|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071986 ID=TCONS_00071986|Name=TCONS_00071986|organism=Clytia hemisphaerica|type=transcript|length=4131bpRun BLAST on NCBI protein sequence of TCONS_00071986-protein >TCONS_00071986-protein ID=TCONS_00071986-protein|Name=TCONS_00071986-protein|organism=Clytia hemisphaerica|type=polypeptide|length=309bp MGDCSDLDRQIEQLRRCEIISEQEVKALCAKAREILIEESNVQRVDSPVTRun BLAST on NCBI transcript from alignment at scaffold_66:134951..144764+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071986 ID=TCONS_00071986|Name=TCONS_00071986|organism=Clytia hemisphaerica|type=transcript|length=9814bp|location=Sequence derived from alignment at scaffold_66:134951..144764+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_66:134951..144764+ >TCONS_00071986 ID=TCONS_00071986|Name=TCONS_00071986|organism=Clytia hemisphaerica|type=CDS|length=11160bp|location=Sequence derived from alignment at scaffold_66:134951..144764+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00071986 vs. Swiss-Prot (Human)
Match: PP4C (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Homo sapiens GN=PPP4C PE=1 SV=1) HSP 1 Score: 559.681 bits (1441), Expect = 0.000e+0 Identity = 263/309 (85.11%), Postives = 286/309 (92.56%), Query Frame = 3
Query: 2499 MGDCSDLDRQIEQLRRCEIISEQEVKALCAKAREILIEESNVQRVDSPVTVCGDIHGQFYDLKELFKVGGLVPDTNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECVRKYGSVTVWRYCTEVFDYLSLSAIIDDKIFCVHGGLSPHIKTLDQIRLLDRKQEVPHDGPMCDLLWSDPEDIKSESFGTSPRGAGFLFGAPVVQEFNETNSLDLICRAHQLVMEGMKWHFNESVLTVWSAPNYCYRCGNVAAILELDENLRRRFIVFEAAPQNARGIPAKRPQADYFL 3425
M + SDLDRQIEQLRRCE+I E EVKALCAKAREIL+EESNVQRVDSPVTVCGDIHGQFYDLKELF+VGG VP+TNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDEC+RKYGSVTVWRYCTE+FDYLSLSAIID KIFCVHGGLSP I+TLDQIR +DRKQEVPHDGPMCDLLWSDPED + +G SPRGAG+LFG+ VV +FN N +D+ICRAHQLVMEG KWHFNE+VLTVWSAPNYCYRCGNVAAILELDE+L++ FI+FEAAPQ RGIP+K+P ADYFL
Sbjct: 1 MAEISDLDRQIEQLRRCELIKESEVKALCAKAREILVEESNVQRVDSPVTVCGDIHGQFYDLKELFRVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVTVWRYCTEIFDYLSLSAIIDGKIFCVHGGLSPSIQTLDQIRTIDRKQEVPHDGPMCDLLWSDPED--TTGWGVSPRGAGYLFGSDVVAQFNAANDIDMICRAHQLVMEGYKWHFNETVLTVWSAPNYCYRCGNVAAILELDEHLQKDFIIFEAAPQETRGIPSKKPVADYFL 307 The following BLAST results are available for this feature:
BLAST of TCONS_00071986 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.