAGCATTGTTCTTAAATTGTTCTTTTTTGTCGGCNTTG
AAATTGAGTAATTTCAGGCTCAGCATTGTTCTTAAGTTGTTCTTTTTTGT
CGGTATTTTTAGCCTCAATGTTCATAAATATAATGACGGTCAAAAAATCG
TTCTTGTCTTTAGGCATGGTACCATTGAGTTTCAAGCCCGAAGCGCTAGA
GGCGAAATTTTAACCCTTCTCAGACAAGAGAAATTGAAGCCACTTATTTC
CCATCCCAAACGCGCATAAAATGCGCCGTAATCATGACGACTAATTGTAT
CTATCGGTTCCTTTGTTTTGGAGGACTACATTTTTTGAAATCTACTGATA
GATTTTAGTTTCAATCCGGCGTTGGTGTAAAAACTACGCGCGGGCGTTCT
GGATGGGAAATAAGTCGTTTCATTTCCCATCCAGGAGTCTCGCCTCTAGC
CCTTCGGGCTTGAAACTCAATGCATGGTACAGCATGGCGCTATCCTAGAG
ATTGATAATCGATACAAAGTCTTAACACTTTAATGTACACGTTTCTTATA
AGAACATAAGGCTTTGATGGCCAAAATGTATGAGCAAGTTAAGAACATTT
GAAGGCTTTTCGGACTCTAAAGCATCCGATTTCTTAGGAAAATGGACAAA
AATGCTCCTAAAATGGTGGTAATATGAGAACATGTTAAGAACATTTTTAG
GCTTGAAACTCAAAAAGTTAGGAACATCCAAAGGCTTCAAAAATTTTGGA
TTCTCTTAAAAATACGTGTATAAACTTAGGCGTTTATACTTTCATGATCA
GAACTTTTTTCGAAAGTTTATGCTACTAAAATGTCTATGTGGTAAAATTT
CATGATGTTTAGATCTCGGGAAATACATAATTGTGTTTACAAATATAGTA
TAAAATCTATTCACGTTGATAAGTTCGCTTATTTTTCAATGATATCATAA
AAGTTTTTTTACAACACACTTTTTTTCTCTTATAAAAACAATTCACTGAG
ACTCAAAATCGCCAAAAAATAAAGAACAATCTAAGAACAATGCTGAGCCT
GGAATTACTCAATTTCAAGCAATATAGGGGTCAAAGTAGCAAAAATTGGG
TATAAATCCTAAAATNTCTTATAAAAACAATTCACTGAGACTCAAAATCG
CCAAAAAATAAAGAACAATCTAAGAACAATGCTGAGCCTGGAATTACTCA
ATTTCAAGCAATATAGGGGTCAAAGTAGCAAAAATTTGGCATAAATCCTG
AAACACTTCAAACTCACCCTATAAATAAGAACAGAATAAGAACAATTTGA
GCCTCAAAGTGGCAATAAAATAAGAACAGCCGAGCCTCCCCAAAAATTAC
ATGATTCTTATAAAAAGAAGTGTATCATAAAGGTTCTCTTAGAAAATGTA
ATCAGAACTGGTTTCTTAGAAACCGCACTTCTACGAAGTATCCATTTAAT
TGCTGAATGTGACATTATAAGCTACAAACAAACCATTGCCTTTATCAAAT
GTGATGGAGAACTCAAAATAAGAAATGGAGGGTGTTGATTTTTTTTTGTA
TCTCCGTATTCATCCCGATCATGCAATTCATTACGTAATCTTTGTTTTTT
TCGAATTTATAAAATGAAACTAGTGACACATGACCACGGTTTTTCGCCGG
GTTTCTGTATGAAAGATTACGTCATTATTGTTTATCTAATCTGTCTCTAT
AAAAAAAGGCAGTTGTTGACTTTCAGATTCACAACTGCAGAGATTCAACA
GTAAAAAAACCATCATCACTTATCGGCGATAAAAGGACAAACGATTTTCA
AACAATTTTTTAGTTCTCAAAAAGACAAGGAAGTAAACTTTGTTATTTTT
TAATGATTGATTTTCAGGATTTTTTTCTTTAGTCACTTTCACTAAAAAAG
GAATCTAAAATTACCCAGGGTGGTCAATTGACGAGGCTTCTTCTTGCGGG
AATAAGTTTGAGAAACCGGACTGTATCTTGTAGGGGGTCTATCATAATTA
GAAGTACAGTGGACTTTGACTAAATCGGGCTNTCCCTCGAGGAATTCCTA
AAAGATTTCTATTGTAATACTCCCGAAACAATCCCACAATGCATCGCTTT
TTTAGAAAAATCAAAAATTCCGATAAGATCTATTATAGAAAGATTCGGAT
