TCONS_00071981 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071981
Unique NameTCONS_00071981
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1671

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071981 ID=TCONS_00071981|Name=TCONS_00071981|organism=Clytia hemisphaerica|type=transcript|length=1671bp
TGGATTTTTAAGTAAAGTGGTTTTTGTTATTATATTAGATGAAATTTTAG
CCCTCAGTCTCGAGTTTTTCCtgtttgatttaaatttttaaacataTACA
ACAGAAGATTCTAAAGCAGAAATGGATGCTCATTTCTTTGTGGCGTTGAT
GGACTATGACCCAGGCCAACATCGCAAAGATGATATCCGTTTAACCAAAG
GAGACCTTGTGCAACTCATCTCTTCCGACTCTGGATGGCTGTTTGTGCTG
TTATTGAAGGATGATTTCGATAAACAAGGCTGGGTTCCTGATACATATCT
AGAACGCAAACTTGATATTGATGTGGGGTCTATAGCTGCTCACACCGAAC
GTGGTGGTTCACCCAAACCAAAACCACGCCCCCGCCCTGCGCCACGACCA
CGCACGAAACCACAAGAAACACCTCAAACGAATCTTCCAAAACGTCCCGC
GCCACCAAAGCCTGACGAACGGGACGCCCTTCCACCCTCGCCACCACCAG
TTCCCGCTCAACAGCCATACGAAGAAGATTTGTATGACGAACCGGAAATG
ACTCTGCGCTCAGTTTATGATGCAGAGCCATGGTATTTTGGTAACATTTC
CAGAGCTGACTGTGAAAGACAATTATCCACGTATGGCCGCCAACAAGAGT
TCTTAATCAGAGACAGTCAAAGGgcgAAGGGCTCTTATGCATTATCCGTC
AAATATTGTTATAGGATCCGCCATTTCCCGATCGAAGCCGTAGACGGGGG
TAAGCTACTCATTGGAAAACTGAGTTTTAATAATTTGATGGACATTGTGA
TTTATTATCAGAAAAATCCATTGTTTTATTCTGAACATAAAGAACCGATA
AGTCTTGGTAGTGCTTTTGTGAAAGACAGGACCGGTCAGAAAAAATGAGT
TATGTACAAGGTGGTGTATGATGATGTGATTCAAGGAGTCGATTCAAGGA
GTTGAATTTCGCTAGCCTGAAATACGATGATCGCTCGTGAAGAGGCTACA
TGTAATATAACATGAAATTTTTAtgattcaaaatttaaagtatGTTACAC
GGAGATATGAATTTGATTCGGAATAATTTATTTGGAAATTGAATTATTGT
CAATGGAATTTTATGATGGCTATTTTGATGAGAATTATAACGTTTTGATT
TACGATGGTTGGATCATTAAgaattttaaacattattttgaTAATGATTT
CAAAGAACTTTGGACAACGTCGTCCGCGAATTACTCAATggaactggtca
aaatacaaagtaCAAACGTCAAAACTTCAGCGTTTTGAATACTTAACTCT
GATTGTAAGGTTGatatacaaacaaaatcatGTCAAACAGATGCCTAATT
TAAAACCTGGAAGGATCTCTACTGGAATAAGAAACCACGCGGCAATTGTC
AATTTTATTGGTAGAATTGGCCGTTGATAGAGAGAACACAAAAAACAGTA
CAGTCGAAACAAGGGTTGTTTGTTTATGGTTTGTTTCTTTTCTGTTCTTG
TTTAGAGTTTATCAAAGCCGTTCTCCACTTCTGCGTGCTGCGATTGCACT
TATTCGAGAAAAGCTTCTACGCTATTGCtcaaaggaaaaataaaacaatt
ccattggcgcgacCTGACGTAACGgtctaaaaaaagttgaaatgtagtCA
ACTTTGTTTTCAACctcgcgc
Run BLAST on NCBI

transcript from alignment at scaffold_66:62208..67337+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071981 ID=TCONS_00071981|Name=TCONS_00071981|organism=Clytia hemisphaerica|type=transcript|length=5130bp|location=Sequence derived from alignment at scaffold_66:62208..67337+ (Clytia hemisphaerica)
TGGATTTTTAAGTAAAGTGGTTTTTGTTATTATATTAGATGAAATTTTAG
CCCTCAGTCTCGAGTTTTTCCtgtttgatttaaatttttaaacataTACA
ACAGAAGATTCTAAAGCAGAAATGGTACGGTTATCTTCTATATTTTGGTA
TAAATATTAACAGGGGTTGGTCTAGGTGATATACAGGGTGTTACTTCTGC
ATTCCGCAAATTTAACAGAATGGGCTGGGTTAATTGTCGTGTCTCAGAAA
TATTTCTGGAGGGCCAAAACTTGACTATTTTTTTTCCTTAATATATATAC
TATTTAGTCCTGGTAaaacttttattctatttgtacgCTTTGTGTCGGGA
