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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071964 ID=TCONS_00071964|Name=TCONS_00071964|organism=Clytia hemisphaerica|type=transcript|length=1671bp
CGTCTGACGTAGCTTAGTATACTTATAAGCTTCTCAAGTGAGCCGAAACG
TTCGTACTCAATGATGGCGTGTAAGTCGGTAGCAGGTATTTTCGTCATTG
TCAAAGTCGTTGTCACGTTATTGTCAGTTTCCGTTAAGTCGATACTCTCT
TTCATTATGTCATCGTAAAGTTCAGAAGAAGAGAGATTCGTAATGATGTC
ATCAAAAGAATCGGAAGTAGAAAGATTCGATTGTTAGTCAGAAGAGGTTA
AGAAAGAAGGACTCTTAAACCAACGATCTTGAAGCAATCCGTCAAAACCA
CTCAGTTTCCTCGTAGGAATATCCGCTGGGTTCTCATCACCTGCTACATG
CGACCAACCTCCTCGATCAACGACTTGCCGAATCTTCACCACTCGATTTT
CAACCCAGCCTTTCCAAGCTTTCTCCTTTCCCTTTATCCAACTCCGAGCT
ACTTCTGAATCCGTCCAACAATGTATTCGCTGTAGATCGACACTTTTCAA
GAATGCACGTTCAATATCTCTCACCAATCTAGATAAAAGAAGACAACTCA
AAAGCTCAAGAAGTGGAATCGTAACAACTTTGATCGGAGCAACCTTCGTT
ACGATGCTAACAAAGACGTCTTCACATCAGTCCCCATCAGCACTCTCAAA
TACACAACTGCGCAATAAACTTCCGACGAACTATCACAAAACCCATGTAA
CTCACATCCTCTAATCAAATCTGCTGGAACCAAAACAAACCTCTCCACCG
TTACTTTACCCACACTTGCAACAACATCGACAAACCGAAACCAAGCCTCC
CTTATTTCCTCCGAAACCTCGCAATCCGATTCCGAACTATCTTTGCAGAG
TAGTTGGAAAATGGTTTTCATCCACGCCGTGATTGGTGAAATCAACCCTA
AAGGATCGTAAAGAGAAGCTGAAACACTCAAAATATTCCTTTTCGTCAAT
ACAGTACTTCGACATTTCACAACGAACTCGCTTAAGCACACTACTAACGA
GTCTGTTTCCTTATCCCAGTCCATCCCCAAAACTTTGTTGGAAGAAACGG
TCTTTTGACCAAGCTGAGATTTGCAAAATGATTCGTCGACTCCGTCACAC
TTCGGTTCAATTACCTGTTCATCAAAAAACTTCTGCAGCTCCCTGTCATT
CGACTTCCACTTCCTCACATCCAATCCCGCCTTAGCCAAAACCTTAACCG
CCTTTCGATAAAAAACTGagagaaaactgggaagtacattagtgcaggat
ccgttgattgaTTTCACACTTTCGATAAAACTCTTTTCCTTCTGCCACGT
TTTCACAACCACTAGCCTCATCATCCACGTACAAAGCgttcagaaatttt
ttcacaaagaaaACGTCTTTTTCTTTCTCCACATGCTGCTTGATCGTTGC
ATTCAACAAAAATGGCGAACTAGTAAGCCCAAAAACAACTCTTCGAAACC
GAAAAATCTCAACTTCATTATCCGAAGAATACCACAAGAACCGCAGAAAA
NTGCTACAAGAACCGCAGAAAATCTCTATGCTCAGGATGAATACCAACAT
TCAGAAAAGCCTGTTTGATATCCGCTGTAATCGCAATTCTATTTAACCTG
AATCTCAACAGAATATCGAAGATCTTTGCAAGCATGTTAGGACCAGGATA
CAAACACTCATTCAGGGAGGG Run BLAST on NCBI protein sequence of TCONS_00071964-protein >TCONS_00071964-protein ID=TCONS_00071964-protein|Name=TCONS_00071964-protein|organism=Clytia hemisphaerica|type=polypeptide|length=241bp
MMRLVVVKTWQKEKSFIESVKSINGSCTNVLPSFLSVFYRKAVKVLAKAG
LDVRKWKSNDRELQKFFDEQVIEPKCDGVDESFCKSQLGQKTVSSNKVLG
MDWDKETDSLVVCLSEFVVKCRSTVLTKRNILSVSASLYDPLGLISPITA
WMKTIFQLLCKDSSESDCEVSEEIREAWFRFVDVVASVGKVTVERFVLVP
ADLIRGCELHGFCDSSSEVYCAVVYLRVLMGTDVKTSLLAS Run BLAST on NCBI transcript from alignment at scaffold_65:240087..241757 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071964 ID=TCONS_00071964|Name=TCONS_00071964|organism=Clytia hemisphaerica|type=transcript|length=1671bp|location=Sequence derived from alignment at scaffold_65:240087..241757 (Clytia hemisphaerica)
CCCTCCCTGAATGAGTGTTTGTATCCTGGTCCTAACATGCTTGCAAAGAT
CTTCGATATTCTGTTGAGATTCAGGTTAAATAGAATTGCGATTACAGCGG
ATATCAAACAGGCTTTTCTGAATGTTGGTATTCATCCTGAGCATAGAGAT
TTTCTGCGGTTCTTGTAGCANTTTTCTGCGGTTCTTGTGGTATTCTTCGG
ATAATGAAGTTGAGATTTTTCGGTTTCGAAGAGTTGTTTTTGGGCTTACT
AGTTCGCCATTTTTGTTGAATGCAACGATCAAGCAGCATGTGGAGAAAGA
AAAAGACGTtttctttgtgaaaaaatttctgaacGCTTTGTACGTGGATG
ATGAGGCTAGTGGTTGTGAAAACGTGGCAGAAGGAAAAGAGTTTTATCGA
