TCONS_00071966 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071966
Unique NameTCONS_00071966
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length600

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071966 ID=TCONS_00071966|Name=TCONS_00071966|organism=Clytia hemisphaerica|type=transcript|length=600bp
TTCGGTAGCTTCAAGAAGAAGTTGAGGAAAACTTATGTTTCATCCCTGTA
CGAAATTGCCGATGTCTGTGATGGCACCAAGTGTAACTTTGCCGTTCTTG
TCGGAAATCACAACAAGGACGTGACCGTAAAGACGTACGATTGGTCGCAT
CACTTTGATAAAACCCTGAATTTTAAGAAGTTCAAGGACATGCTAAAGTA
CCATCATTTTCGCATGTCAAAAGATGAACCGGGGATTGTATCATGCTATG
AGACTCTGGATTCAGAACCAGTAAAAATCTCGGTTTTTAGAAAGCGTAAA
CCACCAGTTGTAACAGCAGAGCTACCAAATATGGTGGAACCAAAGGGGTT
TACCCAAGCACGCGcagaatatctttggaaagaaatatgtcaattttgta
aacatggcACTGAAGGTTTGGTTGCTCCTTGAACTTGGATTGAGATGATT
ATActgctttttatattttctttttagtgttgaAACAGTTTCATGCTGTA
TATAGTTCCTTTCCATAGCATAGCATTGCATTGTCCATTTTCCAAACTGG
ACTCCACCATCAGTTCATTCTTTGTTATTAActctgaaaatgaagaaaag
Run BLAST on NCBI

protein sequence of TCONS_00071966-protein

>TCONS_00071966-protein ID=TCONS_00071966-protein|Name=TCONS_00071966-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
FGSFKKKLRKTYVSSLYEIADVCDGTKCNFAVLVGNHNKDVTVKTYDWSH
HFDKTLNFKKFKDMLKYHHFRMSKDEPGIVSCYETLDSEPVKISVFRKRK
PPVVTAELPNMVEPKGFTQARAEYLWKEICQFCKHGTEGLVAP
Run BLAST on NCBI

transcript from alignment at scaffold_65:257096..257695

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071966 ID=TCONS_00071966|Name=TCONS_00071966|organism=Clytia hemisphaerica|type=transcript|length=600bp|location=Sequence derived from alignment at scaffold_65:257096..257695 (Clytia hemisphaerica)
cttttcttcattttcagagTTAATAACAAAGAATGAACTGATGGTGGAGT
CCAGTTTGGAAAATGGACAATGCAATGCTATGCTATGGAAAGGAACTATA
TACAGCATGAAACTGTTtcaacactaaaaagaaaatataaaaagcagTAT
AATCATCTCAATCCAAGTTCAAGGAGCAACCAAACCTTCAGTgccatgtt
tacaaaattgacatatttctttccaaagatattctgCGCGTGCTTGGGTA
AACCCCTTTGGTTCCACCATATTTGGTAGCTCTGCTGTTACAACTGGTGG
TTTACGCTTTCTAAAAACCGAGATTTTTACTGGTTCTGAATCCAGAGTCT
CATAGCATGATACAATCCCCGGTTCATCTTTTGACATGCGAAAATGATGG
TACTTTAGCATGTCCTTGAACTTCTTAAAATTCAGGGTTTTATCAAAGTG
ATGCGACCAATCGTACGTCTTTACGGTCACGTCCTTGTTGTGATTTCCGA
CAAGAACGGCAAAGTTACACTTGGTGCCATCACAGACATCGGCAATTTCG
TACAGGGATGAAACATAAGTTTTCCTCAACTTCTTCTTGAAGCTACCGAA

Coding sequence (CDS) from alignment at scaffold_65:257096..257695

>TCONS_00071966 ID=TCONS_00071966|Name=TCONS_00071966|organism=Clytia hemisphaerica|type=CDS|length=432bp|location=Sequence derived from alignment at scaffold_65:257096..257695 (Clytia hemisphaerica)
TCAAGGAGCAACCAAACCTTCAGTgccatgtttacaaaattgacatattt
ctttccaaagatattctgCGCGTGCTTGGGTAAACCCCTTTGGTTCCACC
ATATTTGGTAGCTCTGCTGTTACAACTGGTGGTTTACGCTTTCTAAAAAC
CGAGATTTTTACTGGTTCTGAATCCAGAGTCTCATAGCATGATACAATCC
CCGGTTCATCTTTTGACATGCGAAAATGATGGTACTTTAGCATGTCCTTG
AACTTCTTAAAATTCAGGGTTTTATCAAAGTGATGCGACCAATCGTACGT
CTTTACGGTCACGTCCTTGTTGTGATTTCCGACAAGAACGGCAAAGTTAC
ACTTGGTGCCATCACAGACATCGGCAATTTCGTACAGGGATGAAACATAA
GTTTTCCTCAACTTCTTCTTGAAGCTACCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044682XLOC_044682Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071966-exon-scaffold_65-1491911889:257096..257695TCONS_00071966-exon-scaffold_65-1491911889:257096..257695Clytia hemisphaericaexon
TCONS_00071966-exon-scaffold_65-1510915933:257096..257695TCONS_00071966-exon-scaffold_65-1510915933:257096..257695Clytia hemisphaericaexon
TCONS_00071966-exon-scaffold_65-1575043694:257096..257695TCONS_00071966-exon-scaffold_65-1575043694:257096..257695Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071966-proteinTCONS_00071966-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_65supercontigscaffold_65:257096..257695 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.802461	0.724655	0.503262	0.579862	0.473848	0.778371	0.847288	1.1533	0.67037	0.495317	0	0	0	0	0	0	0	0	0	0	1.25048	0.28453	0	0	0	0.102607
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071966 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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