TCONS_00071970 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071970
Unique NameTCONS_00071970
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length369

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071970 ID=TCONS_00071970|Name=TCONS_00071970|organism=Clytia hemisphaerica|type=transcript|length=369bp
CATGAATTTTGTAGTAAATACCAACACAAATTACACTTTTTGTTGCTAAA
TTACTTTTATTCAACTGCATTATTTTGccagcaaaaaaaagaatttgaaa
ggcTGGATTGCTTTAATGCAGAATAAAGctgaatttgcaaaaaaaagaaa
aaaagtacttAAAAGTAAATGAAGATTAACAATTTGCAAAGATAATGTGT
TTTTAATAATGTAATTACAAAGATAGTTTTAATGCTGCACAAATCTTTAG
CTTCCTTGATTTTTACTGTTGTAgtttaaatatgatttttaggTCGGACA
AGGAGCAATTTGGGTTGGACAATGTCCGGTGTCTGACCGTTATTTCAAGC
CCTGGAAAGAGTTAAATNN
Run BLAST on NCBI

transcript from alignment at scaffold_65:327645..328013

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071970 ID=TCONS_00071970|Name=TCONS_00071970|organism=Clytia hemisphaerica|type=transcript|length=369bp|location=Sequence derived from alignment at scaffold_65:327645..328013 (Clytia hemisphaerica)
NNATTTAACTCTTTCCAGGGCTTGAAATAACGGTCAGACACCGGACATTG
TCCAACCCAAATTGCTCCTTGTCCGAcctaaaaatcatatttaaacTACA
ACAGTAAAAATCAAGGAAGCTAAAGATTTGTGCAGCATTAAAACTATCTT
TGTAATTACATTATTAAAAACACATTATCTTTGCAAATTGTTAATCTTCA
TTTACTTTTaagtactttttttcttttttttgcaaattcagCTTTATTCT
GCATTAAAGCAATCCAgcctttcaaattcttttttttgctggCAAAATAA
TGCAGTTGAATAAAAGTAATTTAGCAACAAAAAGTGTAATTTGTGTTGGT
ATTTACTACAAAATTCATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044686XLOC_044686Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071970-exon-scaffold_65-1491911889:327645..328013TCONS_00071970-exon-scaffold_65-1491911889:327645..328013Clytia hemisphaericaexon
TCONS_00071970-exon-scaffold_65-1510915933:327645..328013TCONS_00071970-exon-scaffold_65-1510915933:327645..328013Clytia hemisphaericaexon
TCONS_00071970-exon-scaffold_65-1575043694:327645..328013TCONS_00071970-exon-scaffold_65-1575043694:327645..328013Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_65supercontigscaffold_65:327645..328013 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.55215	0.432455	1.00424	0.245624	3.8873	1.41775	2.85076	1.33443	9.90319	6.01762	3.81902	5.61164	3.09686	2.14408	1.51091	2.02679	3.49558	2.55918	1.88568	1.97323	1.28632	0.313711	2.28814	1.38684	0	0.63741	0.608088	0	0.492219	0.501493
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071970 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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