AAGTGTGAAAtcaatcaacggatcctgcactaatgtacttcccagttttc
tctCAGTTTTTTATCGAAAGGCGGTTAAGGTTTTGGCTAAGGCGGGATTG
GATGTGAGGAAGTGGAAGTCGAATGACAGGGAGCTGCAGAAGTTTTTTGA
TGAACAGGTAATTGAACCGAAGTGTGACGGAGTCGACGAATCATTTTGCA
AATCTCAGCTTGGTCAAAAGACCGTTTCTTCCAACAAAGTTTTGGGGATG
GACTGGGATAAGGAAACAGACTCGTTAGTAGTGTGCTTAAGCGAGTTCGT
TGTGAAATGTCGAAGTACTGTATTGACGAAAAGGAATATTTTGAGTGTTT
CAGCTTCTCTTTACGATCCTTTAGGGTTGATTTCACCAATCACGGCGTGG
ATGAAAACCATTTTCCAACTACTCTGCAAAGATAGTTCGGAATCGGATTG
CGAGGTTTCGGAGGAAATAAGGGAGGCTTGGTTTCGGTTTGTCGATGTTG
TTGCAAGTGTGGGTAAAGTAACGGTGGAGAGGTTTGTTTTGGTTCCAGCA
GATTTGATTAGAGGATGTGAGTTACATGGGTTTTGTGATAGTTCGTCGGA
AGTTTATTGCGCAGTTGTGTATTTGAGAGTGCTGATGGGGACTGATGTGA
AGACGTCTTTGTTAGCATCGTAACGAAGGTTGCTCCGATCAAAGTTGTTA
CGATTCCACTTCTTGAGCTTTTGAGTTGTCTTCTTTTATCTAGATTGGTG
AGAGATATTGAACGTGCATTCTTGAAAAGTGTCGATCTACAGCGAATACA
TTGTTGGACGGATTCAGAAGTAGCTCGGAGTTGGATAAAGGGAAAGGAGA
AAGCTTGGAAAGGCTGGGTTGAAAATCGAGTGGTGAAGATTCGGCAAGTC
GTTGATCGAGGAGGTTGGTCGCATGTAGCAGGTGATGAGAACCCAGCGGA
TATTCCTACGAGGAAACTGAGTGGTTTTGACGGATTGCTTCAAGATCGTT
GGTTTAAGAGTCCTTCTTTCTTAACCTCTTCTGACTAACAATCGAATCTT
TCTACTTCCGATTCTTTTGATGACATCATTACGAATCTCTCTTCTTCTGA
ACTTTACGATGACATAATGAAAGAGAGTATCGACTTAACGGAAACTGACA
ATAACGTGACAACGACTTTGACAATGACGAAAATACCTGCTACCGACTTA
CACGCCATCATTGAGTACGAACGTTTCGGCTCACTTGAGAAGCTTATAAG
TATACTAAGCTACGTCAGACG Coding sequence (CDS) from alignment at scaffold_65:240087..241757 >TCONS_00071964 ID=TCONS_00071964|Name=TCONS_00071964|organism=Clytia hemisphaerica|type=CDS|length=726bp|location=Sequence derived from alignment at scaffold_65:240087..241757 (Clytia hemisphaerica)
ATGATGAGGCTAGTGGTTGTGAAAACGTGGCAGAAGGAAAAGAGTTTTAT
CGAAAGTGTGAAAtcaatcaacggatcctgcactaatgtacttcccagtt
ttctctCAGTTTTTTATCGAAAGGCGGTTAAGGTTTTGGCTAAGGCGGGA
TTGGATGTGAGGAAGTGGAAGTCGAATGACAGGGAGCTGCAGAAGTTTTT
TGATGAACAGGTAATTGAACCGAAGTGTGACGGAGTCGACGAATCATTTT
GCAAATCTCAGCTTGGTCAAAAGACCGTTTCTTCCAACAAAGTTTTGGGG
ATGGACTGGGATAAGGAAACAGACTCGTTAGTAGTGTGCTTAAGCGAGTT
CGTTGTGAAATGTCGAAGTACTGTATTGACGAAAAGGAATATTTTGAGTG
TTTCAGCTTCTCTTTACGATCCTTTAGGGTTGATTTCACCAATCACGGCG
TGGATGAAAACCATTTTCCAACTACTCTGCAAAGATAGTTCGGAATCGGA
TTGCGAGGTTTCGGAGGAAATAAGGGAGGCTTGGTTTCGGTTTGTCGATG
TTGTTGCAAGTGTGGGTAAAGTAACGGTGGAGAGGTTTGTTTTGGTTCCA
GCAGATTTGATTAGAGGATGTGAGTTACATGGGTTTTGTGATAGTTCGTC
GGAAGTTTATTGCGCAGTTGTGTATTTGAGAGTGCTGATGGGGACTGATG
TGAAGACGTCTTTGTTAGCATCGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071964-exon-scaffold_65-1491911889:240087..241757 | TCONS_00071964-exon-scaffold_65-1491911889:240087..241757 | Clytia hemisphaerica | exon |
| TCONS_00071964-exon-scaffold_65-1510915933:240087..241757 | TCONS_00071964-exon-scaffold_65-1510915933:240087..241757 | Clytia hemisphaerica | exon |
| TCONS_00071964-exon-scaffold_65-1575043694:240087..241757 | TCONS_00071964-exon-scaffold_65-1575043694:240087..241757 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_65 | supercontig | scaffold_65:240087..241757 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008042 | Retrotrans_Pao |
Blast
The following BLAST results are available for this feature:
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