|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071962 ID=TCONS_00071962|Name=TCONS_00071962|organism=Clytia hemisphaerica|type=transcript|length=1982bp
CCTATCTCGTAATTTTTTCATCCCTTTTTGAGCAGATTCTTGactttctt
ttttgtcaaaCTCAGTTTGcttacctcgtaattttttcatccctttttgg
ttagattttctgtttttttccttttcaaacgCAGTTTGGTTGTCCCGTAA
AATATTCATTCCTTTCTGGGCAGATTTTCTTGTCGAATTAAGTTGATCTT
CATTAAGGTTGCAtcgtatttttttcatttgctctCTTTTTGAGCCAGCA
GTTAGTTTGCGTTTTCGCTTGATAGGAGTTGGTTTAAGAGATATTGTTTC
TGCGTCATTCATCTTATTGTTTTGACGATCAAGTTCTTGAAGAAGAGAGC
GTTTCAATAGTTTTTCAGGTGTGAGGGTTGGTAAAAATTCTTCTGTCTCA
AAAATACTATCCAAATCGGGTTGAGCGATGTTTATTTGGCTTTCATCACA
TTTTTCCTTTCTCGATGTTTTACTTATTTCAAAATCTATTATTGATTTAT
GAGCTGTAAGAGAAGGGGTAGCTTTTCCTATTTCAACATAGTTTTCTTCC
GTATCATGCATTGTGAGTATTGGCGTATTACCTCTTGAAAATGAGCAACT
ATTATCGTCACTTTGATTACAAGCAGGACTCGTGGAGACTGTTTGTTTAG
TAACGTCTTTTTTGTAAATTAATATGTACGGTACTGTTTTCTCATTAACT
GAGCATCTAAAGGAATTAGTTTGAAAAGGTGCAACATGTTCATCGTCAGC
TGAGTACCATGTTTCCCCATGTTTTACGACAGCAGTGTAATGGCCACTAT
TGGGCGAATTTCCGTGATGATATACAATTCCTTGCAAATGGAGTGTTCCT
AGAAGTACATTCTCAACCTTTGTTTCGATAGTTAAATTTGGTGCTAATTT
CTTAGAAGAATTTGTTGTTCTATCAAaaccaaaaataattaattGAATAA
TCAAAGTATCAGCCACATTAAAGAGAATTGTAGATTTGGTCGCATTTGTT
CGGACTGGACATATGGGACAAGGATATGCTTCTTGCAGCAATTCTCCGTG
TGGATCATTGACTAATTTCGAAATTTCGTTTTCAATAGAGTTTTCACGGA
AACGATCAGGGAATTCAATACGACAATATGAATCATAAACAGTTTTTTCA
GATGGGTTATAGCAAGTTTGACATAATACTGACTGTAAACATGATATTTG
GAATACATTACTTGGTTCTGAAACATTGGGATCAAGTGAATAAAGCATAC
TCAAAATGTAATATAAACATTCGTGTGCATCATATTGTTCTTTCAGGGCG
TGATTATAATTTAAAAGGGGCATTAAATGCACATACTGGTACGTTTCAAT
AGGAGTGACTGAAGTTTCCattaatgtaaacaattgtTTCATAGCCACTT
TGCCAGGACAGTTAGTTTCAAGTTGACTTATAAATTCATGAAAGTTATCA
TTAGAATATAGTACTTGAAGAAcggaattaaaaaaacaaacattttgtcC
CAAATTCTTTAACCTTAAGGGTGAGCTTCCTCCCTTTTTGATCGAGGTCA
AAACCTTTTCAAAATTCTGATCAACCTTAACGACTTTACTTGGGGTTCCT
TTGAAGCCTTTATTCTTTTTTGGTGTATCTTTAGGCCTTCCTCTGTTCGT
ATGAGAGTTATCACCCATCATTGTCAAAAAGCGTGaatcaaattgaaaaa
ttggttgGATTTGGAATGTATTATAAGATGTTTTATTATGAAGTATCGTT
ATCTCAGTTTTCGTTTTCTCAAGTATCGTAATATCAATGCGTAATGAATC
GTAATGAATCGTAATGAATGCCAACACCACCGCTACAACTAGGTGACTCG
