TCONS_00071963 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071963
Unique NameTCONS_00071963
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length464

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071963 ID=TCONS_00071963|Name=TCONS_00071963|organism=Clytia hemisphaerica|type=transcript|length=464bp
acttccaaacttcaaccgacaacttccaaacttcaaccgacaacttccaa
acttcaaccgacaacttccaaacttcaaccGACAACTTCCAAACCTCAAC
TGACAACCTCCAAACTTCAACCGacaacttccaaacttcaacTGGCAACT
TCCAAATCTCAACCAAGTACCTACAAAATTCAACCATTAATTCTCATATC
TCAAATGCCAACAACATCAGATTCTTGTTTGTCAATCTCAAAAAGCAATT
CCACTTACTGGAAACATCTCATCCAATCGAAATACTCAAAACACCTCAAC
CTATCGAAATACTTGAAACATCTCAACAAATCAACTTGCTCAAAGCACCT
CATTTAATCGACTTGATCGAATCACCTCAATCAATCGAATCGTTTGAATT
GTCTCACTCGTTCGAATCGTCTCACTCAATCGAATCGTTCGAATCGTCTC
ACTCAATCGAATCG
Run BLAST on NCBI

protein sequence of TCONS_00071963-protein

>TCONS_00071963-protein ID=TCONS_00071963-protein|Name=TCONS_00071963-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
FQTSTDNFQTSTDNFQTSTDNFQTSTDNFQTSTDNLQTSTDNFQTSTGNF
QISTKYLQNSTINSHISNANNIRFLFVNLKKQFHLLETSHPIEILKTPQP
IEILETSQQINLLKAPHLIDLIESPQSIESFELSHSFESSHSIESFESSH
SIES
Run BLAST on NCBI

transcript from alignment at scaffold_65:182180..182643

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071963 ID=TCONS_00071963|Name=TCONS_00071963|organism=Clytia hemisphaerica|type=transcript|length=464bp|location=Sequence derived from alignment at scaffold_65:182180..182643 (Clytia hemisphaerica)
CGATTCGATTGAGTGAGACGATTCGAACGATTCGATTGAGTGAGACGATT
CGAACGAGTGAGACAATTCAAACGATTCGATTGATTGAGGTGATTCGATC
AAGTCGATTAAATGAGGTGCTTTGAGCAAGTTGATTTGTTGAGATGTTTC
AAGTATTTCGATAGGTTGAGGTGTTTTGAGTATTTCGATTGGATGAGATG
TTTCCAGTAAGTGGAATTGCTTTTTGAGATTGACAAACAAGAATCTGATG
TTGTTGGCATTTGAGATATGAGAATTAATGGTTGAATTTTGTAGGTACTT
GGTTGAGATTTGGAAGTTGCCAgttgaagtttggaagttgtCGGTTGAAG
TTTGGAGGTTGTCAGTTGAGGTTTGGAAGTTGTCggttgaagtttggaag
ttgtcggttgaagtttggaagttgtcggttgaagtttggaagttgtcggt
tgaagtttggaagt

Coding sequence (CDS) from alignment at scaffold_65:182180..182643

>TCONS_00071963 ID=TCONS_00071963|Name=TCONS_00071963|organism=Clytia hemisphaerica|type=CDS|length=462bp|location=Sequence derived from alignment at scaffold_65:182180..182643 (Clytia hemisphaerica)
CGATTCGATTGAGTGAGACGATTCGAACGATTCGATTGAGTGAGACGATT
CGAACGAGTGAGACAATTCAAACGATTCGATTGATTGAGGTGATTCGATC
AAGTCGATTAAATGAGGTGCTTTGAGCAAGTTGATTTGTTGAGATGTTTC
AAGTATTTCGATAGGTTGAGGTGTTTTGAGTATTTCGATTGGATGAGATG
TTTCCAGTAAGTGGAATTGCTTTTTGAGATTGACAAACAAGAATCTGATG
TTGTTGGCATTTGAGATATGAGAATTAATGGTTGAATTTTGTAGGTACTT
GGTTGAGATTTGGAAGTTGCCAgttgaagtttggaagttgtCGGTTGAAG
TTTGGAGGTTGTCAGTTGAGGTTTGGAAGTTGTCggttgaagtttggaag
ttgtcggttgaagtttggaagttgtcggttgaagtttggaagttgtcggt
tgaagtttggaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044679XLOC_044679Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071963-exon-scaffold_65-1491911889:182180..182643TCONS_00071963-exon-scaffold_65-1491911889:182180..182643Clytia hemisphaericaexon
TCONS_00071963-exon-scaffold_65-1510915933:182180..182643TCONS_00071963-exon-scaffold_65-1510915933:182180..182643Clytia hemisphaericaexon
TCONS_00071963-exon-scaffold_65-1575043694:182180..182643TCONS_00071963-exon-scaffold_65-1575043694:182180..182643Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071963-proteinTCONS_00071963-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_65supercontigscaffold_65:182180..182643 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.496907	1.86464	1.09033	1.89484	8.49091	7.19376	8.67503	8.03731	1.26409	0.318034	0	0.166565	0.721564	0.158806	0.319286	0.417269	0.116973	0	0.246504	0.552475	0.418244	0.544952	0	0.420754	1.21039	0.321513	0.652168	0.397837	0.272549	0.895566
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071963 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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