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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071987 ID=TCONS_00071987|Name=TCONS_00071987|organism=Clytia hemisphaerica|type=transcript|length=1566bp CCAAGTACTAAACGTGTATTTGGGTTGTAATGGAggcttattttgaaaaa aaagtaattcAATCTGGCGTTATTTTACTACCAAGATTTGCATGTGTTAA TGTTAACTAACGAATGTACTAATTTTCTCTTTATTAGTGATAACAAAAGT AAAATGAGTAAAACTAATACACTAATATGTGTTTGCCATTACGATGGTCA ATCTTCTTATGGTCAAATCAATGAATTATCTGACAACAGCATTTCTCGAT TATTGGAGGCGAAAAATAAACGAGAACAACTTGGTGGTGCCAATCTTCAT CTAAAACAAATCAAACAGCTTCCAGAGGAATTTAATGTTCAGACGCATGG TATCCACTCTCGTCCATGTTATAAACTCTTCACGTCAATCTTAGGAGATA AACGATACTCAACAGAAAAATCTAAAGAACCGAGTCGTAAGTCACCGCGA TTTTCAAATCCTGAGCAAGAACGAGCGTTATAATTCACTCCGAACGGGCT ATTTCCAAATCTCTGTCAATTATGTGGCAAAAAACAAATTCATCGTAAAA AGAAGAGATACGAGACTTACAAAATTACCACTAAAAACTCTGAAGCAGCG ATCAAATCCACAGCAAAAGCCAAAAACGAACCAATGTACTACAAAATTGC CCACTTAGATATCGTCGCGAAAGAATTTAAAGTTCATCAGCCATGTTATA AAGGTTTCACCCTCGACCATTACTGCGAACAAAAGAAACTATATAATCCT ACTCCAGAAAGTATACCTCAAGAAGAAGAAACCTCAAAGCAAAGCTATTC AAAGTCGAATTACGAAGAAGTCAAAGAGTATGTCAGTGACATAATAATAA ATGAGAAAAAGCCAGCAACAATGAAACTTCTTCACGAAATTTATGGATTG GAAGTCAACAACTCGAGTTAtaaattaaaacttaaaaatcgCTTGGAAAA GGATTTTGGTGACAAGATATGCTTTTTGAgtcaacaaaataaaacattaa cTGACATTGTTATATCGAGTGAATATTTCACTGCGGATACTGTTTTACAT TCCGATGAGCAAACGATAAAAAATGCAGCCAAAGTACTGagaaagaacat ttttgaaaagttcagCTCTTATACAATGGAAGAGTGGCCACCTGACCCTA ATAAGCTTGATTCAACTGAGCTCGAGCCACCTGAATCTGTAGTACTCTTT GTCGAGTCTTTGCTTCAACCATCTGGTGAACGTACACCAAATATAAACAG AATCGCAAACTGTCTAGCGCAAGATATTGTGTACAATGTTCTTCAACGTA AAGTGCCCCTTAAAAAGCAATTTCTTTTGGGACTTGGACTTCATAGCTTG TCTGGATCCAGGCAGATCATTGACATTTTGTTTCGATTGGGTAGCTGTGT CAGCTACGATTATGTGTGCAATGTGGAGACCGCATACGCAGAAGCTGCAC AAGAGAAAGCAAAACTGGGCTTCACTTTACCCTTGCAGCCAATTCTTCGA GAACTCATAATTTTCTCTCACTTTTGGGTGGACAACTTCGACGTTCTAGT TGACAAGCAGTCAGGN Run BLAST on NCBI protein sequence of TCONS_00071987-protein >TCONS_00071987-protein ID=TCONS_00071987-protein|Name=TCONS_00071987-protein|organism=Clytia hemisphaerica|type=polypeptide|length=311bp