TTCTTTCTTCACATTTGGatgaaatattcttcaaaatttaCGGCCTTGTC
ACAACTTTGACACACCTTAGCTTGAGCTATGACGTCACTAAATGAAAGAT
TTTACCTGTCATTTGAAAATGCTTCTAATCTTCTGTAACGGAAATTTGAC
AATTTATGATATGTGTTAATGGCGGTATAAAGTGTGTTTTCCTCCGCATC
GATGTTAAATTGTTTTACATAGGATATTACTTCTTTATTATCTTTGCTAT
GGCACTGTTTCTTAAGTTCCTTCTGATACAATAACTTCTACTGATTTTCA
AAGTTCTGACAGGTCTTTGCACCGTTTTGATTGactgatattttgtaatt
caaATCTCTCATTGCACTTGTTCTTCAAGTGTCGTTCGGGTGTCAAGGTA
AACGCGATAAACCGGCTACTTGCGTCTATAAAGAGTCGGAATGTTACCTA
CTCCCCGTCGGTAGGACCTATATTTgagcatagtcattataaaaaaatcc
gGTCNAAGTATCTaaaatcatagtcattataaaaaaatccgGTCttgttt
ttttggctttttgttcaattttcttttgttacaaacaaaagacaagttgc
gatttgcatactttttaatcacgttaccaaaatctcctcttaGGATTGGT
CTATTCtataatcacatgatcaaaaagttcaattttggtacgtaagctcc
atcttttaacaataaaaagagacaaaaatcttccagaccagtgtttttac
aATGACTATGATTTTAGATACTTGAGTGTATAAAATCTCGACAAGCCTCG
CCTGACGAATTTACTGACCCAATATAATGTACCGCTCAAACTAATAATTA
TCGGTCTCCCTTGACAGGATGCTCATTTCTTTGTGGCGTTAATGGATTAT
GACCCGGGCCAACATCGCAAAGATGATATATATGTACAATATATGTACTG
CTAaaagaccgtgtaactaataatCGTCTGTCTTTCTTTTTTAGGATGCT
CATTTCTTTGTGGCGTTGATGGACTATGACCCAGGCCAACATCGCAAAGA
TGATATCCGTTTAACCAAAGGAGACCTTGTGCAACTCATCTCTTCCGACT
CTGGATGGCTGTTTGTGCTGTTATTGAAGGATGATTTCGATAAACAAGGC
TGGGTTCCTGATACATATCTAGAACGCAAACTTGATATTGATGTGGGGTC
TATAGCTGGTAAGAATAAAGCTCTCGTTTTATTTTTGACTGACTTTAAAA
TCCGCAAATACCTCCCTCAAGTTCCTTGGTCGTTATGTCCTTGCTTTGCA
TACCAGACGCACCACAAACCTTTTGACTTCGGAATTTAAGGTTTGTAATT
CTTTgggaaaaaaaagtttcattttataACTGGTAAAGATTTTCTCATAA
TGAAGCATCTGAAGACTGCACagtaaatttcttttctttacgGAAGAATC
TAAGAGACAGATCTACTTAATTGGCTTAAGATGTAAATTGATCGGTTTTT
CTGTGTTATAATTAAAAGAGATTTAAAGAgaattatttttgataactcgt
aaatttttttctgaatttgaaaaatggttGTACCTTTCTATGGATTTTTA
CAACATGAAATTTAACgccatgaatatcatgaatgttCACTTTTAGCTCA
CACCGAACGTGGTGGTTCACCCAAACCAAAACCACGCCCCCGCCCTGCGC
CACGACCACGCACGAAACCACAAGAAACACCTCAAACGAATCTTCCAAAA
CGTCCCGCGCCACCAAAGCCTGACGAACGGGACGCCCTTCCACCCTCGCC
ACCACCAGTTCCCGCTCAACAGCCATACGAAGAAGATTTGTATGACGAAC
CGGAAATGACTCTGCGCTCAGGTAAGACCTAGCTATAATTGATGAACCTT
TCAGCCTTGAAAATCAAACTCAtctcaaaaaaggaaaaactgcATCATTC
AGTCCCGCAAGTGTTTTACACTATTTACGTTACTTCTCTTACGTAGGGAC
ATTGTTATATAATTGAAATCAGAAGATTTTTAGAAGCCAATTATTTGTTT
CTATTCTCTGAGATCTTCAAGATAATCGAGAGCGTCCTCTACGCTCTTAG
ACATTTCCATCATTTCGTTTCGGGTATTTATATATAAGTAAATTTTGTCG
CCCGACACAAAAATTGGACGTGATTGTTCGGGGGGGGGGAGTCTGCTGTA
TTACACACTTTCATCCTCTTTTTTTTCAAGAGTGTTAcatgtaaaatttc
aattcCGCTTTCTATTTCTAGTTTATGATGCAGAGCCATGGTATTTTGGT
AACATTTCCAGAGCTGACTGTGAAAGACAATTATCCACGGTATGTACCTG
CCCCTCGGCAAGTTACTATTTGCTTTGATGTAAATTATGAAAACATCAAA
AGAGCTAGATATCCAAGatttcagacaaaaaataaCTTCATTTATGTGTA
TACCTAGGGAGACATTCGTCACACACGCATTGACAGACGGTATAATTGTA
GGCTGGTGACATTCACTAATgaattcgtgctccttatactacctgcAGTT
tcgtagaggtctgcgattatGACTAAAATATGTTTTACAGACCCGACGGA
ACAACTGTTAAGgtgggaggctgaaggctcaaaatgagataaaattcgtt
AGGAATTTGAGgagaaaatctcatttgctcaaaagtggggaggctaaaGT
