TCONS_00071968 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071968
Unique NameTCONS_00071968
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length381

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071968 ID=TCONS_00071968|Name=TCONS_00071968|organism=Clytia hemisphaerica|type=transcript|length=381bp
ATTTTCACACACATTTTCTCACTTTTGCATTCTTGGCTGTTCACCAGCTC
ACACATGTGGCCAATTTGGTAAGTTTTCTTTTGCCACTCCTTGTTTTGGG
CTTGCTTTGCATGGTCAcatgtttctttttgttttgccTTATCAGCTCTC
AGTCTTAGTGTTGAGGCACAACACTTGGACTTGGACTAACAGAGGTTAGG
TTTAGCCTATTATATTTAtcatattcttaatattttataGCTTGATATAG
CTACAATGTCACATTAATTCTCATATCTTCGAAGATATCTTGTATCCTCT
ACTCGAATACTAGCCATAGGACTTACGTTTTGTCCATATTTACATATCAT
TTGCAAACTAGTtacttttgtattttgtttc
Run BLAST on NCBI

transcript from alignment at scaffold_65:288890..289270

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071968 ID=TCONS_00071968|Name=TCONS_00071968|organism=Clytia hemisphaerica|type=transcript|length=381bp|location=Sequence derived from alignment at scaffold_65:288890..289270 (Clytia hemisphaerica)
gaaacaaaatacaaaagtaACTAGTTTGCAAATGATATGTAAATATGGAC
AAAACGTAAGTCCTATGGCTAGTATTCGAGTAGAGGATACAAGATATCTT
CGAAGATATGAGAATTAATGTGACATTGTAGCTATATCAAGCtataaaat
attaagaatatgaTAAATATAATAGGCTAAACCTAACCTCTGTTAGTCCA
AGTCCAAGTGTTGTGCCTCAACACTAAGACTGAGAGCTGATAAggcaaaa
caaaaagaaacatgTGACCATGCAAAGCAAGCCCAAAACAAGGAGTGGCA
AAAGAAAACTTACCAAATTGGCCACATGTGTGAGCTGGTGAACAGCCAAG
AATGCAAAAGTGAGAAAATGTGTGTGAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044684XLOC_044684Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071968-exon-scaffold_65-1491911889:288890..289270TCONS_00071968-exon-scaffold_65-1491911889:288890..289270Clytia hemisphaericaexon
TCONS_00071968-exon-scaffold_65-1510915933:288890..289270TCONS_00071968-exon-scaffold_65-1510915933:288890..289270Clytia hemisphaericaexon
TCONS_00071968-exon-scaffold_65-1575043694:288890..289270TCONS_00071968-exon-scaffold_65-1575043694:288890..289270Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_65supercontigscaffold_65:288890..289270 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.68146	2.4137	0.700635	1.14244	0.278161	0.219807	0.795562	0.49653	0.173816	0	0	0.68686	0.411543	0	0	0	0.309686	0.317418	0.219265	0.229445	0.19943	0.291824	0.709501	0.47693	0.442917	0.197647	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071968 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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