TCONS_00071983 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071983
Unique NameTCONS_00071983
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3304

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071983 ID=TCONS_00071983|Name=TCONS_00071983|organism=Clytia hemisphaerica|type=transcript|length=3304bp
agatttcttataaaaaaaagctatCATTTATTTAGGATTGTCATAACGAA
CATAATTTTAATTGCAAATACACGGGAAATAAATTACTATTCCTTTTGTC
TCCCATTTTGCAATTAACGCATTTTTCCTATTGTGTTTTGAAACTACTTT
TTTAATATTCATATGAATGACGTATTTTTGGTTATAATTATGCTATAATG
AGCTGAATAGATCATTCATTACAACACATGCGGGATGGGTGGATGGAAAA
TGAACATTGGATGATGAAGTGGTTTGAAGCAGGAGAGCGTTTTgactcaa
aataaacaacaaaacaaaaaaacaacaacaaactaaTACAATCATGAATA
CAATGATAATTCTTACCATTGCTACAATCTTCGTGACCAAAACATTTGGT
TGTGAGCTAACTCTTGGACAGGATTCTGCATTATGCCAAGCAATAGAAGC
TGATGTTACCAAGGTATCCGCCCAAGGTGCTACAGCTGTCAGTGGAGTTT
GCAGTTGTGATGCTGACAAAGCCAAAGATGCCTGCGATGAACTACAAACA
CAAAAAAGTTCAGGAGAATATAAATTTGAACCAGTTTGTGAAAAGATCAA
ATTGGTCCTCCCTGATCTTATTAAGGCTGCACTTGATTGCAACGATCAAG
ACGCACTCAAGAATTCTTACGCCAAAGTTGCTCAATGTAATGCTGAAAAT
GCTGCATCATCTTCTTCAAATACAATGATGGTGATGGAAGCGTCTACAAC
TCAGATGCTTGATGCTTCATCAATGATGATCAAAGCCTCTTCATCAGCAA
ATGAAATGCCAGCAATGTCAACATCCATGGATAATGCAATGATGTCATCA
GCAATGGTTGAAAATATGAATTCAACAATGACAGATATGATGGCTTCAAC
CAGTAAAATGGAAATTTCAGCTTCGAGCTCAATGGCCATGAATGGAACTA
GTTCATCAGTTGTTCCAGGTGCTGCAAATTCAATCACATTCACACATTCT
GTATTGGTGATCACAGCTCTGGTAGCAATGTTGGCTTCATTGATGTAAAT
ATATGATTAAAAAACACTCTTATTCAGTGATCGATTCTTCTCTTAAATAA
TCTTTCAACgaattaaaagaacaaattttcgGACAATATTGGCCATTTAA
ATATGTTGTAGATTCTAGATAAAAAACGCCATAAGATTGTAATAAAGACA
CAGACTCAGAATATTATTGCTGTGCAAGGGCAACAGAGAAGTTTCAATTG
GAGAAAATCTCTGGAAttaattttatctttttagaagacaaagttatttt
taaatatttacatcataaattttgaaactttacaCAGAAAAATTATTGTA
Gacgtattttatattttaattttgaataaaaacaaaattttctttgatct
taCAATTTTGTTATATGCTTGTGTATTTACTATAGTTTATAAAGTCCCAA
TTTTTATGATAGTCAATATTGCTACGAAGCAATAAAAGCAGTAAAAGCAG
TAAAACCATTGGATTTCTATTAACtatggataaaatgaaaggTGGAATAT
ATAATctctcttttttaatgatttagaCAACCCGTGTCATACAGACCCGG
GTGGACCCAACAGAAAATTTACCCAAGATTCTCATTCAGGCATttaattt
tagccccactgagagattcccattgggatttcgatagaaacaTCCCCACT
CTGAGAACAAGTTCCAACACGCGGATTTAAGACAGGGTTTCAAAAGTCTA
TAGTGAAAAAAGCTATTTAGATTTTCATGGTTATAATATTTGAGAGCTTA
cgaatatttctttaaaaacgCCTTCTTTGTATATTTGCATGATTGATTTG
ACAAATATTTCAATGATACACTCCTGTCTGACAACCCTGGTATAATTTTT
CATACAGCGgggataaattttttctttctggaAATCACAATGGaggtaga
aattctattgttctcagctTTAAAAACCCAGTGCGGGGATGATTTTGGAG