CTCCCCattctccccgcttccgccgggcctgtttGACGACCATTCAAATG
TACGCACATAGTCTTTGCAATAAAGCTACTCAAAGAGATTAATTCTTCTC
TTATGACTCCAACCTACAGCAGTATCGGCCCTAAAATCTGTTCACTGATT
CCATTTTAGTATGGCCGCCAACAAGAGTTCTTAATCAGAGACAGTCAAAG
GGTGAGTAATGGTTTTATTTGTATactcatttttttatgagaacacgAGT
TTGAATGTTAGCAAACCCCTAATAACATATCAAGTACAAATTAAGCGCTA
GATTCGAGAAACGGTTAAGAAAATACTGATTCTAAGCCCTTTTTTGAGCC
ATCGATGAATGAAAAGAGGAGTCACataatactttaggcgtacaaacttt
cgcgagcagaaactttcgcgaggtcgaaaaatcgcgaaatttgcgagcat
aaactttcgcgaatcgttggataaaaattgccttaaaagtgaaaaatatt
ccttaaatcgcgaattgccctgttaaaaattttcaacaacatTTACTTTG
GCGAAAAAgcccaaaattcgcgaaaatcgttAAGTTtttcctcgcaaaag
tttgtacgcctaataAACGCATTTTATACTCAAGTAACAAGGAGATTTTT
TAACCGAATTTcttacttttcaatttttcaggcgAAGGGCTCTTATGCAT
TATCCGTCAAATATTGTTATAGGTGAGCGgaagaaaatcatttttgcgaC
ATGTAAATTATTATGTTATAACACAACCTCAGAAAAAGAGCTTAACAGAG
AGGGGCGTCAAAGGTGTCGTCATTCCTTCGAATGTATGCAATTATACATA
CCGTCaactctctcttattcgaacctctatcattcgaatttttctgtaaa
tCGAACTAAGATATTGGTCTATACAACTGGCAAGTGATTTGAACTACTCT
CTggaattcgaatctttctgtaattcgaatgaaattgaagatcgaataag
agagagtcaactgtactgCGATCTCTTTTATAAGACACCCCCTTTCAAGT
TCTTCCAGATTTGAACATCTTCAggtaaattttaacaaaatgctctaaaa
aaaatttttcctttatGTTTTAGGATCCGCCATTTCCCGATCGAAGCCGT
AGACGGGGGTAAGCTACTCATTGGAAAACTGAGTTTTAATAATTTGATGG
ACATTGTGATTTATTATCAGAAAAATCCATTGTTTTATTCTGAACATAAA
GAACCGATAAGTCTTGGTAGTGCTTTTGTGAAAGACAGGACCGGTCAGAA
AAAATGAGTTATGTACAAGGTGGTGTATGATGATGTGATTCAAGGAGTCG
ATTCAAGGAGTTGAATTTCGCTAGCCTGAAATACGATGATCGCTCGTGAA
GAGGCTACATGTAATATAACATGAAATTTTTAtgattcaaaatttaaagt
atGTTACACGGAGATATGAATTTGATTCGGAATAATTTATTTGGAAATTG
AATTATTGTCAATGGAATTTTATGATGGCTATTTTGATGAGAATTATAAC
GTTTTGATTTACGATGGTTGGATCATTAAgaattttaaacattattttga
TAATGATTTCAAAGAACTTTGGACAACGTCGTCCGCGAATTACTCAATgg
aactggtcaaaatacaaagtaCAAACGTCAAAACTTCAGCGTTTTGAATA
CTTAACTCTGATTGTAAGGTTGatatacaaacaaaatcatGTCAAACAGA
TGCCTAATTTAAAACCTGGAAGGATCTCTACTGGAATAAGAAACCACGCG
GCAATTGTCAATTTTATTGGTAGAATTGGCCGTTGATAGAGAGAACACAA
AAAACAGTACAGTCGAAACAAGGGTTGTTTGTTTATGGTTTGTTTCTTTT
CTGTTCTTGTTTAGAGTTTATCAAAGCCGTTCTCCACTTCTGCGTGCTGC
GATTGCACTTATTCGAGAAAAGCTTCTACGCTATTGCtcaaaggaaaaat
aaaacaattccattggcgcgacCTGACGTAACGgtctaaaaaaagttgaa
atgtagtCAACTTTGTTTTCAACctcgcgc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044689XLOC_044689Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071981-exon-scaffold_66-1491911889:62208..62331TCONS_00071981-exon-scaffold_66-1491911889:62208..62331Clytia hemisphaericaexon
TCONS_00071981-exon-scaffold_66-1510915933:62208..62331TCONS_00071981-exon-scaffold_66-1510915933:62208..62331Clytia hemisphaericaexon
TCONS_00071981-exon-scaffold_66-1575043694:62208..62331TCONS_00071981-exon-scaffold_66-1575043694:62208..62331Clytia hemisphaericaexon
TCONS_00071981-exon-scaffold_66-1491911889:63552..63765TCONS_00071981-exon-scaffold_66-1491911889:63552..63765Clytia hemisphaericaexon