TTGGCGCCAACACCACCGCTTTAAATAGGTGACTCGTTGGCAACTGATTT
ATTAACCTCTCCACCGCTTTATAGGTGACACCAGGTATAAATCagtaaaa
aaaactatttacaaATGATAAGTATAATgttg Run BLAST on NCBI protein sequence of TCONS_00071962-protein >TCONS_00071962-protein ID=TCONS_00071962-protein|Name=TCONS_00071962-protein|organism=Clytia hemisphaerica|type=polypeptide|length=557bp
MMGDNSHTNRGRPKDTPKKNKGFKGTPSKVVKVDQNFEKVLTSIKKGGSS
PLRLKNLGQNVCFFNSVLQVLYSNDNFHEFISQLETNCPGKVAMKQLFTL
METSVTPIETYQYVHLMPLLNYNHALKEQYDAHECLYYILSMLYSLDPNV
SEPSNVFQISCLQSVLCQTCYNPSEKTVYDSYCRIEFPDRFRENSIENEI
SKLVNDPHGELLQEAYPCPICPVRTNATKSTILFNVADTLIIQLIIFGFD
RTTNSSKKLAPNLTIETKVENVLLGTLHLQGIVYHHGNSPNSGHYTAVVK
HGETWYSADDEHVAPFQTNSFRCSVNEKTVPYILIYKKDVTKQTVSTSPA
CNQSDDNSCSFSRGNTPILTMHDTEENYVEIGKATPSLTAHKSIIDFEIS
KTSRKEKCDESQINIAQPDLDSIFETEEFLPTLTPEKLLKRSLLQELDRQ
NNKMNDAETISLKPTPIKRKRKLTAGSKREQMKKIRCNLNEDQLNSTRKS
AQKGMNILRDNQTAFEKEKNRKSNQKGMKKLRGKQTEFDKKESQESAQKG
MKKLRDR Run BLAST on NCBI transcript from alignment at scaffold_65:135763..137744 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071962 ID=TCONS_00071962|Name=TCONS_00071962|organism=Clytia hemisphaerica|type=transcript|length=1982bp|location=Sequence derived from alignment at scaffold_65:135763..137744 (Clytia hemisphaerica)
caacATTATACTTATCATttgtaaatagttttttttactGATTTATACCT
GGTGTCACCTATAAAGCGGTGGAGAGGTTAATAAATCAGTTGCCAACGAG
TCACCTATTTAAAGCGGTGGTGTTGGCGCCAACGAGTCACCTAGTTGTAG
CGGTGGTGTTGGCATTCATTACGATTCATTACGATTCATTACGCATTGAT
ATTACGATACTTGAGAAAACGAAAACTGAGATAACGATACTTCATAATAA
AACATCTTATAATACATTCCAAATCcaaccaatttttcaatttgattCAC
GCTTTTTGACAATGATGGGTGATAACTCTCATACGAACAGAGGAAGGCCT
AAAGATACACCAAAAAAGAATAAAGGCTTCAAAGGAACCCCAAGTAAAGT
CGTTAAGGTTGATCAGAATTTTGAAAAGGTTTTGACCTCGATCAAAAAGG
GAGGAAGCTCACCCTTAAGGTTAAAGAATTTGGgacaaaatgtttgtttt
tttaattccgTTCTTCAAGTACTATATTCTAATGATAACTTTCATGAATT
TATAAGTCAACTTGAAACTAACTGTCCTGGCAAAGTGGCTATGAAacaat
tgtttacattaatGGAAACTTCAGTCACTCCTATTGAAACGTACCAGTAT
GTGCATTTAATGCCCCTTTTAAATTATAATCACGCCCTGAAAGAACAATA
TGATGCACACGAATGTTTATATTACATTTTGAGTATGCTTTATTCACTTG
ATCCCAATGTTTCAGAACCAAGTAATGTATTCCAAATATCATGTTTACAG
TCAGTATTATGTCAAACTTGCTATAACCCATCTGAAAAAACTGTTTATGA