CAAAAAGTTATACCCTTCATGGCTacacattgaatttcgaatgggggtga
aatcaaagtcaatttcttatTGAGGGTTAAAACTTCCAGAGGCGCGCGGG
TGCAGCAGGCGTTTAATAATCGTACTAGAACATTTCTCCGGTTTAAAAAA
GACAGAAAGGGGTAGGAATATAGCACAGCTTCTTATCAAGTGTCCCTTTC
TACCCAGCtgacacaacgtcgtttcagcgttcatctaacattaaatggac
gttgtgtgtgccagctgggaacctTTGATAAGCACCAGTTAGAGTCGTTA
TGTAAAACTGATTTGAAATATACAGTCGACGCtctttaatttgattttca
agggcAATTTGATTTTCATCCAACAAGGAAGCGTAAGAACAAGTAAAGTA
TTGTCTATAAGAGTtttttgttgacggtgactttcaatattatcgaatac
cGGAGCGTATTGAATTAGTAAAACATCGAATTAAAGGCGCTAGCTGTAGT
TCATAAAAGATTTCCCACTTGTAAAATTAGGTATTTATTTTATGGTATCC
TTTCAAATGGTCCCTTCCTAACCTTCCATAAACACCATTAAATGTATTCA
CTATACGAAACATGAAACAGTCATAAAGAAAATGGCGACCAAAAACATTA
CAAATATTGATGTCCGATTTTTAGTGGCACCATTtttaattgatgacgtc
attgctACTGTAGTTGAAGTAGATGGTGATATTACGTTTCCTTGTTCATC
AAGTGTCTTTGTAACGGAATAAACAAAGGATGTTGTTTCCATGGTAACTG
GACGTGTTCTGTTTCTATTACAAATTGTCGTCAAGTCATATAAATTTTTC
ATAGAAGCCCAACTCTCACATGGTAAGCGTGTAGTCACTATATTATCATC
TTTCAAAACACTTTTCTTCATTTGAATACAAATTTGCGTGAAATCGTATT
GTCCTGTCGAGTTTAAGAGCTCACAAACAGATTTTCCTTTCAAGCAATTA
CATTCTGTCATATCTGGTTCATATCCTAATAGCAAATGAATTATATCCAA
TTTGATTTTATCGCAAACTTGGGTTATGTTTAAAATACATCCTTCTTGTT
GTTTCGATGTCGGCGTCGGTGACGGTATCGTTGTCGTTATTGGCAAAAGT
GACGGTGTCGGTATTAATGTTTGTGACGATATCAGTGTCGTTGAATGAGT
TTTGGTTTCATACAGAATTGACATAAATACCACAATCCAAAATACCATTT
TGGGTTTCATTTTTGTACCATAAGCTTTTATAAAATTAATACACTGCATT
GGCC
Run BLAST on NCBI

transcript from alignment at scaffold_66:96451..100425+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071983 ID=TCONS_00071983|Name=TCONS_00071983|organism=Clytia hemisphaerica|type=transcript|length=3975bp|location=Sequence derived from alignment at scaffold_66:96451..100425+ (Clytia hemisphaerica)
agatttcttataaaaaaaagctatCATTTATTTAGGATTGTCATAACGAA
CATAATTTTAATTGCAAATACACGGGAAATAAATTACTATTCCTTTTGTC
TCCCATTTTGCAATTAACGCATTTTTCCTATTGTGTTTTGAAACTACTTT
TTTAATATTCATATGAATGACGTATTTTTGGTTATAATTATGCTATAATG
AGCTGAATAGATCATTCATTACAACACATGCGGGATGGGTGGATGGAAAA
TGAACATTGGATGATGAAGTGGTTTGAAGCAGGAGAGCGTTTTGTGAGTG
AAAGATACATAATTTCTAATAGTGAGGTGAAGTTCTTTAAAAGGGAAAAC
TTTGCCGGGGGAGATGGGAAAAGTCACGAAATATTTGATATAGTGACGAA
GTATCAATTCAAAGGAAGTATCgacaaaaactttttgacgaaGATTGGGC
GAACATTTCCTCTTTTAGCTATACAGGTATAAACACGAAGATTAAGGGAA
AAGAAATTAGACTAGTGTATTCGAACCAATCAGGTTTTGTGTCTTCGCTA
GCTATTTACATCAGTGCTTTTGTCTCAATAATTTGATCTACCAGGGACCA
AATGCTTCGTACCCTAGAATTAACTTCACTTTCTGAGAgtttgaaattta
ttgaatgaataaagaaaacatttttattttaaaacataGTTTGAAATGTT
