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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071982 ID=TCONS_00071982|Name=TCONS_00071982|organism=Clytia hemisphaerica|type=transcript|length=3498bpRun BLAST on NCBI protein sequence of TCONS_00071982-protein >TCONS_00071982-protein ID=TCONS_00071982-protein|Name=TCONS_00071982-protein|organism=Clytia hemisphaerica|type=polypeptide|length=623bp MYCCKVFQRQNPKILSSTLKTIVSSQKWSHHQSSLNDTIPKQTTRSKVTGRun BLAST on NCBI transcript from alignment at scaffold_66:78792..87964+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071982 ID=TCONS_00071982|Name=TCONS_00071982|organism=Clytia hemisphaerica|type=transcript|length=9173bp|location=Sequence derived from alignment at scaffold_66:78792..87964+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_66:78792..87964+ >TCONS_00071982 ID=TCONS_00071982|Name=TCONS_00071982|organism=Clytia hemisphaerica|type=CDS|length=18720bp|location=Sequence derived from alignment at scaffold_66:78792..87964+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00071982 vs. Swiss-Prot (Human)
Match: PROD (Proline dehydrogenase 1, mitochondrial OS=Homo sapiens GN=PRODH PE=1 SV=3) HSP 1 Score: 453.751 bits (1166), Expect = 6.054e-145 Identity = 246/549 (44.81%), Postives = 342/549 (62.30%), Query Frame = 2
Query: 728 SGNAAVKLPKSASKTESNLEFEDF---QKAFMGKSTREILRALMVYKLCSFDFLVERNKVLIKISRTLLGKRGFDFLMKNSFYGHFVAGETQEEIKSYLSLMKAYGVGAILDYAVEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXFKVHMDFADRRENVISARTYFYEGEEKCDENMEVFLKCIDTTSNTSENGFAAIKVTALGRPVLLLRLSQILNQTQVYFDLLAENKGNC---ITERSFAEDAFEHGLKDLGVDMTSAEVKQVFDIIDTANDGKIDIHEWHSFLTPRLKLARLFRAKPITKGEKGGEVLATLTDAELKEMENMTDRLLTVAQRAKDKNVRLMVDAEQTYFQPAISRITLEAMRFFNRDKPIIFNTYQCYLKDTPAHLRIDMELARREGFKFACKLVRGAYMEQERARAEAHGYADPIHDNKENTHACYNDMLFMMLEEVRDRG-ANVMAASHNEASVRHAIKTMQEFGIKRTDDNVFFGQLLGMCDAITYALGGAGYSAYKYVPYGPVEDVIPYLSRRAMENKSVMLGVMKE 2350
+G AAV SA+ + DF Q+A+ + T E+ R+L+V +LC++ L+ R++ L+ +SR LLG+R F+ LMK +FYGHFVAGE QE I+ L +A+GV AILDY VE D+ E + + N +++ H F DRR VISARTYFY E KCD +ME FL+CI+ + S++GF AIK+TALGRP LL+ S++L + + +F +A +G + + + LG+ + AE++ F G +D+ +W S + R KL++ P + + +L+ T+ E +M M R+ +A++A + VRLMVDAEQTYFQPAISR+TLE R FN +KP+IFNTYQCYLKD ++ +D+ELARREG+ F KLVRGAY+ QERARA GY DPI+ E T+A Y+ L +LEE++ A VM ASHNE +VR A++ M+E G+ D V+FGQLLGMCD I++ LG AGY YKYVPYGPV +V+PYLSRRA+EN S+M G +E
Sbjct: 32 AGPAAVPGGGSATAVRPPVPAVDFGNAQEAYRSRRTWELARSLLVLRLCAWPALLARHEQLLYVSRKLLGQRLFNKLMKMTFYGHFVAGEDQESIQPLLRHYRAFGVSAILDYGVEEDLSPEEAEHKEMESCTSAAERDGSGTNKRDKQYQAHRAFGDRRNGVISARTYFYANEAKCDSHMETFLRCIEASGRVSDDGFIAIKLTALGRPQFLLQFSEVLAKWRCFFHQMAVEQGQAGLAAMDTKLEVAVLQESVAKLGI-ASRAEIEDWFTAETLGVSGTMDLLDWSSLIDSRTKLSKHL-VVPNAQTGQLEPLLSRFTEEEELQMTRMLQRMDVLAKKATEMGVRLMVDAEQTYFQPAISRLTLEMQRKFNVEKPLIFNTYQCYLKDAYDNVTLDVELARREGWCFGAKLVRGAYLAQERARAAEIGYEDPINPTYEATNAMYHRCLDYVLEELKHNAKAKVMVASHNEDTVRFALRRMEELGLHPADHQVYFGQLLGMCDQISFPLGQAGYPVYKYVPYGPVMEVLPYLSRRALENSSLMKGTHRE 578 The following BLAST results are available for this feature:
BLAST of TCONS_00071982 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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