TTCATATTGTCGTATTGAATTCCCTGATCGTTTCCGTGAAAACTCTATTG
AAAACGAAATTTCGAAATTAGTCAATGATCCACACGGAGAATTGCTGCAA
GAAGCATATCCTTGTCCCATATGTCCAGTCCGAACAAATGCGACCAAATC
TACAATTCTCTTTAATGTGGCTGATACTTTGATTATTCaattaattattt
ttggttTTGATAGAACAACAAATTCTTCTAAGAAATTAGCACCAAATTTA
ACTATCGAAACAAAGGTTGAGAATGTACTTCTAGGAACACTCCATTTGCA
AGGAATTGTATATCATCACGGAAATTCGCCCAATAGTGGCCATTACACTG
CTGTCGTAAAACATGGGGAAACATGGTACTCAGCTGACGATGAACATGTT
GCACCTTTTCAAACTAATTCCTTTAGATGCTCAGTTAATGAGAAAACAGT
ACCGTACATATTAATTTACAAAAAAGACGTTACTAAACAAACAGTCTCCA
CGAGTCCTGCTTGTAATCAAAGTGACGATAATAGTTGCTCATTTTCAAGA
GGTAATACGCCAATACTCACAATGCATGATACGGAAGAAAACTATGTTGA
AATAGGAAAAGCTACCCCTTCTCTTACAGCTCATAAATCAATAATAGATT
TTGAAATAAGTAAAACATCGAGAAAGGAAAAATGTGATGAAAGCCAAATA
AACATCGCTCAACCCGATTTGGATAGTATTTTTGAGACAGAAGAATTTTT
ACCAACCCTCACACCTGAAAAACTATTGAAACGCTCTCTTCTTCAAGAAC
TTGATCGTCAAAACAATAAGATGAATGACGCAGAAACAATATCTCTTAAA
CCAACTCCTATCAAGCGAAAACGCAAACTAACTGCTGGCTCAAAAAGaga
gcaaatgaaaaaaatacgaTGCAACCTTAATGAAGATCAACTTAATTCGA
CAAGAAAATCTGCCCAGAAAGGAATGAATATTTTACGGGACAACCAAACT
Gcgtttgaaaaggaaaaaaacagaaaatctaaccaaaaagggatgaaaaa
attacgaggtaagCAAACTGAGtttgacaaaaaagaaagtCAAGAATCTG
CTCAAAAAGGGATGAAAAAATTACGAGATAGG Coding sequence (CDS) from alignment at scaffold_65:135763..137744 >TCONS_00071962 ID=TCONS_00071962|Name=TCONS_00071962|organism=Clytia hemisphaerica|type=CDS|length=1671bp|location=Sequence derived from alignment at scaffold_65:135763..137744 (Clytia hemisphaerica)
ATGATGGGTGATAACTCTCATACGAACAGAGGAAGGCCTAAAGATACACC
AAAAAAGAATAAAGGCTTCAAAGGAACCCCAAGTAAAGTCGTTAAGGTTG
ATCAGAATTTTGAAAAGGTTTTGACCTCGATCAAAAAGGGAGGAAGCTCA
CCCTTAAGGTTAAAGAATTTGGgacaaaatgtttgtttttttaattccgT
TCTTCAAGTACTATATTCTAATGATAACTTTCATGAATTTATAAGTCAAC
TTGAAACTAACTGTCCTGGCAAAGTGGCTATGAAacaattgtttacatta
atGGAAACTTCAGTCACTCCTATTGAAACGTACCAGTATGTGCATTTAAT
GCCCCTTTTAAATTATAATCACGCCCTGAAAGAACAATATGATGCACACG
AATGTTTATATTACATTTTGAGTATGCTTTATTCACTTGATCCCAATGTT
TCAGAACCAAGTAATGTATTCCAAATATCATGTTTACAGTCAGTATTATG
TCAAACTTGCTATAACCCATCTGAAAAAACTGTTTATGATTCATATTGTC
GTATTGAATTCCCTGATCGTTTCCGTGAAAACTCTATTGAAAACGAAATT
