TCONS_00071972 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071972
Unique NameTCONS_00071972
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length734

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071972 ID=TCONS_00071972|Name=TCONS_00071972|organism=Clytia hemisphaerica|type=transcript|length=734bp
GTTCACGACTCCCACATCAAATTGACCATATCCTAATTCAAAAGAACGAT
TTCAAGCGATTCATCGATTGCGGTAATTATAATCCACTCATAAACAGCGA
TCATATTTCCGTTAGATGCAAAATCCGCCTTGTTGTTTCCTTTCGAAAAA
CTCAAACTCCTCGTCAGATCATATCCAAGCTAGACAGTTCAGTGTTATTA
GATCGTGATATCTCACAATCGTTCAATCAACAAGTTGTTCATCATTTCAA
CCGCTCTCCAAACGATACCAACTGTCATAATAAACTTTCTTACGCTATGA
AGAAAGCTGCAAAAGATATTCTCCCAAGGAAACCCCGTCCGCAACCCGAC
TGGTTCACCGCCAATGAGGACCGCTTATTAAAACTTATCGATATAAGAAA
CTCCGctttaaaagcaaaaataaaCCGCCCTACCCGACAATCTATCAAGA
ATCTACGCATTGCTCGAAAAAACTTATCTTCAGCTATAACGACTGCTAAA
GACAAATGGATCGTaagtaaaattgacgttttaaaTGATTCTGACGCATC
AAAAAAGGGAACTAAAATATGTTGGGACTCAATAAAATCGCTAAAACAAG
GACTTACAAAACCAAGGCAAGTCAACGAGAAAATGATGACCAAAAGCGAT
GGTACCAAATGTAAGTCTGCAGAAGAAAATGCAGAGGTGTTTAAAGTCCA
TTTCGAACAACTATACGACCGTAAACCAACTTTN
Run BLAST on NCBI

protein sequence of TCONS_00071972-protein

>TCONS_00071972-protein ID=TCONS_00071972-protein|Name=TCONS_00071972-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
SRLPHQIDHILIQKNDFKRFIDCGNYNPLINSDHISVRCKIRLVVSFRKT
QTPRQIISKLDSSVLLDRDISQSFNQQVVHHFNRSPNDTNCHNKLSYAMK
KAAKDILPRKPRPQPDWFTANEDRLLKLIDIRNSALKAKINRPTRQSIKN
LRIARKNLSSAITTAKDKWIVSKIDVLNDSDASKKGTKICWDSIKSLKQG
LTKPRQVNEKMMTKSDGTKCKSAEENAEVFKVHFEQLYDRKPTX
Run BLAST on NCBI

transcript from alignment at scaffold_65:354556..355289

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071972 ID=TCONS_00071972|Name=TCONS_00071972|organism=Clytia hemisphaerica|type=transcript|length=734bp|location=Sequence derived from alignment at scaffold_65:354556..355289 (Clytia hemisphaerica)
NAAAGTTGGTTTACGGTCGTATAGTTGTTCGAAATGGACTTTAAACACCT
CTGCATTTTCTTCTGCAGACTTACATTTGGTACCATCGCTTTTGGTCATC
ATTTTCTCGTTGACTTGCCTTGGTTTTGTAAGTCCTTGTTTTAGCGATTT
TATTGAGTCCCAACATATTTTAGTTCCCTTTTTTGATGCGTCAGAATCAt
ttaaaacgtcaattttacttACGATCCATTTGTCTTTAGCAGTCGTTATA
GCTGAAGATAAGTTTTTTCGAGCAATGCGTAGATTCTTGATAGATTGTCG
GGTAGGGCGGtttatttttgcttttaaagCGGAGTTTCTTATATCGATAA
GTTTTAATAAGCGGTCCTCATTGGCGGTGAACCAGTCGGGTTGCGGACGG
GGTTTCCTTGGGAGAATATCTTTTGCAGCTTTCTTCATAGCGTAAGAAAG
TTTATTATGACAGTTGGTATCGTTTGGAGAGCGGTTGAAATGATGAACAA
CTTGTTGATTGAACGATTGTGAGATATCACGATCTAATAACACTGAACTG
TCTAGCTTGGATATGATCTGACGAGGAGTTTGAGTTTTTCGAAAGGAAAC
AACAAGGCGGATTTTGCATCTAACGGAAATATGATCGCTGTTTATGAGTG
GATTATAATTACCGCAATCGATGAATCGCTTGAAATCGTTCTTTTGAATT
AGGATATGGTCAATTTGATGTGGGAGTCGTGAAC

Coding sequence (CDS) from alignment at scaffold_65:354556..355289

>TCONS_00071972 ID=TCONS_00071972|Name=TCONS_00071972|organism=Clytia hemisphaerica|type=CDS|length=732bp|location=Sequence derived from alignment at scaffold_65:354556..355289 (Clytia hemisphaerica)
NAAAGTTGGTTTACGGTCGTATAGTTGTTCGAAATGGACTTTAAACACCT
CTGCATTTTCTTCTGCAGACTTACATTTGGTACCATCGCTTTTGGTCATC
ATTTTCTCGTTGACTTGCCTTGGTTTTGTAAGTCCTTGTTTTAGCGATTT
TATTGAGTCCCAACATATTTTAGTTCCCTTTTTTGATGCGTCAGAATCAt
ttaaaacgtcaattttacttACGATCCATTTGTCTTTAGCAGTCGTTATA
GCTGAAGATAAGTTTTTTCGAGCAATGCGTAGATTCTTGATAGATTGTCG
GGTAGGGCGGtttatttttgcttttaaagCGGAGTTTCTTATATCGATAA
GTTTTAATAAGCGGTCCTCATTGGCGGTGAACCAGTCGGGTTGCGGACGG
GGTTTCCTTGGGAGAATATCTTTTGCAGCTTTCTTCATAGCGTAAGAAAG
TTTATTATGACAGTTGGTATCGTTTGGAGAGCGGTTGAAATGATGAACAA
CTTGTTGATTGAACGATTGTGAGATATCACGATCTAATAACACTGAACTG
TCTAGCTTGGATATGATCTGACGAGGAGTTTGAGTTTTTCGAAAGGAAAC
AACAAGGCGGATTTTGCATCTAACGGAAATATGATCGCTGTTTATGAGTG
GATTATAATTACCGCAATCGATGAATCGCTTGAAATCGTTCTTTTGAATT
AGGATATGGTCAATTTGATGTGGGAGTCGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044688XLOC_044688Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071972-exon-scaffold_65-1491911889:354556..355289TCONS_00071972-exon-scaffold_65-1491911889:354556..355289Clytia hemisphaericaexon
TCONS_00071972-exon-scaffold_65-1510915933:354556..355289TCONS_00071972-exon-scaffold_65-1510915933:354556..355289Clytia hemisphaericaexon
TCONS_00071972-exon-scaffold_65-1575043694:354556..355289TCONS_00071972-exon-scaffold_65-1575043694:354556..355289Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071972-proteinTCONS_00071972-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_65supercontigscaffold_65:354556..355289 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0675767	0	0.0765137	0	0.364524	0.576103	0.521283	0.406682	0.113891	0.282145	0.0684642	0.31504	1.39324	0.560086	0.153489	0.288255	0.558025	0.987927	4.23829	5.93848	2.22146	1.62532	0.774821	0.915752	0.798095	1.16555	0.185322	0	0	0.076418
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071972 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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