MYYKIAHLDIVAKEFKVHQPCYKGFTLDHYCEQKKLYNPTPESIPQEEET SKQSYSKSNYEEVKEYVSDIIINEKKPATMKLLHEIYGLEVNNSSYKLKL KNRLEKDFGDKICFLSQQNKTLTDIVISSEYFTADTVLHSDEQTIKNAAK VLRKNIFEKFSSYTMEEWPPDPNKLDSTELEPPESVVLFVESLLQPSGER TPNINRIANCLAQDIVYNVLQRKVPLKKQFLLGLGLHSLSGSRQIIDILF RLGSCVSYDYVCNVETAYAEAAQEKAKLGFTLPLQPILRELIIFSHFWVD NFDVLVDKQSX Run BLAST on NCBI transcript from alignment at scaffold_66:181188..182917+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071987 ID=TCONS_00071987|Name=TCONS_00071987|organism=Clytia hemisphaerica|type=transcript|length=1730bp|location=Sequence derived from alignment at scaffold_66:181188..182917+ (Clytia hemisphaerica) CCAAGTACTAAACGTGTATTTGGGTTGTAATGGAggcttattttgaaaaa
aaagtaattcAATCTGGCGTTATTTTACTACCAAGATTTGCATGTGTTAA
TGTTAACTAACGAATGTACTAATTTTCTCTTTATTAGTGATAACAAAAGT
AAAATGAGTAAAACTAATACACTAATATGTGTTTGCCATTACGATGGTCA
ATCTTCTTATGGTCAAATCAATGAATTATCTGACAACAGCATTTCTCGAT
TATTGGAGGCGAAAAATAAACGAGAACAACTTGGTGGTGCCAATCTTCAT
CTAAAACAAATCAAACAGCTTCCAGAGGAATTTAATGTTCAGACGCATGG
TATCCACTCTCGTCCATGTTATAAACTGTAAGTGAATTTAATTTATAAAT
GACTatcggaaaaataaaaatatttggctCCCTCGCAAGTGTATTTGACT
CACAGGGCGATTTTTTAGTTTTACGTTTGGTTTAAATGAAAGCAATTAAA
TGCCATATCCAACTAACGCATCGCTCCTTTTTTCGTTTCAGCTTCACGTC
AATCTTAGGAGATAAACGATACTCAACAGAAAAATCTAAAGAACCGAGTC
GTAAGTCACCGCGATTTTCAAATCCTGAGCAAGAACGAGCGTTATAATTC
ACTCCGAACGGGCTATTTCCAAATCTCTGTCAATTATGTGGCAAAAAACA
AATTCATCGTAAAAAGAAGAGATACGAGACTTACAAAATTACCACTAAAA
ACTCTGAAGCAGCGATCAAATCCACAGCAAAAGCCAAAAACGAACCAATG
TACTACAAAATTGCCCACTTAGATATCGTCGCGAAAGAATTTAAAGTTCA
TCAGCCATGTTATAAAGGTTTCACCCTCGACCATTACTGCGAACAAAAGA
AACTATATAATCCTACTCCAGAAAGTATACCTCAAGAAGAAGAAACCTCA
AAGCAAAGCTATTCAAAGTCGAATTACGAAGAAGTCAAAGAGTATGTCAG
TGACATAATAATAAATGAGAAAAAGCCAGCAACAATGAAACTTCTTCACG
AAATTTATGGATTGGAAGTCAACAACTCGAGTTAtaaattaaaacttaaa
aatcgCTTGGAAAAGGATTTTGGTGACAAGATATGCTTTTTGAgtcaaca
aaataaaacattaacTGACATTGTTATATCGAGTGAATATTTCACTGCGG
ATACTGTTTTACATTCCGATGAGCAAACGATAAAAAATGCAGCCAAAGTA
CTGagaaagaacatttttgaaaagttcagCTCTTATACAATGGAAGAGTG
GCCACCTGACCCTAATAAGCTTGATTCAACTGAGCTCGAGCCACCTGAAT
CTGTAGTACTCTTTGTCGAGTCTTTGCTTCAACCATCTGGTGAACGTACA
CCAAATATAAACAGAATCGCAAACTGTCTAGCGCAAGATATTGTGTACAA
TGTTCTTCAACGTAAAGTGCCCCTTAAAAAGCAATTTCTTTTGGGACTTG
GACTTCATAGCTTGTCTGGATCCAGGCAGATCATTGACATTTTGTTTCGA
TTGGGTAGCTGTGTCAGCTACGATTATGTGTGCAATGTGGAGACCGCATA
CGCAGAAGCTGCACAAGAGAAAGCAAAACTGGGCTTCACTTTACCCTTGC
AGCCAATTCTTCGAGAACTCATAATTTTCTCTCACTTTTGGGTGGACAAC