AATAGAAGTTCGAATAAGCGAGAGAACATCCACTGTAGAACCTTAAAAAT
TATATATATCACCCTCATTTTCCAGAATGCCACACGTCGCGGAAGGGCAA
ACGCTAAAATTATCAGGGACCATCTATGAGAATATCACTATGGGTTCACA
TTCGACACTCATTTTGGAAAATGCTACAACCAAAGGAGACATCATTGGAG
ATAAAACAACAACAATCACAATGAAAGGGAGTTGCACCATTGGTGGGAAC
GTCACTGGTGGTACAGTCAACATTGGATGAGATCAATTTCTACATTTTTA
ATAAAAAATAAAAACTTATATTATTGCACTTNAGAAAATTTTGAGAAAAT
TTGCAAGTTTTAGTTCCATTCTGGATCACTTTTTGCGAAAAAATGAGTCA
CACGTAGGGTCCATTTTTCGAAGTTCAGCGGCACACCCCGTCGGTCGGCA
AGGGTAGTATTGTCCCCCCGGTTTATTTTCATCAAGAATAATTTCATCGA
GGGTGAAGAGATACAGAAAAGATTGAAGGATGAAATAAACTTTTCTAATA
ACACGTTTTCAGACTTATAAATACTTTTTCAATGTTTATTATTTGAAAAA
TTTATTGGTAAAATAAAATTCAGTAAACAAATCACTAAAACTAAATTTCG
GTCCTTTCCGTCAGCGCGTGTCGAGTTATGACGCCCAAAAAAATGAGACT
AAAAGGTTTAAATACTTTAGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044694XLOC_044694Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071989-exon-scaffold_66-1575043694:37271..37475TCONS_00071989-exon-scaffold_66-1575043694:37271..37475Clytia hemisphaericaexon
TCONS_00071989-exon-scaffold_66-1575043694:24803..25450TCONS_00071989-exon-scaffold_66-1575043694:24803..25450Clytia hemisphaericaexon
TCONS_00071989-exon-scaffold_66-1510915933:37271..37475TCONS_00071989-exon-scaffold_66-1510915933:37271..37475Clytia hemisphaericaexon
TCONS_00071989-exon-scaffold_66-1510915933:24803..25450TCONS_00071989-exon-scaffold_66-1510915933:24803..25450Clytia hemisphaericaexon
TCONS_00071989-exon-scaffold_66-1491911889:37271..37475TCONS_00071989-exon-scaffold_66-1491911889:37271..37475Clytia hemisphaericaexon
TCONS_00071989-exon-scaffold_66-1491911889:24803..25450TCONS_00071989-exon-scaffold_66-1491911889:24803..25450Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_66supercontigscaffold_66:24803..37475 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.161163	0.355484	0	0.159806	0.167168	0.141653	0	1.00872	2.09686	0	0.400157	0.76341	1.19722	52.4704	28.0159	4.32485	7.36285	4.08374	2.60769	1.73769	0.804446	0.166521	0.236386	9.49593	22.4409	3.15293	4.17281	0.557761	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071989 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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