AAGCTGGATGATTTCGATTCATATCATGGCATATTCTCATACACTGTGTT
CCACTTTTTCAAGACAATCTGTAAATTCTATCGGAATGAGGGACGCAAAA
ggtgcatttaaaaaaattattattttcagaTTTGAATATAATTTACTGAC
AATccaaaaaaatgatgattttgtcTAGTGGAAAAACGATGCTGTAGCTT
CTGCACTGAAGTTTGATAGCTGTCATGCAATACCCcttaattttattcat
ttatttattttcaggactcaaaataaacaacaaaacaaaaaaacaacaac
aaactaaTACAATCATGAATACAATGATAATTCTTACCATTGCTACAATC
TTCGTGACCAAAACATTTGGTTGTGAGCTAACTCTTGGACAGGATTCTGC
ATTATGCCAAGCAATAGAAGCTGATGTTACCAAGGTATCCGCCCAAGGTG
CTACAGCTGTCAGTGGAGTTTGCAGTTGTGATGCTGACAAAGCCAAAGAT
GCCTGCGATGAACTACAAACACAAAAAAGTTCAGGAGAATATAAATTTGA
ACCAGTTTGTGAAAAGATCAAATTGGTCCTCCCTGATCTTATTAAGGCTG
CACTTGATTGCAACGATCAAGACGCACTCAAGAATTCTTACGCCAAAGTT
GCTCAATGTAATGCTGAAAATGCTGCATCATCTTCTTCAAATACAATGAT
GGTGATGGAAGCGTCTACAACTCAGATGCTTGATGCTTCATCAATGATGA
TCAAAGCCTCTTCATCAGCAAATGAAATGCCAGCAATGTCAACATCCATG
GATAATGCAATGATGTCATCAGCAATGGTTGAAAATATGAATTCAACAAT
GACAGATATGATGGCTTCAACCAGTAAAATGGAAATTTCAGCTTCGAGCT
CAATGGCCATGAATGGAACTAGTTCATCAGTTGTTCCAGGTGCTGCAAAT
TCAATCACATTCACACATTCTGTATTGGTGATCACAGCTCTGGTAGCAAT
GTTGGCTTCATTGATGTAAATATATGATTAAAAAACACTCTTATTCAGTG
ATCGATTCTTCTCTTAAATAATCTTTCAACgaattaaaagaacaaatttt
cgGACAATATTGGCCATTTAAATATGTTGTAGATTCTAGATAAAAAACGC
CATAAGATTGTAATAAAGACACAGACTCAGAATATTATTGCTGTGCAAGG
GCAACAGAGAAGTTTCAATTGGAGAAAATCTCTGGAAttaattttatctt
tttagaagacaaagttatttttaaatatttacatcataaattttgaaact
ttacaCAGAAAAATTATTGTAGacgtattttatattttaattttgaataa
aaacaaaattttctttgatcttaCAATTTTGTTATATGCTTGTGTATTTA
CTATAGTTTATAAAGTCCCAATTTTTATGATAGTCAATATTGCTACGAAG
CAATAAAAGCAGTAAAAGCAGTAAAACCATTGGATTTCTATTAACtatgg
ataaaatgaaaggTGGAATATATAATctctcttttttaatgatttagaCA
ACCCGTGTCATACAGACCCGGGTGGACCCAACAGAAAATTTACCCAAGAT
TCTCATTCAGGCATttaattttagccccactgagagattcccattgggat
ttcgatagaaacaTCCCCACTCTGAGAACAAGTTCCAACACGCGGATTTA
AGACAGGGTTTCAAAAGTCTATAGTGAAAAAAGCTATTTAGATTTTCATG
GTTATAATATTTGAGAGCTTAcgaatatttctttaaaaacgCCTTCTTTG
TATATTTGCATGATTGATTTGACAAATATTTCAATGATACACTCCTGTCT
GACAACCCTGGTATAATTTTTCATACAGCGgggataaattttttctttct
ggaAATCACAATGGaggtagaaattctattgttctcagctTTAAAAACCC
AGTGCGGGGATGATTTTGGAGCAAAAAGTTATACCCTTCATGGCTacaca
ttgaatttcgaatgggggtgaaatcaaagtcaatttcttatTGAGGGTTA
AAACTTCCAGAGGCGCGCGGGTGCAGCAGGCGTTTAATAATCGTACTAGA
ACATTTCTCCGGTTTAAAAAAGACAGAAAGGGGTAGGAATATAGCACAGC
TTCTTATCAAGTGTCCCTTTCTACCCAGCtgacacaacgtcgtttcagcg
ttcatctaacattaaatggacgttgtgtgtgccagctgggaacctTTGAT
AAGCACCAGTTAGAGTCGTTATGTAAAACTGATTTGAAATATACAGTCGA
CGCtctttaatttgattttcaagggcAATTTGATTTTCATCCAACAAGGA