TCGAAATTAGTCAATGATCCACACGGAGAATTGCTGCAAGAAGCATATCC
TTGTCCCATATGTCCAGTCCGAACAAATGCGACCAAATCTACAATTCTCT
TTAATGTGGCTGATACTTTGATTATTCaattaattatttttggttTTGAT
AGAACAACAAATTCTTCTAAGAAATTAGCACCAAATTTAACTATCGAAAC
AAAGGTTGAGAATGTACTTCTAGGAACACTCCATTTGCAAGGAATTGTAT
ATCATCACGGAAATTCGCCCAATAGTGGCCATTACACTGCTGTCGTAAAA
CATGGGGAAACATGGTACTCAGCTGACGATGAACATGTTGCACCTTTTCA
AACTAATTCCTTTAGATGCTCAGTTAATGAGAAAACAGTACCGTACATAT
TAATTTACAAAAAAGACGTTACTAAACAAACAGTCTCCACGAGTCCTGCT
TGTAATCAAAGTGACGATAATAGTTGCTCATTTTCAAGAGGTAATACGCC
AATACTCACAATGCATGATACGGAAGAAAACTATGTTGAAATAGGAAAAG
CTACCCCTTCTCTTACAGCTCATAAATCAATAATAGATTTTGAAATAAGT
AAAACATCGAGAAAGGAAAAATGTGATGAAAGCCAAATAAACATCGCTCA
ACCCGATTTGGATAGTATTTTTGAGACAGAAGAATTTTTACCAACCCTCA
CACCTGAAAAACTATTGAAACGCTCTCTTCTTCAAGAACTTGATCGTCAA
AACAATAAGATGAATGACGCAGAAACAATATCTCTTAAACCAACTCCTAT
CAAGCGAAAACGCAAACTAACTGCTGGCTCAAAAAGagagcaaatgaaaa
aaatacgaTGCAACCTTAATGAAGATCAACTTAATTCGACAAGAAAATCT
GCCCAGAAAGGAATGAATATTTTACGGGACAACCAAACTGcgtttgaaaa
ggaaaaaaacagaaaatctaaccaaaaagggatgaaaaaattacgaggta
agCAAACTGAGtttgacaaaaaagaaagtCAAGAATCTGCTCAAAAAGGG
ATGAAAAAATTACGAGATAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071962-exon-scaffold_65-1491911889:135763..137744 | TCONS_00071962-exon-scaffold_65-1491911889:135763..137744 | Clytia hemisphaerica | exon |
| TCONS_00071962-exon-scaffold_65-1510915933:135763..137744 | TCONS_00071962-exon-scaffold_65-1510915933:135763..137744 | Clytia hemisphaerica | exon |
| TCONS_00071962-exon-scaffold_65-1575043694:135763..137744 | TCONS_00071962-exon-scaffold_65-1575043694:135763..137744 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_65 | supercontig | scaffold_65:135763..137744 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0016579 | protein deubiquitination |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0036459 | thiol-dependent ubiquitinyl hydrolase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0016579 |
protein deubiquitination |
| molecular_function |
GO:0036459 |
thiol-dependent ubiquitinyl hydrolase activity |
Blast
The following BLAST results are available for this feature:
|