TCONS_00071981-exon-scaffold_66-1510915933:63552..63765TCONS_00071981-exon-scaffold_66-1510915933:63552..63765Clytia hemisphaericaexon
TCONS_00071981-exon-scaffold_66-1575043694:63552..63765TCONS_00071981-exon-scaffold_66-1575043694:63552..63765Clytia hemisphaericaexon
TCONS_00071981-exon-scaffold_66-1491911889:64204..64428TCONS_00071981-exon-scaffold_66-1491911889:64204..64428Clytia hemisphaericaexon
TCONS_00071981-exon-scaffold_66-1510915933:64204..64428TCONS_00071981-exon-scaffold_66-1510915933:64204..64428Clytia hemisphaericaexon
TCONS_00071981-exon-scaffold_66-1575043694:64204..64428TCONS_00071981-exon-scaffold_66-1575043694:64204..64428Clytia hemisphaericaexon
TCONS_00071981-exon-scaffold_66-1491911889:64829..64896TCONS_00071981-exon-scaffold_66-1491911889:64829..64896Clytia hemisphaericaexon
TCONS_00071981-exon-scaffold_66-1510915933:64829..64896TCONS_00071981-exon-scaffold_66-1510915933:64829..64896Clytia hemisphaericaexon
TCONS_00071981-exon-scaffold_66-1575043694:64829..64896TCONS_00071981-exon-scaffold_66-1575043694:64829..64896Clytia hemisphaericaexon
TCONS_00071981-exon-scaffold_66-1491911889:65417..65458TCONS_00071981-exon-scaffold_66-1491911889:65417..65458Clytia hemisphaericaexon
TCONS_00071981-exon-scaffold_66-1510915933:65417..65458TCONS_00071981-exon-scaffold_66-1510915933:65417..65458Clytia hemisphaericaexon
TCONS_00071981-exon-scaffold_66-1575043694:65417..65458TCONS_00071981-exon-scaffold_66-1575043694:65417..65458Clytia hemisphaericaexon
TCONS_00071981-exon-scaffold_66-1491911889:65939..65979TCONS_00071981-exon-scaffold_66-1491911889:65939..65979Clytia hemisphaericaexon
TCONS_00071981-exon-scaffold_66-1510915933:65939..65979TCONS_00071981-exon-scaffold_66-1510915933:65939..65979Clytia hemisphaericaexon
TCONS_00071981-exon-scaffold_66-1575043694:65939..65979TCONS_00071981-exon-scaffold_66-1575043694:65939..65979Clytia hemisphaericaexon
TCONS_00071981-exon-scaffold_66-1491911889:66381..67337TCONS_00071981-exon-scaffold_66-1491911889:66381..67337Clytia hemisphaericaexon
TCONS_00071981-exon-scaffold_66-1510915933:66381..67337TCONS_00071981-exon-scaffold_66-1510915933:66381..67337Clytia hemisphaericaexon
TCONS_00071981-exon-scaffold_66-1575043694:66381..67337TCONS_00071981-exon-scaffold_66-1575043694:66381..67337Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_66supercontigscaffold_66:62208..67337 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0817822	0	0	4.1572	2.04153	2.44573	2.47271	0.915851	1.28944	0.159478	0.810045	0.243607	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071981 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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