AGCGTAAGAACAAGTAAAGTATTGTCTATAAGAGTtttttgttgacggtg
actttcaatattatcgaataccGGAGCGTATTGAATTAGTAAAACATCGA
ATTAAAGGCGCTAGCTGTAGTTCATAAAAGATTTCCCACTTGTAAAATTA
GGTATTTATTTTATGGTATCCTTTCAAATGGTCCCTTCCTAACCTTCCAT
AAACACCATTAAATGTATTCACTATACGAAACATGAAACAGTCATAAAGA
AAATGGCGACCAAAAACATTACAAATATTGATGTCCGATTTTTAGTGGCA
CCATTtttaattgatgacgtcattgctACTGTAGTTGAAGTAGATGGTGA
TATTACGTTTCCTTGTTCATCAAGTGTCTTTGTAACGGAATAAACAAAGG
ATGTTGTTTCCATGGTAACTGGACGTGTTCTGTTTCTATTACAAATTGTC
GTCAAGTCATATAAATTTTTCATAGAAGCCCAACTCTCACATGGTAAGCG
TGTAGTCACTATATTATCATCTTTCAAAACACTTTTCTTCATTTGAATAC
AAATTTGCGTGAAATCGTATTGTCCTGTCGAGTTTAAGAGCTCACAAACA
GATTTTCCTTTCAAGCAATTACATTCTGTCATATCTGGTTCATATCCTAA
TAGCAAATGAATTATATCCAATTTGATTTTATCGCAAACTTGGGTTATGT
TTAAAATACATCCTTCTTGTTGTTTCGATGTCGGCGTCGGTGACGGTATC
GTTGTCGTTATTGGCAAAAGTGACGGTGTCGGTATTAATGTTTGTGACGA
TATCAGTGTCGTTGAATGAGTTTTGGTTTCATACAGAATTGACATAAATA
CCACAATCCAAAATACCATTTTGGGTTTCATTTTTGTACCATAAGCTTTT
ATAAAATTAATACACTGCATTGGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044691XLOC_044691Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071983-exon-scaffold_66-1491911889:96451..96743TCONS_00071983-exon-scaffold_66-1491911889:96451..96743Clytia hemisphaericaexon
TCONS_00071983-exon-scaffold_66-1510915933:96451..96743TCONS_00071983-exon-scaffold_66-1510915933:96451..96743Clytia hemisphaericaexon
TCONS_00071983-exon-scaffold_66-1575043694:96451..96743TCONS_00071983-exon-scaffold_66-1575043694:96451..96743Clytia hemisphaericaexon
TCONS_00071983-exon-scaffold_66-1491911889:97415..100425TCONS_00071983-exon-scaffold_66-1491911889:97415..100425Clytia hemisphaericaexon
TCONS_00071983-exon-scaffold_66-1510915933:97415..100425TCONS_00071983-exon-scaffold_66-1510915933:97415..100425Clytia hemisphaericaexon
TCONS_00071983-exon-scaffold_66-1575043694:97415..100425TCONS_00071983-exon-scaffold_66-1575043694:97415..100425Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_66supercontigscaffold_66:96451..100425 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.252183	0	0	0	0.552043	1.84227	2.45604	5.88746	0	0.899378	0.365465	0.11238	6.27165	3.87102	4.43595	7.12123	2.00731	5.66639	3.78322	15.2587	0.90452	1.07021	2.01497	1.42992	3.07657	6.48535	79.1844	75.5907	2.26493	0.452654
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071983 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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