TTCGACGTTCTAGTTGACAAGCAGTCAGGN Coding sequence (CDS) from alignment at scaffold_66:181188..182917+ >TCONS_00071987 ID=TCONS_00071987|Name=TCONS_00071987|organism=Clytia hemisphaerica|type=CDS|length=933bp|location=Sequence derived from alignment at scaffold_66:181188..182917+ (Clytia hemisphaerica) ATGTACTACAAAATTGCCCACTTAGATATCGTCGCGAAAGAATTTAAAGT TCATCAGCCATGTTATAAAGGTTTCACCCTCGACCATTACTGCGAACAAA AGAAACTATATAATCCTACTCCAGAAAGTATACCTCAAGAAGAAGAAACC TCAAAGCAAAGCTATTCAAAGTCGAATTACGAAGAAGTCAAAGAGTATGT CAGTGACATAATAATAAATGAGAAAAAGCCAGCAACAATGAAACTTCTTC ACGAAATTTATGGATTGGAAGTCAACAACTCGAGTTAtaaattaaaactt aaaaatcgCTTGGAAAAGGATTTTGGTGACAAGATATGCTTTTTGAgtca acaaaataaaacattaacTGACATTGTTATATCGAGTGAATATTTCACTG CGGATACTGTTTTACATTCCGATGAGCAAACGATAAAAAATGCAGCCAAA GTACTGagaaagaacatttttgaaaagttcagCTCTTATACAATGGAAGA GTGGCCACCTGACCCTAATAAGCTTGATTCAACTGAGCTCGAGCCACCTG AATCTGTAGTACTCTTTGTCGAGTCTTTGCTTCAACCATCTGGTGAACGT ACACCAAATATAAACAGAATCGCAAACTGTCTAGCGCAAGATATTGTGTA CAATGTTCTTCAACGTAAAGTGCCCCTTAAAAAGCAATTTCTTTTGGGAC TTGGACTTCATAGCTTGTCTGGATCCAGGCAGATCATTGACATTTTGTTT CGATTGGGTAGCTGTGTCAGCTACGATTATGTGTGCAATGTGGAGACCGC ATACGCAGAAGCTGCACAAGAGAAAGCAAAACTGGGCTTCACTTTACCCT TGCAGCCAATTCTTCGAGAACTCATAATTTTCTCTCACTTTTGGGTGGAC AACTTCGACGTTCTAGTTGACAAGCAGTCAGGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00071987-exon-scaffold_66-1491911889:181188..181564 | TCONS_00071987-exon-scaffold_66-1491911889:181188..181564 | Clytia hemisphaerica | exon |
TCONS_00071987-exon-scaffold_66-1510915933:181188..181564 | TCONS_00071987-exon-scaffold_66-1510915933:181188..181564 | Clytia hemisphaerica | exon |
TCONS_00071987-exon-scaffold_66-1575043694:181188..181564 | TCONS_00071987-exon-scaffold_66-1575043694:181188..181564 | Clytia hemisphaerica | exon |
TCONS_00071987-exon-scaffold_66-1491911889:181729..182917 | TCONS_00071987-exon-scaffold_66-1491911889:181729..182917 | Clytia hemisphaerica | exon |
TCONS_00071987-exon-scaffold_66-1510915933:181729..182917 | TCONS_00071987-exon-scaffold_66-1510915933:181729..182917 | Clytia hemisphaerica | exon |
TCONS_00071987-exon-scaffold_66-1575043694:181729..182917 | TCONS_00071987-exon-scaffold_66-1575043694:181729..182917 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_66 | supercontig | scaffold_66:181188..182917 + |
Blast
The following BLAST results are available for this feature:
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